Strain

Ukraine_Kyiv_2014 (Region: Ukraine; Strain: ASFV/Kyiv/2016/131; Date: 2014)

Gene

F778R

Description

Annotated in NCBI, ASFV_Kyiv_2016_131_00066

Location

MN194591.1(+):59571-61010

GenBank Accession

QED21602.1

CDS

ATGCCCCTAATCTCAAGTACGGCCTATGGGTCCCCGACCTATTCATGGAAATACTTGAAGACCAAATACACAACAGAGGCGACGGCAAATGGTACCTCTTTTCGCCGGATCAGGCCCCCCAATCTACATAAGGTCTTTGATTTGGAACGGTCGCAGCACGAAAACGCACACCGCGAATTTAAAAAGCTTTACTATCAGTATGTTGCTGAAAAAAGGTACACCGGCGTCACAACGGCCAAAGAGATTATCAAAGAGTGGTTCAAAACAGTTGTTCAAGTAGGGAATCCCTATATCGGGTTTAAAGATGCCATAAATCGTAAAAGTAATCTTTCACATGTAGGCACTATCACGAACTCCAATCTTTGTATTGAAGTCACAATCCCCTGCTGGGAGGGTGATAAGGCTGAACAAGGTGTTTGTAATCTGGCCGCAGTAAATCTAGCCGCCTTTATACGTGAAAATGGCTACGACTACCGTGGGCTCATAGAAGCATCAGGCAATGTCACAGAAAATTTAGATAATATTATAGATAATGGCTACTACCCCACAGAAGCCACGCGGAGAAGCAATATGCGTCACCGACCTATTGGCATCGGGGTCTTTGGCCTAGCCGACGTGTTTGCGTCTTTAAAAATGAAATTTGGTTCACCTGAGGCCATTGCCATGGATGAGGCCATCCATGCGGCCCTATACTACGGGGCCATGCGACGATCCATAGAACTTGCAAAAGAAAAAGGAAGTCATCCCAGCTTTCCGGGGTCTGCGGCCTCAAAGGGTCTACTGCAGCCCGACCTATGGGTTCGCTGTGGTGATTTAGTTTCCTCCTGGGAAGAACGCGTGGCACAGACGACGCAGGGTGTGTTGACGCCGAAAAGGTGGTCGCAGCTACGCCTGGCGGCTATGCAGGGACTTCGAAATGGATATGTCACAGCTCTTATGCCCACCGCAACCTCCTCAAATTCTACAGGAAAAAACGAATGTTTTGAGCCCTTTACATCCAATCTATATACACGTAGAACGTTAAGCGGGGAGTTTATTGTTTTAAATAAGTATTTAATAGACGATTTAAAAGAAATTAATCTTTGGACAGAAGCCATTCAACAGCAGCTACTAAATGCGGGAGGTAGCATTCAGCACATTTTGGATATACCGGCCGAGATCCGCGATCGGTATAAAACCTCCAGGGAAATGAATCAAAAAATTTTAACAAAACACGCGGCCGCACGAAACCCCTTTGTATCCCAAAGTATGTCCTTGAACTATTACTTTTATGAACCTGAACTAAGCCAGGTACTTACAGTGCTCGTCCTAGGCTGGAAAAAAGGTTTAACTACCGGTTCCTATTACTGTCATTTTAGCCCTGGAGCGGGTACCCAAAAAAAGATTATAAGAAACTCTGAGAAAGCGTGTAATGCGGACTGCGAGGCGTGTCTTCTGTAG

Protein

MPLISSTAYGSPTYSWKYLKTKYTTEATANGTSFRRIRPPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVVQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQPDLWVRCGDLVSSWEERVAQTTQGVLTPKRWSQLRLAAMQGLRNGYVTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQLLNAGGSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNADCEACLL

Uniprot

A0A5B8XAQ8

EMBL

MN194591 QED21602.1

Proteomes

UP000321214

Pfam

PF02867 Ribonuc_red_lgC

Interpro

IPR013346   NrdE_NrdA
IPR039718   Rrm1
IPR000788   RNR_lg_C

ProteinModelPortal

A0A5B8XAQ8

PANTHER

PTHR11573

PDB

3S8B E-value=4.81754e-140, Score=1279

Ontologies

Subcellular Location

From MSLVP

Nucleus

Topology

Length:

479

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0612600000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00288

outside

1 - 479

Population Genetic Test Statistics

Pi

0.0533494

Theta

0.0557504

Tajima's D

-0.8634077

CLR

0.109586

Interpretation

No evidence of Selection

Multiple alignment of Orthologues

Gene Tree

Orthologous in Strains

Strain	Status	Gene
Spain_BA71_1971	Protein Protein	AJL34224.1 AKO62727.1
China_AnhuiXCGQ_2018	Protein Protein	AJL34224.1 AYW34017.1
China_ASFV-SY18_2018	Protein	AKO62727.1
Poland_Pol16_20186_o7_2016-2017	Protein Protein	AJL34224.1 AXZ95821.1
Poland_Pol16_20538_o9_2016-2017	Protein	AJL34224.1
Poland_Pol16_20540_o10_2016-2017	Protein	AJL34224.1
Poland_Pol16_29413_o23_2016-2017	Protein	AJL34224.1
Poland_Pol17_03029_C201_2016-2017	Protein Protein	AJL34224.1 AXZ96009.1
Poland_Pol17_04461_C210_2016-2017	Protein Protein	AJL34224.1 AXZ96104.1
Poland_Pol17_05838_C220_2016-2017	Protein	AJL34224.1
Poland_ASFV_POL_Podlaskie_2015	Protein	AJL34224.1
Uganda_R8_2015	Protein	AXB49274.1
Uganda_R7_2015	Protein	AXB49448.1
Uganda_R25_2015	Protein	AXB49620.1
Uganda_N10_2015	Protein	AXB49791.1
Uganda_R35_2015	Protein	AXB49964.1
Estonia_2014	Protein Protein	AJL34224.1 SPS73468.1
Italy_26544_OG10_2010	Protein Protein	AJL34224.1 AJZ77051.1
Italy_47_Ss_2008_2008	Protein Protein	AJL34224.1 AOO54375.1
Portugal_OURT_88.3_1988	Protein Protein	AJL34224.1 CAN10393.1
Spain_E75_1975	Protein Protein	AJL34224.1 CBH29146.1
Russia_Georgia_2007	Protein Protein	AJL34224.1 CBW46711.1
Kenya_Tk1_2005	Protein	AJL34059.1
Kenya_Bus_2006	Protein Protein	AJL34224.1 AJL34224.1
Russia_Odintsovo_2014	Protein	AJL34224.1
Portugal_L60_1960	Protein Protein	AJL34224.1 AIY22236.1
Portugal_NHV_1968	Protein Protein	AJL34224.1 AIY22395.1
Russia_Kashino_2013	Protein	AJL34224.1
Benin_1997	Protein Protein	AJL34224.1 CAN10144.1
South_Africa_KNP_Pretorisuskop_1996	Protein	AJL34224.1
South_Africa_MGR_Mkuzi_1979	Protein	AJL34224.1
Malawi_Lil_1983	Protein	AJL34224.1
Kenya_1950	Protein	AJL34224.1
Namibia_Warthog_1980
South_Africa_Warmbaths_1987	Protein	AJL34224.1
Malawi_Tengani_1962	Protein	AJL34224.1
China_HLJ_2018	Protein Protein	AJL34224.1 QBH90533.1
China_LN_2018	Protein Protein	AJL34224.1 QBH90718.1
China_wbBS01_2018	Protein Protein	AJL34224.1 QDL88076.1
Ukraine_Kyiv_2014	Protein Protein	QED21601.1 QED21602.1
Belgium_Etalle_wb_2018	Protein Protein	AJL34224.1 QED90488.1
Lithuania_LT14_2014	Protein Protein	AJL34224.1 QEY87851.1
South_Africa_1985	Protein	QGM12901.1
South_Africa_2_2008	Protein	QGM12827.1
Zambia_LIV_1983	Protein	QGM12707.1

Sequence