ASFVdb The African Swine Fever Virus Database
Strain
Poland_Pol16_20186_o7_2016-2017 (Region: Poland;  Strain: Pol16_20186_o7;  Date: 2016-2017)
Gene
F165R
Description
Annotated in NCBI,  pF165R
GenBank Accession
Full name
Uncharacterized protein F165R      
 

Sequence

CDS
ATGGTAAACCCCAACAAGAGGATAATGAATAAAAAAAGTAAACAGGCATCCATTAGTTCCATATTAAATTTTTTTTTCTTCTATATAATGGAATATTTTGTTGCGGTAGACAATGAAACCTCCTTGGGGGTTTTTACTTCTATAGAGCAATGTGAAGAAACGATGAAACAATACCCCGGCCTCCATTATGTCGTTTTTAAGTATATGTGTCCGGCGGATGCAGAAAATACAGATGTTGTATATTTAATACCCTCGTTAACCTTGCATACCCCCATGTTTGTAGACCACTGTCCAAATCGTACCAAACAAGCACGACACGTATTGAAAAAAATAAACTTAGTGTTCGAGGAAGAGTCTATTGAAAATTGGAAGGTTTCAGTAAATACTGTGTTCCCCCATGTTCACAACAGATTATCTGCGCCGAAACTTTCCATCGACGAGGCTAATGAAGCCGTAGAAAAGTTTTTGATACAAGCAGGACGACTCATGTCTCTGTAA
Protein
MVNPNKRIMNKKSKQASISSILNFFFFYIMEYFVAVDNETSLGVFTSIEQCEETMKQYPGLHYVVFKYMCPADAENTDVVYLIPSLTLHTPMFVDHCPNRTKQARHVLKKINLVFEEESIENWKVSVNTVFPHVHNRLSAPKLSIDEANEAVEKFLIQAGRLMSL

Summary

Similarity
Belongs to the asfivirus F165R family.
Keywords
Complete proteome   Host membrane   Membrane   Transmembrane   Transmembrane helix   Reference proteome  
Feature
chain  Uncharacterized protein F165R
PDB
6G2I     E-value=7.30353,     Score=72

Ontologies

KEGG

Subcellular Location

From MSLVP
Capsid
From Uniprot
Host membrane  

Topology

Length:
165
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
18.141
Exp number, first 60 AAs:
17.83898
Total prob of N-in:
0.92967
POSSIBLE N-term signal
sequence
inside
1  -  16
TMhelix
17  -  36
outside
37  -  165
 
 

Population Genetic Test Statistics

Pi
0.0305643
Theta
0.0364103
Tajima's D
-0.5343091
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62728.1
China_AnhuiXCGQ_2018 Protein
AYW34018.1
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95822.1
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017 Protein
AXZ96010.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96105.1
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015 Protein
AXB49275.1
Uganda_R7_2015 Protein
AXB49449.1
Uganda_R25_2015 Protein
AXB49621.1
Uganda_N10_2015 Protein
AXB49792.1
Uganda_R35_2015 Protein
AXB49965.1
Estonia_2014 Protein
SPS73469.1
Italy_26544_OG10_2010 Protein
AJZ77149.1
Italy_47_Ss_2008_2008 Protein
AOO54377.1
Portugal_OURT_88.3_1988 Protein
CAN10394.1
Spain_E75_1975 Protein
CBH29147.1
Russia_Georgia_2007 Protein
CBW46712.1
Kenya_Tk1_2005 Protein
AJL34060.1
Kenya_Bus_2006 Protein
AJL34225.1
Russia_Odintsovo_2014    
Portugal_L60_1960 Protein
AIY22237.1
Portugal_NHV_1968 Protein
AIY22396.1
Russia_Kashino_2013    
Benin_1997 Protein
CAN10145.1
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018 Protein
QBH90534.1
China_LN_2018 Protein
QBH90719.1
China_wbBS01_2018 Protein
QDL88077.1
Ukraine_Kyiv_2014 Protein
QED21603.1
Belgium_Etalle_wb_2018 Protein
QED90489.1
Lithuania_LT14_2014 Protein
QEY87852.1
South_Africa_1985 Protein
Protein
QGM12902.1
QGM12902.1
South_Africa_2_2008 Protein
QGM12828.1
Zambia_LIV_1983 Protein
Protein
QGM12708.1
QGM12709.1
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