ASFVdb The African Swine Fever Virus Database
Strain
Zambia_LIV_1983 (Region: Zambia;  Strain: LIV_5_40;  Date: 1983)
Gene
pF1055L
Description
Annotated in NCBI,  F1055L
Location
MN318203.1(+):57595-60624
GenBank Accession
QGM12709.1
 

Sequence

CDS
ATGGTGTATTTTATGTCCATACCGTACACCCAGCACTTTATTATTGTATTTTACAATTGTTTGGGGATCCGTTTTATTACGCTTTTTATGCTTATACTCAAAGCTGTCCGCGCTTATATCATACTGTACAAATTCATCAACGAGTTTTGTCATCAATTGTTCATTGGTCAATATATTACGGTCCTGTACGCATTTATACCCGCACTTACTTATCAGCATATTGGCGTACATATGTGTTTGCAAGCTATATTATATTGCAGATCATGTTGCTCTGCATGTTGCATGGCCCATTGTTGGAAGTTTATTTCCTGTGTTTGTATCATACTGTGCGATTCGTATACTGTTTTTCCGCGGCTTATTTGGACACGGCCAGTGTACTTCTGTTTTGTCATACAACTATTGTATTGTTCAACAAATTTGGGGGTATTTTTATGTCCGTGCCATGCATACAACTCGAGTACTTTATACTTTTCATACGCAAATACGTCTTGCTGGTCTACTGTGTTGCCTTCCTTTATGTTTTGTTTATTTTGTATACCTTTATTGGCATCAATGGTTTCAGCCGAGGCAATGTTTACATACTCCTGGTGCTTATTTTCTATTTTATTGCTTGTATACTGTTTGTCTGTCTCCAGCTTTTCACCCGTCAGTATATACACCTTACCGCCGGTGTCGGCGACCTGTTTATTATATCGTGTTATATACTGTTTTTTTGTTACATGTTGTATCCGCATTGTTTCGAGCCATACATGGTACTATGGAGTTTTATATTATATCGGCCTACCTGTTTCCTTACTATACGTGTACGAAAGCTGGTGTTTGCTTATGGTCTGCAAGAGGGTGTCACGTTTTTGTATCGTGTACATTTCAATGTCTTCGATGGTTTCTGGATACTATTTTTGTTTTCCCTGCAGGCAGATTTTATATCATTTACTTTTTATCTCACGTACACGTCCTATCATTTGTCAACATGTTTCTACATCGCATGTCATATTGTTACAAAAGCCGTATACAACATCAAATCTCTTATCTTCGTATGCAACACCCGCTGCAATCGTGGGCGTATACATATGGATATCAACGAGCCCCCAATATTACGATACATTATTACAATGGGATTCCCGTTCATGTGCAGTGCTTTTACAACTATACAACCCGATTTTTTTTTCCGGAAACTTTTTTTGGATATATGTTTGCAACAGCCGGGCCTCCATTATTGTATTTGTACGGATATCAATTTTTTTGTCTTCTACCAAATCCTTTACAAGGTTATTTATCCAAGTTTCTCGTGTACAGGTGCAATATTACGTGTCATGCTGGGCCTTTTTATATTGTTTCCAGTGCAAGAAGATACGAACATCCCCGCGAAAACGCTGTACAATATTATACGTTCGATTTCCTACGTTTGCGTCCAAGCATATATCATATTTTGCCGTTTCGAGCATCCACATGCAAATGGCAAAAGAGGGAGCAAAGTATTTGTGCAGGCCGCTATTGTATTGTTTACAAATCGATTCTACCTCATCCAAAATATGTACGTCCACAGGCTCGGCTGTGGAGGTTACCCGGAAAAGTGTTTCTACCTGTATGTTGTCTCTTTCGTACCTGTCCAAATCTCCAGTTACTTCACTGTATATTGTGCAATTCGGTACCCGGGACTGTATATTTTTTGTGTACATCTGTCGAAATGTCACAAACCGTATGGTTTGTTGTTTTGCAATACAATTATTGCCGTACTATTTTTGCAAATACTTGCGCAGTTGGACGGTTTTACCTATTTTCATTTGTGCCTTTACAACAAGCGTACGGACTCGTTCATATTCTCGCATACTACTTTCATCATACATGTGTTTTTGTGTATCAGGCAGTTCTTCAAAGAGAATGGACTCATGGACCTCTATGCTCTTTGTCATCACTTGGTCCACATATGTTTCCACAAAATTATTTGTACCGGAAAGGCTGCCCATGTGCAGGCTATGTTTATTGTCATGGCGACAGTGTTGTTACACTTTGTTTCCCGTGTCTCTTACAATTACGGTATTGTCCTTATCATGCATACGCTTACAAATTTCGCAGTATCTTGGACTTGTACGTTTATACAATACTATATTTTTATGCACACGGAGGAAGCAATGTTTTTTACATACTGTTCCTGCAAATTTTATTACCTCTTCAAGTTCACTTTGTTGGATACTATCGCAGGAACTCGGTGTTGTTTCTTTTACATTTGTGCAGATACAAGGTATACACGTCGTTTCAAAGGGGGTTGCTATATGGGTATCACTCTTTTTCGTGGTTGTACTGGTCTCAAACACCTCTGCAAGCTCTTCATTATACATTTTATCACGCATGCTACCTTTTTTATGTGTCCCTATGCTGCGAAAATTTTGCATGCTTTTGTTGTCCTGTGGGTCAACAAAAGGATATACGTGTTTGGGAAGATTTTCTATCACTTTGGATGTATACGCTTTGGCCTCATTATTGTTTATTACTGTGTATGTATATACTATGTTATGCAAGGAGTATTTATGTTCTCGCTTTTTATTTATCCCGATACAATCTGTTACCAAAATTTGTTCACGCGTTACATTGTTGTTATGTGGTATACAATATGTCTCGTACAATACATCCATGTTATCGTTATTTATCATGTCAAGGATGTCATACACATTGTCATCGTCATTGTCATTGTCATCGTCATTGTCATTGTCATCGACATTATCATCAGAGTATGTCTTATTTACCGGGAAGTCGATGTCAAATTTTATGCGCTGTGGCAAAAATCCAAATACCACTTCGTGGAAACACTTCTGCTCAAAGGGCTGTGCCGCCTCCCACTCCCAAAAGTCATCACGATTTGCAAAAACCCTATATACATTATTATATTCATCTCGCACCACGAAGTGTTTCTTTATGGTTTCGAGAGAATATTTATCCTCTACGGCTTCTCCTTGGGAGTTACAGCGAAGAAACTTGTATGTTTCTTGCATTTTGATAATTAAAATTAAATCAATTATGATGCGGCGCTAA
Protein
MVYFMSIPYTQHFIIVFYNCLGIRFITLFMLILKAVRAYIILYKFINEFCHQLFIGQYITVLYAFIPALTYQHIGVHMCLQAILYCRSCCSACCMAHCWKFISCVCIILCDSYTVFPRLIWTRPVYFCFVIQLLYCSTNLGVFLCPCHAYNSSTLYFSYANTSCWSTVLPSFMFCLFCIPLLASMVSAEAMFTYSWCLFSILLLVYCLSVSSFSPVSIYTLPPVSATCLLYRVIYCFFVTCCIRIVSSHTWYYGVLYYIGLPVSLLYVYESWCLLMVCKRVSRFCIVYISMSSMVSGYYFCFPCRQILYHLLFISRTRPIICQHVSTSHVILLQKPYTTSNLLSSYATPAAIVGVYIWISTSPQYYDTLLQWDSRSCAVLLQLYNPIFFSGNFFWIYVCNSRASIIVFVRISIFLSSTKSFTRLFIQVSRVQVQYYVSCWAFLYCFQCKKIRTSPRKRCTILYVRFPTFASKHISYFAVSSIHMQMAKEGAKYLCRPLLYCLQIDSTSSKICTSTGSAVEVTRKSVSTCMLSLSYLSKSPVTSLYIVQFGTRDCIFFVYICRNVTNRMVCCFAIQLLPYYFCKYLRSWTVLPIFICAFTTSVRTRSYSRILLSSYMCFCVSGSSSKRMDSWTSMLFVITWSTYVSTKLFVPERLPMCRLCLLSWRQCCYTLFPVSLTITVLSLSCIRLQISQYLGLVRLYNTIFLCTRRKQCFLHTVPANFITSSSSLCWILSQELGVVSFTFVQIQGIHVVSKGVAIWVSLFFVVVLVSNTSASSSLYILSRMLPFLCVPMLRKFCMLLLSCGSTKGYTCLGRFSITLDVYALASLLFITVYVYTMLCKEYLCSRFLFIPIQSVTKICSRVTLLLCGIQYVSYNTSMLSLFIMSRMSYTLSSSLSLSSSLSLSSTLSSEYVLFTGKSMSNFMRCGKNPNTTSWKHFCSKGCAASHSQKSSRFAKTLYTLLYSSRTTKCFFMVSREYLSSTASPWELQRRNLYVSCILIIKIKSIMMRR

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
6G2I     E-value=7.30353,     Score=72

Ontologies

Subcellular Location

From MSLVP
Capsid

Topology

Length:
1009
Number of predicted TMHs:
14
Exp number of AAs in TMHs:
399.719359999999
Exp number, first 60 AAs:
29.63839
Total prob of N-in:
0.62171
POSSIBLE N-term signal
sequence
inside
1  -  20
TMhelix
21  -  43
outside
44  -  52
TMhelix
53  -  75
inside
76  -  124
TMhelix
125  -  147
outside
148  -  161
TMhelix
162  -  184
inside
185  -  195
TMhelix
196  -  218
outside
219  -  227
TMhelix
228  -  247
inside
248  -  253
TMhelix
254  -  276
outside
277  -  285
TMhelix
286  -  308
inside
309  -  341
TMhelix
342  -  359
outside
360  -  392
TMhelix
393  -  415
inside
416  -  667
TMhelix
668  -  690
outside
691  -  745
TMhelix
746  -  768
inside
769  -  779
TMhelix
780  -  802
outside
803  -  816
TMhelix
817  -  839
inside
840  -  1009
 
 

Population Genetic Test Statistics

Pi
0.0394995
Theta
0.0500616
Tajima's D
-0.7062445
CLR
0.139356
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
 AKO62728.1
China_AnhuiXCGQ_2018 Protein
 AYW34018.1
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017 Protein
 AXZ95822.1
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017 Protein
 AXZ96010.1
Poland_Pol17_04461_C210_2016-2017 Protein
 AXZ96105.1
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015 Protein
 AXB49275.1
Uganda_R7_2015 Protein
 AXB49449.1
Uganda_R25_2015 Protein
 AXB49621.1
Uganda_N10_2015 Protein
 AXB49792.1
Uganda_R35_2015 Protein
 AXB49965.1
Estonia_2014 Protein
 SPS73469.1
Italy_26544_OG10_2010 Protein
 AJZ77149.1
Italy_47_Ss_2008_2008 Protein
 AOO54377.1
Portugal_OURT_88.3_1988 Protein
 CAN10394.1
Spain_E75_1975 Protein
 CBH29147.1
Russia_Georgia_2007 Protein
 CBW46712.1
Kenya_Tk1_2005 Protein
 AJL34060.1
Kenya_Bus_2006 Protein
 AJL34225.1
Russia_Odintsovo_2014    
Portugal_L60_1960 Protein
 AIY22237.1
Portugal_NHV_1968 Protein
 AIY22396.1
Russia_Kashino_2013    
Benin_1997 Protein
 CAN10145.1
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018 Protein
 QBH90534.1
China_LN_2018 Protein
 QBH90719.1
China_wbBS01_2018 Protein
 QDL88077.1
Ukraine_Kyiv_2014 Protein
 QED21603.1
Belgium_Etalle_wb_2018 Protein
 QED90489.1
Lithuania_LT14_2014 Protein
 QEY87852.1
South_Africa_1985 Protein
Protein
 QGM12902.1
QGM12902.1
South_Africa_2_2008 Protein
 QGM12828.1
Zambia_LIV_1983 Protein
Protein
 QGM12708.1
QGM12709.1
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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