ASFVdb The African Swine Fever Virus Database
Strain
South_Africa_2_2008 (Region: South Africa;  Strain: RSA_2_2008;  Date: 2008)
Gene
pF165R
Description
Annotated in NCBI,  F165R
Location
MN336500.1(+):58499-62239
GenBank Accession
QGM12828.1
Full name
Uncharacterized protein F165R      
 

Sequence

CDS
ATGGCAAACCCCAACAAGAGGATATTGTATACAAAAAGTATACAGGCATCCATTACTTCCATATTATATTTTTTTTTCTTCTATATATTGGAATATTTTGTTGCGGTACACAATGCAACCTCCTTGGGGGTTTTTACTTCTATGGAGCAATGTGCAGAAACGATGCAACAATACCCTGCCCTCCATTATGTGGTTTTTATGTATACTTGTCCGGCGGATGCAGAAAATACAGATGTTGTATATTTATTACCCTCGTTATCCTTGCACACCCCCATGTTTGTACACCACTGTCCAAATCGTACTATACAAGCACGACACGTATTGCAAAAAATATACTTACTGTTCGAGGAAGAGTCTATTGCAAATTGGAAGGTTTCAGTATATACTGTGTTCCCCCATGTTCACAACAGATTATCTGCGCCGAAACTTTCCATCGACGAGGCTATTGCAGCCGTACAAAAGTTTTTGCTACAAGCAGGACGACTCATGTCTCTGTATGTGTCTTCCTTTATCGGAGAAGTCTCTTCCTTTACCGAGGAAGTCTCTGTTATGGGCAAGAGGTTTGCAACAACGCAGGGGCTCTGCTTATTCTGCTGTCTTACAAAGGGAATCAAACTACCTGCTTTCGTATTTTTATTGTACTATTTACCCTTGTTGTGGTGTATTTTACGACCATACCGTACTCCCAGCACTTTATTACTGTATTTTACAATTGTTTGTGGGTCCGTTTTGTTACGCTTTTTATGCTTATACTCAAAGCTGTCCGCGCTTATATCATACTGTACAAATTCATCAACGAGTTTCGCCATCAATTGTTCATTGGTCAATATATTACGGTCCTGTACGCATTTATACCCGCACTTTGTTATCAGCATATTGGCGTACATATGGGATTGCAAGCTATATTTATATTGCAGATCATGTTGCTCTGCATGTTGCATGGCCCATTGTTGGAAGTTTATTTCCTGTGTTTGTATGTTACTACGCGATTCGTATACTGTTTTTCCACGGCTTATTTGGACACGGCCGGTGTACTTCTGTTTTGTCATACAACTATTGTATTGTTCAACAAATTTGGGAGTATTTTTATGTCCGTGCCATGCATACAATTCGAGTACTTTATACTTTTCATACGCAAATACGTCTTGCTGGTCTACTGTGTTGCCTTCCTTTATGTTTTGTTTATTTACTACAGCTTTATTGTCATCAATGGTTTCAGCCGAGGCAATGTTTACATACTCCTGGTGCTTATTTTCCATTTTATTGCTTGTATACTGTTTGTCTGTCTCCAGCTTTTCACCCGTCAGTATATACACTTTACCGCCGGTGTCGGCGATCTGGTTATTATATCGTGTTATACAGTGGTTTTTTGTTACATGTTGTATCCGCATTGTTTCGAGCCATACATGGTACTATGGAGTTTTATATTATATCGGCCTACCTGTTTCCTTATTATACGTGCAGGAAAGCTGGTGTTTGCTTATGGTCTGCAAGAGGGTGTCACGTTTTTGTATCGTGTACATTTCAATGTCTTCAATGGTTTCTGGAAAGTATTTTTGTTTTCCTTGTACGCAGATTTTATATCATTTACTTTTTATTTCACGCACGCGGCCCAACATTTGGCAACATGTTTCTACATCACACGACATATTGTTACAAAAGCCGTATACAACATCAAATCTCTTATCTTCGTATGCAACACCCGCTGCAATCGTGGGCGTATACATATGGATATCAACGAGCCCCCAATATTATGTCACATTATTACAATGGGATTCCCGTTCATGTGCAGTGCTTTTACAACTATACAACCCGATCTTTTTTTCCGGAAACTTTTTTTGGATATATGTTTGCAACAGCCGGGCCTCCATTATTGTATTTGTACGGATATCAATTTTTTTGTCTTCTACCAAATCCTTTACAAGGTTATTTATCCAAGTTTCTCGTGCAGAGGTGCAATATTACATGTCATGCTGGGCCCTTTTATATTGCTTCCAGTGCAAGAAGATACGGACATCCCCGCGAAAACGCTGTACAATATTATACGTTCGATTTCCTACGTTTGCGTCCAAGCATATATCATATTTTGCCGTCTCGAGCATCCACATACAAATGGCAAAAGAGGGAGCAAAGTATTTGTGCAGGCCGCTATTGTATTGTTTACAAATCGATTCTACCTCATCCAAAATATGTACGTCCACAGGCTCGGCTGTGGAGGTTACCCGGAAAAGTGTTTCTACCTGTATGTTGTCTCTTTCGTACCTGTCCAAATCTCCAGTTACTTCGCTGTACAATGTGCAATTCGGTACCCGGGACTGTATATTTTTTGCGAAGATCTGTCGAAATGTCACGAACCGTATGGTTTGTTGTTTTGCAATACAATTATTACCGTACTATTTTTGTATATACTTACGCAGTTGTATGGTTTTACCTATTTTCATTTGTGCCTTTACAACAAGCGTACGGACTCGTTCATACTCCCGCATACTACTTTCATCATACATGTGTTTTTGTGGATCAGGCAGTTCTTCAAAGAGAATGGACTCATGTACCTCTATGCTCTTTGTCATCACTTGGTCCACGTATGTTTCCACAAAATTATTTGTACCGGAAAGGCTGCCCATGTGCAGGCTATGTTTATTGTCATGGCGACAATGTTGTTACACTTTGTTTCCCGTGTCTCTTACAATTACGGTATTGTCCTTATCATGCATACGCTTACAAATTTCGCAGTATCTTGGACTTGTACGTTTATACAATACTATATTTTTATGTACACGGAGGAAGCAATGTTTTTTACATACTGTTCCTGCGAATTTTATTACCTCTTCAAGTTCACTTTGTTGGATACTATCGCAGGAACTCGGTGCTGTTTCTTTTACATTTGTGCAGATACAAGGTATACACGTCGTTTCAAAGGGGGTTGCTATATGGGTATCACTCTTTTTCGTGGTTGTACTGGTCTCAAACACATCTGCAAGCTCCTCATTATACATTTTATCACGCATGCTACCTTTTTTATGCGACCCTATGTTGCGAAAATTTTGCATACTTTTGTTGTCCTGGGGGTCAACAAAGGGATATACGTGTTTGGGAAGATTTTCTATCACTTTGGATGTACAGGCTTTGGCCTCATTGTTGTTTATTACTGTGTGCGTATACAGTATGTTATGCAAGGAGTATTTATGTTCTCGCTTTTTATTTATCCCGATACAATCTGTTACCAAAATTTGTTCACGCGTTACGTTGTTGTTATATGGTACAGAATACGTCTCGTACAATACATCCATGTTGTCGTTATTTATCATGTCAAGGATGTCATACACATTGTCATCGTTATTGTCATTGTCATTGTCATTGTCGTCGTCATTGTCATCAGAATATGTCTTATTTACCGGGAAGTCGATGTCAAATTTTATGCGCTGTGGCAAAAACCCAAACACTACTTCGTGGAAACACTTCTGCTCAAAGGGCTGTGCCGCCTCCCACTCCCAAAAGTCATCTCGGCTTGCAAAAACTCTACAAAGATTATTATATTCATCTCGCACCACGAAGTGTTTCTTTATGGTTTCGAGAGAATATTTATCCTCTACGGCTTCTCCTTGGGAGTTACAGCGAAGAAACTTGTATGTTTCTTGCATTTTGATAATTAAAATTAAATCAATTATGATGCGGCCGCTGACGCAGCCGCCTCACGCGGCCGTCATACATAAAGCGGCATGGCCGTTTTATAACGACTAG
Protein
MANPNKRILYTKSIQASITSILYFFFFYILEYFVAVHNATSLGVFTSMEQCAETMQQYPALHYVVFMYTCPADAENTDVVYLLPSLSLHTPMFVHHCPNRTIQARHVLQKIYLLFEEESIANWKVSVYTVFPHVHNRLSAPKLSIDEAIAAVQKFLLQAGRLMSLYVSSFIGEVSSFTEEVSVMGKRFATTQGLCLFCCLTKGIKLPAFVFLLYYLPLLWCILRPYRTPSTLLLYFTIVCGSVLLRFLCLYSKLSALISYCTNSSTSFAINCSLVNILRSCTHLYPHFVISILAYIWDCKLYLYCRSCCSACCMAHCWKFISCVCMLLRDSYTVFPRLIWTRPVYFCFVIQLLYCSTNLGVFLCPCHAYNSSTLYFSYANTSCWSTVLPSFMFCLFTTALLSSMVSAEAMFTYSWCLFSILLLVYCLSVSSFSPVSIYTLPPVSAIWLLYRVIQWFFVTCCIRIVSSHTWYYGVLYYIGLPVSLLYVQESWCLLMVCKRVSRFCIVYISMSSMVSGKYFCFPCTQILYHLLFISRTRPNIWQHVSTSHDILLQKPYTTSNLLSSYATPAAIVGVYIWISTSPQYYVTLLQWDSRSCAVLLQLYNPIFFSGNFFWIYVCNSRASIIVFVRISIFLSSTKSFTRLFIQVSRAEVQYYMSCWALLYCFQCKKIRTSPRKRCTILYVRFPTFASKHISYFAVSSIHIQMAKEGAKYLCRPLLYCLQIDSTSSKICTSTGSAVEVTRKSVSTCMLSLSYLSKSPVTSLYNVQFGTRDCIFFAKICRNVTNRMVCCFAIQLLPYYFCIYLRSCMVLPIFICAFTTSVRTRSYSRILLSSYMCFCGSGSSSKRMDSCTSMLFVITWSTYVSTKLFVPERLPMCRLCLLSWRQCCYTLFPVSLTITVLSLSCIRLQISQYLGLVRLYNTIFLCTRRKQCFLHTVPANFITSSSSLCWILSQELGAVSFTFVQIQGIHVVSKGVAIWVSLFFVVVLVSNTSASSSLYILSRMLPFLCDPMLRKFCILLLSWGSTKGYTCLGRFSITLDVQALASLLFITVCVYSMLCKEYLCSRFLFIPIQSVTKICSRVTLLLYGTEYVSYNTSMLSLFIMSRMSYTLSSLLSLSLSLSSSLSSEYVLFTGKSMSNFMRCGKNPNTTSWKHFCSKGCAASHSQKSSRLAKTLQRLLYSSRTTKCFFMVSREYLSSTASPWELQRRNLYVSCILIIKIKSIMMRPLTQPPHAAVIHKAAWPFYND

Summary

Similarity
Belongs to the asfivirus F165R family.
Keywords
Complete proteome   Host membrane   Membrane   Transmembrane   Transmembrane helix   Reference proteome  
Feature
chain  Uncharacterized protein F165R
Uniprot
P0CA69   P0CA68   A9JKY9   D4I5N4   A9JLQ0   A0A0A1E3H5   + More
Q65145   P0CA66   A0A0C5AZX8   P0CA67   A0A3S9JJR6   E0WMI4   A0A2X0RVC5   A0A0C5AZD7  
Pubmed
18198370    25406173    26618713    11831707    25645905    30547827    + More
21470447   
EMBL
AY261366    AY261363    AM712239    CAN10145.1    FN557520    CBH29147.1    + More
AM712240    CAN10394.1    KM262844    KM262845    KM102979    KP055815    KX354450    AIY22237.1    AIY22396.1    AJZ77149.1    AKO62728.1    AOO54377.1    U18466    AY261360    KM111295    MH025916    MH025917    MH025918    MH025919    MH025920    AJL34225.1    AXB49275.1    AXB49449.1    AXB49621.1    AXB49792.1    AXB49965.1    AY261361    MH910495    AZP54066.1    FR682468    CBW46712.1    MG939583    MG939587    MG939588    LS478113    AXZ95822.1    AXZ96010.1    AXZ96105.1    SPS73469.1    KM111294    AJL34060.1   
Proteomes
UP000000858    UP000000859    UP000130745    UP000101090    UP000108903    UP000110401    + More
UP000117635    UP000142390    UP000241813    UP000266411    UP000000624    UP000000861    UP000101566    UP000000860    UP000141072    UP000105860   
ProteinModelPortal
P0CA69   P0CA68   A9JKY9   D4I5N4   A9JLQ0   A0A0A1E3H5   + More
Q65145   P0CA66   A0A0C5AZX8   P0CA67   A0A3S9JJR6   E0WMI4   A0A2X0RVC5   A0A0C5AZD7  
PDB
6G2I     E-value=7.30353,     Score=72

Ontologies

KEGG
vg:22220428    
GO
GO:0033644  C:host cell membrane
 GO:0016021  C:integral component of membrane

Subcellular Location

From MSLVP
Capsid
From Uniprot
Host membrane  

Topology

Length:
1246
Number of predicted TMHs:
16
Exp number of AAs in TMHs:
403.175770000001
Exp number, first 60 AAs:
22.05078
Total prob of N-in:
0.54978
POSSIBLE N-term signal
sequence
outside
1  -  14
TMhelix
15  -  37
inside
38  -  193
TMhelix
194  -  216
outside
217  -  230
TMhelix
231  -  250
inside
251  -  346
TMhelix
347  -  369
outside
370  -  383
TMhelix
384  -  406
inside
407  -  412
TMhelix
413  -  435
outside
436  -  444
TMhelix
445  -  467
inside
468  -  473
TMhelix
474  -  496
outside
497  -  510
TMhelix
511  -  533
inside
534  -  560
TMhelix
561  -  578
outside
579  -  611
TMhelix
612  -  634
inside
635  -  794
TMhelix
795  -  817
outside
818  -  887
TMhelix
888  -  910
inside
911  -  930
TMhelix
931  -  953
outside
954  -  967
TMhelix
968  -  990
inside
991  -  1034
TMhelix
1035  -  1057
outside
1058  -  1246
 
 

Population Genetic Test Statistics

Pi
0.0389718
Theta
0.0489569
Tajima's D
-0.6985251
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
 AKO62728.1
China_AnhuiXCGQ_2018 Protein
 AYW34018.1
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017 Protein
 AXZ95822.1
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017 Protein
 AXZ96010.1
Poland_Pol17_04461_C210_2016-2017 Protein
 AXZ96105.1
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015 Protein
 AXB49275.1
Uganda_R7_2015 Protein
 AXB49449.1
Uganda_R25_2015 Protein
 AXB49621.1
Uganda_N10_2015 Protein
 AXB49792.1
Uganda_R35_2015 Protein
 AXB49965.1
Estonia_2014 Protein
 SPS73469.1
Italy_26544_OG10_2010 Protein
 AJZ77149.1
Italy_47_Ss_2008_2008 Protein
 AOO54377.1
Portugal_OURT_88.3_1988 Protein
 CAN10394.1
Spain_E75_1975 Protein
 CBH29147.1
Russia_Georgia_2007 Protein
 CBW46712.1
Kenya_Tk1_2005 Protein
 AJL34060.1
Kenya_Bus_2006 Protein
 AJL34225.1
Russia_Odintsovo_2014    
Portugal_L60_1960 Protein
 AIY22237.1
Portugal_NHV_1968 Protein
 AIY22396.1
Russia_Kashino_2013    
Benin_1997 Protein
 CAN10145.1
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018 Protein
 QBH90534.1
China_LN_2018 Protein
 QBH90719.1
China_wbBS01_2018 Protein
 QDL88077.1
Ukraine_Kyiv_2014 Protein
 QED21603.1
Belgium_Etalle_wb_2018 Protein
 QED90489.1
Lithuania_LT14_2014 Protein
 QEY87852.1
South_Africa_1985 Protein
Protein
 QGM12902.1
QGM12902.1
South_Africa_2_2008 Protein
 QGM12828.1
Zambia_LIV_1983 Protein
Protein
 QGM12708.1
QGM12709.1
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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