ASFVdb The African Swine Fever Virus Database
Strain
Ukraine_Kyiv_2014 (Region: Ukraine;  Strain: ASFV/Kyiv/2016/131;  Date: 2014)
Gene
F778R
Description
Annotated in NCBI,  ASFV_Kyiv_2016_131_00066
GenBank Accession
 

Sequence

CDS
ATGCCCCTAATCTCAAGTACGGCCTATGGGTCCCCGACCTATTCATGGAAATACTTGAAGACCAAATACACAACAGAGGCGACGGCAAATGGTACCTCTTTTCGCCGGATCAGGCCCCCCAATCTACATAAGGTCTTTGATTTGGAACGGTCGCAGCACGAAAACGCACACCGCGAATTTAAAAAGCTTTACTATCAGTATGTTGCTGAAAAAAGGTACACCGGCGTCACAACGGCCAAAGAGATTATCAAAGAGTGGTTCAAAACAGTTGTTCAAGTAGGGAATCCCTATATCGGGTTTAAAGATGCCATAAATCGTAAAAGTAATCTTTCACATGTAGGCACTATCACGAACTCCAATCTTTGTATTGAAGTCACAATCCCCTGCTGGGAGGGTGATAAGGCTGAACAAGGTGTTTGTAATCTGGCCGCAGTAAATCTAGCCGCCTTTATACGTGAAAATGGCTACGACTACCGTGGGCTCATAGAAGCATCAGGCAATGTCACAGAAAATTTAGATAATATTATAGATAATGGCTACTACCCCACAGAAGCCACGCGGAGAAGCAATATGCGTCACCGACCTATTGGCATCGGGGTCTTTGGCCTAGCCGACGTGTTTGCGTCTTTAAAAATGAAATTTGGTTCACCTGAGGCCATTGCCATGGATGAGGCCATCCATGCGGCCCTATACTACGGGGCCATGCGACGATCCATAGAACTTGCAAAAGAAAAAGGAAGTCATCCCAGCTTTCCGGGGTCTGCGGCCTCAAAGGGTCTACTGCAGCCCGACCTATGGGTTCGCTGTGGTGATTTAGTTTCCTCCTGGGAAGAACGCGTGGCACAGACGACGCAGGGTGTGTTGACGCCGAAAAGGTGGTCGCAGCTACGCCTGGCGGCTATGCAGGGACTTCGAAATGGATATGTCACAGCTCTTATGCCCACCGCAACCTCCTCAAATTCTACAGGAAAAAACGAATGTTTTGAGCCCTTTACATCCAATCTATATACACGTAGAACGTTAAGCGGGGAGTTTATTGTTTTAAATAAGTATTTAATAGACGATTTAAAAGAAATTAATCTTTGGACAGAAGCCATTCAACAGCAGCTACTAAATGCGGGAGGTAGCATTCAGCACATTTTGGATATACCGGCCGAGATCCGCGATCGGTATAAAACCTCCAGGGAAATGAATCAAAAAATTTTAACAAAACACGCGGCCGCACGAAACCCCTTTGTATCCCAAAGTATGTCCTTGAACTATTACTTTTATGAACCTGAACTAAGCCAGGTACTTACAGTGCTCGTCCTAGGCTGGAAAAAAGGTTTAACTACCGGTTCCTATTACTGTCATTTTAGCCCTGGAGCGGGTACCCAAAAAAAGATTATAAGAAACTCTGAGAAAGCGTGTAATGCGGACTGCGAGGCGTGTCTTCTGTAG
Protein
MPLISSTAYGSPTYSWKYLKTKYTTEATANGTSFRRIRPPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVVQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCGDLVSSWEERVAQTTQGVLTPKRWSQLRLAAMQGLRNGYVTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQLLNAGGSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNADCEACLL

Summary

Pfam
PF02867   Ribonuc_red_lgC
Interpro
IPR013346   NrdE_NrdA
IPR039718   Rrm1
IPR000788   RNR_lg_C
ProteinModelPortal
PDB
3S8B     E-value=4.81754e-140,     Score=1279

Ontologies

Subcellular Location

From MSLVP
Nucleus

Topology

Length:
479
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0612600000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00288
outside
1  -  479
 
 

Population Genetic Test Statistics

Pi
0.0533494
Theta
0.0557504
Tajima's D
-0.8634077
CLR
0.109586
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
Protein
AJL34224.1
AKO62727.1
China_AnhuiXCGQ_2018 Protein
Protein
AJL34224.1
AYW34017.1
China_ASFV-SY18_2018 Protein
AKO62727.1
Poland_Pol16_20186_o7_2016-2017 Protein
Protein
AJL34224.1
AXZ95821.1
Poland_Pol16_20538_o9_2016-2017 Protein
AJL34224.1
Poland_Pol16_20540_o10_2016-2017 Protein
AJL34224.1
Poland_Pol16_29413_o23_2016-2017 Protein
AJL34224.1
Poland_Pol17_03029_C201_2016-2017 Protein
Protein
AJL34224.1
AXZ96009.1
Poland_Pol17_04461_C210_2016-2017 Protein
Protein
AJL34224.1
AXZ96104.1
Poland_Pol17_05838_C220_2016-2017 Protein
AJL34224.1
Poland_ASFV_POL_Podlaskie_2015 Protein
AJL34224.1
Uganda_R8_2015 Protein
AXB49274.1
Uganda_R7_2015 Protein
AXB49448.1
Uganda_R25_2015 Protein
AXB49620.1
Uganda_N10_2015 Protein
AXB49791.1
Uganda_R35_2015 Protein
AXB49964.1
Estonia_2014 Protein
Protein
AJL34224.1
SPS73468.1
Italy_26544_OG10_2010 Protein
Protein
AJL34224.1
AJZ77051.1
Italy_47_Ss_2008_2008 Protein
Protein
AJL34224.1
AOO54375.1
Portugal_OURT_88.3_1988 Protein
Protein
AJL34224.1
CAN10393.1
Spain_E75_1975 Protein
Protein
AJL34224.1
CBH29146.1
Russia_Georgia_2007 Protein
Protein
AJL34224.1
CBW46711.1
Kenya_Tk1_2005 Protein
AJL34059.1
Kenya_Bus_2006 Protein
Protein
AJL34224.1
AJL34224.1
Russia_Odintsovo_2014 Protein
AJL34224.1
Portugal_L60_1960 Protein
Protein
AJL34224.1
AIY22236.1
Portugal_NHV_1968 Protein
Protein
AJL34224.1
AIY22395.1
Russia_Kashino_2013 Protein
AJL34224.1
Benin_1997 Protein
Protein
AJL34224.1
CAN10144.1
South_Africa_KNP_Pretorisuskop_1996 Protein
AJL34224.1
South_Africa_MGR_Mkuzi_1979 Protein
AJL34224.1
Malawi_Lil_1983 Protein
AJL34224.1
Kenya_1950 Protein
AJL34224.1
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987 Protein
AJL34224.1
Malawi_Tengani_1962 Protein
AJL34224.1
China_HLJ_2018 Protein
Protein
AJL34224.1
QBH90533.1
China_LN_2018 Protein
Protein
AJL34224.1
QBH90718.1
China_wbBS01_2018 Protein
Protein
AJL34224.1
QDL88076.1
Ukraine_Kyiv_2014 Protein
Protein
QED21601.1
QED21602.1
Belgium_Etalle_wb_2018 Protein
Protein
AJL34224.1
QED90488.1
Lithuania_LT14_2014 Protein
Protein
AJL34224.1
QEY87851.1
South_Africa_1985 Protein
QGM12901.1
South_Africa_2_2008 Protein
QGM12827.1
Zambia_LIV_1983 Protein
QGM12707.1
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