ASFVdb The African Swine Fever Virus Database
Strain
Uganda_R7_2015 (Region: Uganda, Tororo district;  Strain: R7;  Date: 2015)
Gene
pF165R
Description
Annotated in NCBI,  pF165R
GenBank Accession
Full name
Uncharacterized protein F165R      
 

Sequence

CDS
ATGGCAAACCCCAGCAAGAGGATAATGAATAAAAAAAGTAAACAGGCATCCATTAGTTCCATATTAAATTTTTTTTTCTTCTATATAATGGAATATTTTGTTGCGGTAGACAATGAAACCCCCTTGGGGGTTTTTACTTCCATGGAGCAATGCGAGGAAACGATGAAACAATACCCCGGCCTCCATTACGTCGTTTTTAAGTATACGTGTCCGGCGGACGCAGAAAATACAGATGTTGTATATTTAATACCCTCGTTAACCTTGCACACCCCCATGTTTGTAGACCACTGCCCGAACCGTACTAAACAAGCACGACATGTATTGAAAAAAATAAACTTAGTGTTCGAAGAAGAATCTATTGAAACTTGGAAGGTTTCAGTAAATACTGTGTTCCCTCACGTTCACAATAGATTATCTGCGCCGAAACTTTCCATCGACGAGGCCAATGAAGCCGTAGAAAAGTTTTTGATACAGGCAGGGCGACTCATGTCTCTATAA
Protein
MANPSKRIMNKKSKQASISSILNFFFFYIMEYFVAVDNETPLGVFTSMEQCEETMKQYPGLHYVVFKYTCPADAENTDVVYLIPSLTLHTPMFVDHCPNRTKQARHVLKKINLVFEEESIETWKVSVNTVFPHVHNRLSAPKLSIDEANEAVEKFLIQAGRLMSL

Summary

Similarity
Belongs to the asfivirus F165R family.
Keywords
Complete proteome   Host membrane   Membrane   Transmembrane   Transmembrane helix   Reference proteome  
Feature
chain  Uncharacterized protein F165R
PDB
6G2I     E-value=7.30353,     Score=72

Ontologies

KEGG

Subcellular Location

From MSLVP
Capsid
From Uniprot
Host membrane  

Topology

Length:
165
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
18.00839
Exp number, first 60 AAs:
17.84002
Total prob of N-in:
0.92968
POSSIBLE N-term signal
sequence
inside
1  -  16
TMhelix
17  -  36
outside
37  -  165
 
 

Population Genetic Test Statistics

Pi
0.0305643
Theta
0.0364103
Tajima's D
-0.5343091
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62728.1
China_AnhuiXCGQ_2018 Protein
AYW34018.1
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95822.1
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017 Protein
AXZ96010.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96105.1
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015 Protein
AXB49275.1
Uganda_R7_2015 Protein
AXB49449.1
Uganda_R25_2015 Protein
AXB49621.1
Uganda_N10_2015 Protein
AXB49792.1
Uganda_R35_2015 Protein
AXB49965.1
Estonia_2014 Protein
SPS73469.1
Italy_26544_OG10_2010 Protein
AJZ77149.1
Italy_47_Ss_2008_2008 Protein
AOO54377.1
Portugal_OURT_88.3_1988 Protein
CAN10394.1
Spain_E75_1975 Protein
CBH29147.1
Russia_Georgia_2007 Protein
CBW46712.1
Kenya_Tk1_2005 Protein
AJL34060.1
Kenya_Bus_2006 Protein
AJL34225.1
Russia_Odintsovo_2014    
Portugal_L60_1960 Protein
AIY22237.1
Portugal_NHV_1968 Protein
AIY22396.1
Russia_Kashino_2013    
Benin_1997 Protein
CAN10145.1
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018 Protein
QBH90534.1
China_LN_2018 Protein
QBH90719.1
China_wbBS01_2018 Protein
QDL88077.1
Ukraine_Kyiv_2014 Protein
QED21603.1
Belgium_Etalle_wb_2018 Protein
QED90489.1
Lithuania_LT14_2014 Protein
QEY87852.1
South_Africa_1985 Protein
Protein
QGM12902.1
QGM12902.1
South_Africa_2_2008 Protein
QGM12828.1
Zambia_LIV_1983 Protein
Protein
QGM12708.1
QGM12709.1
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号

In processing...
Login to ASFVdb
Email
Password
Please go to Regist if without an account.
If you have forgotten your password, you can once again Regist an account with a registed or new email.
Change my password
Enter new password
Reenter new password
Regist an account of ASFVdb
It is required that you provide your institutional e-mail address (with edu or org in the domain) as confirmation of your affiliation.
Enter email
Reenter email
First Name
Last Name
Institution
You can directly go to if with an account.
Registraion Success
Your password has been sent to your email.
Please check it and login later.
Welcome to use ASFVdb.