ASFVdb The African Swine Fever Virus Database
Strain
Ukraine_Kyiv_2014 (Region: Ukraine;  Strain: ASFV/Kyiv/2016/131;  Date: 2014)
Gene
QP383R
Description
Annotated in NCBI,  ASFV_Kyiv_2016_131_00199
GenBank Accession
Full name
NifS-like protein      
 

Sequence

CDS
ATGGCCTCCATTCTCACGCTGGACGGGTTATATGCAGAGGTTCCAAAATTCTTACCAGAGGCGTTACGAGAGGGCTGTGCTGGCAAGAATCCTCTAAGCTTTTATATTCAACAAATTTTAAATTTAATGGGATGTGACGGTAACGAGTACCATGTTCTTTTTACCAGCAGCTCCGAGGAAGCAAATACTCATATGATCATGGCCGCCGTGCGTCGCCATTTGCTGCGGACGCAGCAAAGGCCTCATGTCATTATCGGAGCAGCCGAGCCCCCTAGCGTCACCGAATGTGTGAAGGCATTGGCGCAGGAAAAACGCTGCGTATACACCATCATCCCCCTAAAAAATTTTGAAATAGATCCTGTTGCGGTATACGATGCCATACAAAGCAATACCTGCTTAGCGTGCATTTCAGGCACTAATGCTGTTGTCAAAACGTTCAACAAACTCCAGGACATCAGCAACGTGTTAAAAGGTATTCCCCTGCACTCAGAAGTGAGTGATCTTGTTTATCAAGGATGTATTCAACAAAATCCGCCCGCTGATAGTTTTTCAATAAATAGTCTCTACGGCTTCCTGGGAGTCGGTGTTTTGGGAATGAAGAAAAAGGTCATGCAAGGATTGGGGCCGCTCATTTTTGAGGAGGGCTGA
Protein
MASILTLDGLYAEVPKFLPEALREGCAGKNPLSFYIQQILNLMGCDGNEYHVLFTSSSEEANTHMIMAAVRRHLLRTQQRPHVIIGAAEPPSVTECVKALAQEKRCVYTIIPLKNFEIDPVAVYDAIQSNTCLACISGTNAVVKTFNKLQDISNVLKGIPLHSEVSDLVYQGCIQQNPPADSFSINSLYGFLGVGVLGMKKKVMQGLGPLIFEEG

Summary

Cofactor
pyridoxal 5'-phosphate
Similarity
Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
Keywords
Complete proteome   Pyridoxal phosphate   Reference proteome  
Feature
chain  NifS-like protein
Pfam
PF00266   Aminotran_5
Interpro
IPR015421   PyrdxlP-dep_Trfase_major
IPR015424   PyrdxlP-dep_Trfase
IPR000192   Aminotrans_V_dom
IPR015422   PyrdxlP-dep_Trfase_dom1
SUPFAM
SSF53383   SSF53383
Gene 3D
PDB
4R5F     E-value=1.30774,     Score=80

Ontologies

KEGG

Subcellular Location

From MSLVP
Capsid

Topology

Length:
215
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.19315
Exp number, first 60 AAs:
0.00032
Total prob of N-in:
0.01450
outside
1  -  215
 
 

Population Genetic Test Statistics

Pi
0.0267551
Theta
0.0375462
Tajima's D
-1.3204963
CLR
0.065495
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975 Protein
CAN10223.1
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014 Protein
QED21735.1
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983 Protein
Protein
Protein
Protein
CAN10223.1
QGM12757.1
QGM12938.1
QGM12757.1
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