ASFVdb The African Swine Fever Virus Database
Strain
Zambia_LIV_1983 (Region: Zambia;  Strain: LIV_5_40;  Date: 1983)
Gene
pH240R
Description
With frameshift mutation but translatable,  pH240R
GenBank Accession
 

Sequence

CDS
ATGGCCAGCAAAAAAGAGCATCAATACTGCCTGCTACACTCCCAGGAAAAGCGTCATGGGCATTATCCCTTTTCATTTGTATTATACCCTTATGGGCAAACAGGCGCAAATATCATACGAGTACAGGGCTCACTTACCCATGTTATCAAAATGTCAGTATTTCCATTTATGTTTCCTTTTCCTTTACAAAAAACTCATATACATGTTTTTATTGGTGGACGCATTTATTTATTTTTTACGAACTGGACATGCAAGCAGTTTCTGTTGTATATGGAATGCAATACCACTTCGAGTTCAAGGTTGTTCCTGTATGCCCCAACCAAGTACAGCTTCTTCCTGTGTATATTATATATATATTTACATATGCTATACCGGTGGTGCAATACCTTACTCCAATCTTTTATGTTCTTTCGGGTCCGCTACATTTCCCATTACATACTCTTTCGGTCCATGTGGATACCCTCTCCAATTATATACAGCTTCCTATCCAAAACCATATCCTATCAACGGGTGTTCGTGTTTTTATTTCTGGATATATACACCTGCAAACGATTGTATTATGTACAAATATCAAGATTTTTATCAAATATATACCGCCGCTTTCATCCAAAAAAATACAACTATATATACCAAAAAATCGAATCAGAATTCCACTATACTTTATATCTTTACAAAACGTCTAAGTATTATCATTTTTATACTCTACTCCTACTTCCGAAATACGCTGTATTTCTTTTTTATGTCCTTTATACCAAGGATGTGTTACAAGACTCTTATACGAAAGCCGCTTATTTTCATTATTTGTTATACATTCCGTGTTATACTGTTTTCCCGTCTCTGCAATGTTCTCGGGAATATATTTTTCCCGTTTCAGAATATCATTTATATACAAATTTTCTGCACGAAATCTACAAAGATTATCCGCGACCATACCTATCGTCCACACAGTTATACGAAGCTGGTACTATTATCCATATTATTACAATTCTGGACACACGTATTCCCATGTTCCAAACATATTATATTGGGGACGGGTTTCGTCTATTCTATCAGCGCTTCCAAAGTCAATGTCCTTATTGTTCTTTTGTTTTATGTCTATATTATGGTTCTCATCCTTATTATCCCCATGGATATACCCCTTCTCATATATGTTTTGTATATTATGTATATGCTGGAATATTATTTTTTTGGCTTCGGTTTCCTCAAGTTTTTTATACTATTGTTATTGTACTACATCAACACTATTTGGAATATATTCTATATTTACTATATGTTACATACCATTTTCGGTATATTCGATATGCTTATTATCACCGGGAGTATCTTGCAGGGCTTTCAACACGATGTCTTCATTTCCTGGAATTTCTTTTTTACAAACGTACTTATATATATTGGGTTGCCCTACTTGTTGTCCCAAAAAGACGTTATTTCTGCCACCCTCAAACATGGGTCTCGTCGCAATGCAATACATGTGCTGCGTTGTGGAGATCCTTTCCACCTTTGCTGTACGATACAACGCATATTGTGCCTGGGGGTTTTTTATCATTTTTTTATGCTGTTGTTCCGGCCTGGACATGTTTTATTACCTTTATATATATACGGTTACAAGGTTTATTTTCAATATATGCCTTATTGTTGGGATTATATTCGTACAAGGTATACCCTATTCCTACGTCTTTGTTTTTTTGGTACAAAAACTGTTTGCCCTCGTACGATATGCTATACGCTTTTACTTCGGCTTTTACAAGCGGTTGGCAGGGATTGGGCAAACGTATATCGCGTTCAAAGTTTTCATGCAAAAGCAAAGCATTTGTGGGCTGTCACATCAGACAGCCGCTTTCGCCATTGTACGCACATTCAATGGCCGCCCTTTTTACTATATCGCGGAAAGCAGAATTATGTTGGCTCTTTTCAAGCCCCCTTTCGTGCAAACGCTCATCAATCGTTTTTTGTTCCTGTCTGCCTTCGGGAATACTATACAACATTTTTTGTTTACCCACCGCGATGTACAAAAAAGGCTGTACGGTTTTCTCCTCGGGCGGTACCGCATCGTGGCTACCAATGCGTATATTGCGCGCCTTCACTTGTTCCTCTCGGGCCTTATCCCAGTACGGCTCTACGATATGTACCTGCCGCCCGTATTTGTGTTCCAATCCCTCAGCTCCCGTTTTACAGACGAGTACAATTTTATTATCCTCTCCGTGTATATTCAGCGGCGAATTCCAAAGCTGCTGGATCATATCGCGCTCTTTACATACAATTTTCCCTGTATTATGCGTATATCGCGATATTTTGGAGGACAGGACTATCGTATGGGTCGGCCCATCTTCGGCAAAGTTTTTCACCATATGTTCTTTCCCATCCTTATGTACGAGGATGGTGTTGTGGCCTTCTTCCAATACTTTTACGGGCTGTACGCACTGGTACCCCTCTATTTCTACAAAGCGGGCCACGACGTGTACGCCCAATTCCACAAACTGTGTGTATATGTGCACAGGGCCCGGAGACGTTTTATTATTTTTTACCATGCGTACTATTTTGGGACTACAATTTTCTGTGTACGCCTCTTTGGGCAGCTGCTGTACAGCCTCTGTTATTTTTTCATCCTCCTTTACGGTTACCATTTCGGACGCGAAGATGCTGTTCATACGGGAACGCACATACTACGAGGAGCCTGTCTCTTGCTCCGATCCTGGCAGGCAGAGGGCGGCGGCATTTATTTTTTCATACATTCCTGTGCTGGCGTGCTTTTCCGCATTTTCAACGTCTCGGGCCAGCAGATATTGCCTATACTGCTCGGGTGTCATTTCAACCTTTTCTATATTATGTGGAAGCTCTGTGGGGAATACCTTGTTGTGCTCATTCTGGTTTCCAGCGTACCTTATCATACCCACTACGCGGTTTACTACTTTGTCCGCGTTTATACGGCTATTCGTTGTTTTATTGTCATATGCGGTGTACAATCTTTCATACTGTACAGGTATTATGTTTCGCCCGCTTACCATATTACAACAGGGCACCATTTCAAAGGGGTCCTTCGAACACGGGGTGCCTGTTACAAACAGAATACGAATATTTTTACCTTGCATATTATTATTGTACAGCTGGCGGGCATTTGTTTTATCATTGGCGCTATTGTTATTTCCTCTATACAGGTTGTGTGTCTCATCAACGATGTTCAGGCATCCGTTTACGGTCCCTCCCGCCTTTATGTTCTGCTGCCCCATGTTGTATGCGTCTACGGACACAAACCTGTACCGCCGTGTGTTTTTTTGTACCTCTTTGGAGTGTTCCGTCGTTTCCGGATATATATGTGTATTATGCTTTACTTGTGTGCAACGACTTGGGTGCGATCAGAATCGGGTTGTATATATGTGCAAGTGTGTTGGCAAGCGACAGGCTCAAAATGGTTTGCCCCATGCCCATCTGGTGTTACATGTGGAGGCCCCGTGTGTTTTCCCCCTGGCCTATCCCAAATTTACGATCCGAAAAGGCGGTGTATATTACAAACTGGTACTATTTCAGTGCTCGTGCAAAACGAGCAGTGTGTGTGGTGTCTTTGCTTTCCTGTACCTCTTTATATTTTTCATATACCTCTTTTACGTATGCTTCTATTTGGACGGGGAAGGAGGTGTTGTTGTGCACGCAAGACATGTCTCGTTATATGGATCCCATATTACAACTTCATTACAAGAATACGGCTGCTGTTACCTACCGCTGCACTTACAAATGGGGTACCCCTTTTTCTTGTATATCCGGTGCCTGTCGTACACCTGGCTACAAAGCGGGCTTACTGTATCTTTATTGTCCACGACGATACGTACCTTTTTTTCATCCGATCCCTGCCGGGTATTACGTCCCAAGATTTGCTCCATGTTGTTTCTGCGGGGCGTTGCCATGTTGTTCGATGTCATATGCTTGTACGAAATGCCTCTACGCCCGTACCCATACGTCAGCAAGATATTGGAAGCGCTGTGTGCCTGTGCAAGAGCGGTATTTGCAACCCCGCCGCATACGAGCGCCACCTCCGGAACGATATTTTGTACATCTTTGTATTCTTTGGAAAGCGCCTGTTACAAAATTTCTACAAGTTTGCGAAATTCCACGAAAATGTTGTTGCCATACGGCTCATCGGTCCCCCATTTGTGTGGCTCAGCGGTATGCAGGGAGTATACCCGCTTTGCCTCATTTACGACAAGTTGTATACGCGAAGGATCTTGTACTACTTTATCAATGGTGGCAATGGCCGATACCTTTTCATTATTACACACAGGGCTATCGAAGTCAGGATGTCCCTGTTATTCGATTTCCCTCACATACCCGGAAAAGGTTGTGGTGGGACTTACAGTCCTCTGGGGCTGTCCTACATGGTGTATATTATTCTTGTCCATACCATCGGGCCGGTCCAGGGGTGTACCGGACAGTCCTATTATCCGACTATGTTGTATTTTCCAAAAAATTTTGTATTTCTCCGGCGAGTGTATTTCATGTGCCTCATCTATCACGACTACACCAAAGGGCTCAAAGAACTGCTCAGGCTTCTTGCGCAGGGTATTATTGTTTCCCACGATGTCGTCGTACTCTTTGCTCGTTATGTCCTTTTTCTTGCACGCTGCATTATTGTATGCAGCTACACGTACGTGGGGCAGGAGCAATGTTACCTCGTCGATCCACTGTATTTGTATCGCCTTGGTGGGCACGATGTCCAGGGTACGGTACAAAAGTTTTTGTATATTGCTGTTCGCAATACGCGTTTTCCCCAAACCGGTATTTACATGTACGTACAAGCGCCCATACGGGGACAGGAGCTTTTTATGTATCTTATCGACCATTTCTTGCTGGTACTTATATACTGGAAATTCTGTTTCAACGCATGGGAGGGCCCGCAGCGACATGGGGCGCGTCGTGTATACCATGTTATACATTTCAAACTGCTTTCGCAGCAATATGGGAAAATATATGTATTCCCCCTGCAGCGTGTACGCAGTTTCCTGTCTTATGGCTATGTGCTTTGGCTGCCCAGGCAATGCCCGCGCCGTATCGGTGTGCGCCTTATGTACGCGCCCGAAATCATGTTGTATTTTACTTTGTACCTTTTTATATTTTATTCCTATTCCAGCAAAGGATATA
Protein
MASKKEHQYCLLHSQEKRHGHYPFSFVLYPYGQTGANIIRVQGSLTHVIKMSVFPFMFPFPLQKTHIHVFIGGRIYLFFTNWTCKQFLLYMECNTTSSSRLFLYAPTKYSFFLCILYIYLHMLYRWCNTLLQSFMFFRVRYISHYILFRSMWIPSPIIYSFLSKTISYQRVFVFLFLDIYTCKRLYYVQISRFLSNIYRRFHPKKYNYIYQKIESEFHYTLYLYKTSKYYHFYTLLLLPKYAVFLFYVLYTKDVLQDSYTKAAYFHYLLYIPCYTVFPSLQCSREYIFPVSEYHLYTNFLHEIYKDYPRPYLSSTQLYEAGTIIHIITILDTRIPMFQTYYIGDGFRLFYQRFQSQCPYCSFVLCLYYGSHPYYPHGYTPSHICFVYYVYAGILFFWLRFPQVFYTIVIVLHQHYLEYILYLLYVTYHFRYIRYAYYHREYLAGLSTRCLHFLEFLFYKRTYIYWVALLVVPKRRYFCHPQTWVSSQCNTCAALWRSFPPLLYDTTHIVPGGFLSFFYAVVPAWTCFITFIYIRLQGLFSIYALLLGLYSYKVYPIPTSLFFWYKNCLPSYDMLYAFTSAFTSGWQGLGKRISRSKFSCKSKAFVGCHIRQPLSPLYAHSMAALFTISRKAELCWLFSSPLSCKRSSIVFCSCLPSGILYNIFCLPTAMYKKGCTVFSSGGTASWLPMRILRAFTCSSRALSQYGSTICTCRPYLCSNPSAPVLQTSTILLSSPCIFSGEFQSCWIISRSLHTIFPVLCVYRDILEDRTIVWVGPSSAKFFTICSFPSLCTRMVLWPSSNTFTGCTHWYPSISTKRATTCTPNSTNCVYMCTGPGDVLLFFTMRTILGLQFSVYASLGSCCTASVIFSSSFTVTISDAKMLFIRERTYYEEPVSCSDPGRQRAAAFIFSYIPVLACFSAFSTSRASRYCLYCSGVISTFSILCGSSVGNTLLCSFWFPAYLIIPTTRFTTLSAFIRLFVVLLSYAVYNLSYCTGIMFRPLTILQQGTISKGSFEHGVPVTNRIRIFLPCILLLYSWRAFVLSLALLLFPLYRLCVSSTMFRHPFTVPPAFMFCCPMLYASTDTNLYRRVFFCTSLECSVVSGYICVLCFTCVQRLGCDQNRVVYMCKCVGKRQAQNGLPHAHLVLHVEAPCVFPLAYPKFTIRKGGVYYKLVLFQCSCKTSSVCGVFAFLYLFIFFIYLFYVCFYLDGEGGVVVHARHVSLYGSHITTSLQEYGCCYLPLHLQMGYPFFLYIRCLSYTWLQSGLTVSLLSTTIRTFFSSDPCRVLRPKICSMLFLRGVAMLFDVICLYEMPLRPYPYVSKILEALCACARAVFATPPHTSATSGTIFCTSLYSLESACYKISTSLRNSTKMLLPYGSSVPHLCGSAVCREYTRFASFTTSCIREGSCTTLSMVAMADTFSLLHTGLSKSGCPCYSISLTYPEKVVVGLTVLWGCPTWCILFLSIPSGRSRGVPDSPIIRLCCIFQKILYFSGECISCASSITTTPKGSKNCSGFLRRVLLFPTMSSYSLLVMSFFLHAALLYAATRTWGRSNVTSSIHCICIALVGTMSRVRYKSFCILLFAIRVFPKPVFTCTYKRPYGDRSFLCILSTISCWYLYTGNSVSTHGRARSDMGRVVYTMLYISNCFRSNMGKYMYSPCSVYAVSCLMAMCFGCPGNARAVSVCALCTRPKSCCILLCTFLYFIPIPAKDI

Summary

Uniprot
ProteinModelPortal
PDB
4R5F     E-value=1.30774,     Score=80

Ontologies

Subcellular Location

From MSLVP
Capsid

Topology

Length:
1710
Number of predicted TMHs:
18
Exp number of AAs in TMHs:
528.820809999999
Exp number, first 60 AAs:
8.23976
Total prob of N-in:
0.79778
inside
1  -  100
TMhelix
101  -  123
outside
124  -  140
TMhelix
141  -  163
inside
164  -  228
TMhelix
229  -  251
outside
252  -  375
TMhelix
376  -  398
inside
399  -  402
TMhelix
403  -  425
outside
426  -  512
TMhelix
513  -  535
inside
536  -  541
TMhelix
542  -  564
outside
565  -  645
TMhelix
646  -  665
inside
666  -  850
TMhelix
851  -  873
outside
874  -  902
TMhelix
903  -  920
inside
921  -  940
TMhelix
941  -  963
outside
964  -  972
TMhelix
973  -  995
inside
996  -  1025
TMhelix
1026  -  1048
outside
1049  -  1057
TMhelix
1058  -  1080
inside
1081  -  1182
TMhelix
1183  -  1205
outside
1206  -  1247
TMhelix
1248  -  1270
inside
1271  -  1443
TMhelix
1444  -  1466
outside
1467  -  1518
TMhelix
1519  -  1541
inside
1542  -  1710
 
 

Population Genetic Test Statistics

Pi
0.0299864
Theta
0.0443727
Tajima's D
-0.9840508
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975 Protein
CAN10223.1
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014 Protein
QED21735.1
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983 Protein
Protein
Protein
Protein
CAN10223.1
QGM12757.1
QGM12938.1
QGM12757.1
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