ASFVdb The African Swine Fever Virus Database
Strain
Zambia_LIV_1983 (Region: Zambia;  Strain: LIV_5_40;  Date: 1983)
Gene
pH240R
Description
Annotated in NCBI,  H240R
GenBank Accession
Full name
Uncharacterized protein H240R       + More
 

Sequence

CDS
ATGGCTTATATATTGGCTGCAACAAGAGCCGCGCCAAAGATGGCCAGCAAAAAAGAGCATCAATACTGCCTGCTACACTCCCAGGAAAAGCGTCATGGGCATTATCCCTTTTCATTTGTATTATACCCTTATGGGCAAACAGGCGCAAATATCATACGAGTACAGGGCTCACTTACCCATGTTATCAAAATGTCAGTATTTCCATTTATGTTTCCTTTTCCTTTACAAAAAACTCATATACATGTTTTTATTGGTGGACGCATTTATTTATTTTTTACGAACTGGACATGCAAGCAGTTTCTGTTGTATATGGAATGCAATACCACTTCGAGTTCAAGGTTGTTCCTGTATGCCCCAACCAAGTACAGCTTCTTCCTGTGTATATTATATATATATTTACATATGCTATACCGGTGGTGCAATACCTTACTCCAATCTTTTATGTTCTTTCGGGTCCGCTACATTTCCCATTACATACTCTTTCGGTCCATGTGGATACCCTCTCCAATTATATACAGCTTCCTATCCAAAACCATATCCTATCAACGGGTGTTCGTGTTTTTATTTCTGGATATATACACCTGCAAACGATTGTATTATGTACAAATATCAAGATTTTTATCAAATATATACCGCCGCTTTCATCCAAAAAAATACAACTATATATACCAAAAAATCGAATCAGAATTCCACTATACTTTATATCTTTACAAAACGTCTAAGTATTATCATTTTTATACTCTACTCCTACTTCCGAAATACGCTGTATTTCTTTTTTATGTCCTTTATACCAAGGATGTGTTACAAGACTCTTATACGAAAGCCGCTTATTTTCATTATTTGTTATACATTCCGTGTTATACTGTTTTCCCGTCTCTGCAATGTTCTCGGGAATATATTTTTCCCGTTTCAGAATATCATTTATATACAAATTTTCTGCACGAAATCTACAAAGATTATCCGCGACCATACCTATCGTCCACACAGTTATACGAAGCTGGTACTATTATCCATATTATTACAATTCTGGACACACGTATTCCCATGTTCCAAACATATTATATTGGGGACGGGTTTCGTCTATTCTATCAGCGCTTCCAAAGTCAATGTCCTTATTGTTCTTTTGTTTTATGTCTATATTATGGTTCTCATCCTTATTATCCCCATGGATATACCCCTTCTCATATATGTTTTGTATATTATGTATATGCTGGAATATTATTTTTTTGGCTTCGGTTTCCTCAAGTTTTTTATACTATTGTTATTGTACTACATCAACACTATTTGGAATATATTCTATATTTACTATATGTTACATACCATTTTCGGTATATTCGATATGCTTATTATCACCGGGAGTATCTTGCAGGGCTTTCAACACGATGTCTTCATTTCCTGGAATTTCTTTTTTACAAACGTACTTATATATATTGGGTTGCCCTACTTGTTGTCCCAAAAAGACGTTATTTCTGCCACCCTCAAACATGGGTCTCGTCGCAATGCAATACATGTGCTGCGTTGTGGAGATCCTTTCCACCTTTGCTGTACGATACAACGCATATTGTGCCTGGGGGTTTTTTATCATTTTTTTATGCTGTTGTTCCGGCCTGGACATGTTTTATTACCTTTATATATATACGGTTACAAGGTTTATTTTCAATATATGCCTTATTGTTGGGATTATATTCGTACAAGGTATACCCTATTCCTACGTCTTTGTTTTTTTGGTACAAAAACTGTTTGCCCTCGTACGATATGCTATACGCTTTTACTTCGGCTTTTACAAGCGGTTGGCAGGGATTGGGCAAACGTATATCGCGTTCAAAGTTTTCATGCAAAAGCAAAGCATTTGTGGGCTGTCACATCAGACAGCCGCTTTCGCCATTGTACGCACATTCAATGGCCGCCCTTTTTACTATATCGCGGAAAGCAGAATTATGTTGGCTCTTTTCAAGCCCCCTTTCGTGCAAACGCTCATCAATCGTTTTTTGTTCCTGTCTGCCTTCGGGAATACTATACAACATTTTTTGTTTACCCACCGCGATGTACAAAAAAGGCTGTACGGTTTTCTCCTCGGGCGGTACCGCATCGTGGCTACCAATGCGTATATTGCGCGCCTTCACTTGTTCCTCTCGGGCCTTATCCCAGTACGGCTCTACGATATGTACCTGCCGCCCGTATTTGTGTTCCAATCCCTCAGCTCCCGTTTTACAGACGAGTACAATTTTATTATCCTCTCCGTGTATATTCAGCGGCGAATTCCAAAGCTGCTGGATCATATCGCGCTCTTTACATACAATTTTCCCTGTATTATGCGTATATCGCGATATTTTGGAGGACAGGACTATCGTATGGGTCGGCCCATCTTCGGCAAAGTTTTTCACCATATGTTCTTTCCCATCCTTATGTACGAGGATGGTGTTGTGGCCTTCTTCCAATACTTTTACGGGCTGTACGCACTGGTACCCCTCTATTTCTACAAAGCGGGCCACGACGTGTACGCCCAATTCCACAAACTGTGTGTATATGTGCACAGGGCCCGGAGACGTTTTATTATTTTTTACCATGCGTACTATTTTGGGACTACAATTTTCTGTGTACGCCTCTTTGGGCAGCTGCTGTACAGCCTCTGTTATTTTTTCATCCTCCTTTACGGTTACCATTTCGGACGCGAAGATGCTGTTCATACGGGAACGCACATACTACGAGGAGCCTGTCTCTTGCTCCGATCCTGGCAGGCAGAGGGCGGCGGCATTTATTTTTTCATACATTCCTGTGCTGGCGTGCTTTTCCGCATTTTCAACGTCTCGGGCCAGCAGATATTGCCTATACTGCTCGGGTGTCATTTCAACCTTTTCTATATTATGTGGAAGCTCTGTGGGGAATACCTTGTTGTGCTCATTCTGGTTTCCAGCGTACCTTATCATACCCACTACGCGGTTTACTACTTTGTCCGCGTTTATACGGCTATTCGTTGTTTTATTGTCATATGCGGTGTACAATCTTTCATACTGTACAGGTATTATGTTTCGCCCGCTTACCATATTACAACAGGGCACCATTTCAAAGGGGTCCTTCGAACACGGGGTGCCTGTTACAAACAGAATACGAATATTTTTACCTTGCATATTATTATTGTACAGCTGGCGGGCATTTGTTTTATCATTGGCGCTATTGTTATTTCCTCTATACAGGTTGTGTGTCTCATCAACGATGTTCAGGCATCCGTTTACGGTCCCTCCCGCCTTTATGTTCTGCTGCCCCATGTTGTATGCGTCTACGGACACAAACCTGTACCGCCGTGTGTTTTTTTGTACCTCTTTGGAGTGTTCCGTCGTTTCCGGATATATATGTGTATTATGCTTTACTTGTGTGCAACGACTTGGGTGCGATCAGAATCGGGTTGTATATATGTGCAAGTGTGTTGGCAAGCGACAGGCTCAAAATGGTTTGCCCCATGCCCATCTGGTGTTACATGTGGAGGCCCCGTGTGTTTTCCCCCTGGCCTATCCCAAATTTACGATCCGAAAAGGCGGTGTATATTACAAACTGGTACTATTTCAGTGCTCGTGCAAAACGAGCAGTGTGTGTGGTGTCTTTGCTTTCCTGTACCTCTTTATATTTTTCATATACCTCTTTTACGTATGCTTCTATTTGGACGGGGAAGGAGGTGTTGTTGTGCACGCAAGACATGTCTCGTTATATGGATCCCATATTACAACTTCATTACAAGAATACGGCTGCTGTTACCTACCGCTGCACTTACAAATGGGGTACCCCTTTTTCTTGTATATCCGGTGCCTGTCGTACACCTGGCTACAAAGCGGGCTTACTGTATCTTTATTGTCCACGACGATACGTACCTTTTTTTCATCCGATCCCTGCCGGGTATTACGTCCCAAGATTTGCTCCATGTTGTTTCTGCGGGGCGTTGCCATGTTGTTCGATGTCATATGCTTGTACGAAATGCCTCTACGCCCGTACCCATACGTCAGCAAGATATTGGAAGCGCTGTGTGCCTGTGCAAGAGCGGTATTTGCAACCCCGCCGCATACGAGCGCCACCTCCGGAACGATATTTTGTACATCTTTGTATTCTTTGGAAAGCGCCTGTTACAAAATTTCTACAAGTTTGCGAAATTCCACGAAAATGTTGTTGCCATACGGCTCATCGGTCCCCCATTTGTGTGGCTCAGCGGTATGCAGGGAGTATACCCGCTTTGCCTCATTTACGACAAGTTGTATACGCGAAGGATCTTGTACTACTTTATCAATGGTGGCAATGGCCGATACCTTTTCATTATTACACACAGGGCTATCGAAGTCAGGATGTCCCTGTTATTCGATTTCCCTCACATACCCGGAAAAGGTTGTGGTGGGACTTACAGTCCTCTGGGGCTGTCCTACATGGTGTATATTATTCTTGTCCATACCATCGGGCCGGTCCAGGGGTGTACCGGACAGTCCTATTATCCGACTATGTTGTATTTTCCAAAAAATTTTGTATTTCTCCGGCGAGTGTATTTCATGTGCCTCATCTATCACGACTACACCAAAGGGCTCAAAGAACTGCTCAGGCTTCTTGCGCAGGGTATTATTGTTTCCCACGATGTCGTCGTACTCTTTGCTCGTTATGTCCTTTTTCTTGCACGCTGCATTATTGTATGCAGCTACACGTACGTGGGGCAGGAGCAATGTTACCTCGTCGATCCACTGTATTTGTATCGCCTTGGTGGGCACGATGTCCAGGGTACGGTACAAAAGTTTTTGTATATTGCTGTTCGCAATACGCGTTTTCCCCAAACCGGTATTTACATGTACGTACAAGCGCCCATACGGGGACAGGAGCTTTTTATGTATCTTATCGACCATTTCTTGCTGGTACTTATATACTGGAAATTCTGTTTCAACGCATGGGAGGGCCCGCAGCGACATGGGGCGCGTCGTGTATACCATGTTATACATTTCAAACTGCTTTCGCAGCAATATGGGAAAATATATGTATTCCCCCTGCAGCGTGTACGCAGTTTCCTGTCTTATGGCTATGTGCTTTGGCTGCCCAGGCAATGCCCGCGCCGTATCGGTGTGCGCCTTATGTACGCGCCCGAAATCATGTTGTATTTTACTTTGTACCTTTTTATATTTTATTCCTATTCCAGCAAAGGATATATTGGCCTCCATTCTCGCACTGGACGGGCTATATGCAGAGGTTCCAAAATTCTTACCAGAGGCGTTACGAGAGGGCTGTGCTGGCAAGAATCCTCTATGCTTTTATATTCAACAAATTTTATATTTATTGGGATGTGTCGGTATCGAGTACCATGTTCTTTTTACCGGCAGCTCTGTGGAAGCAAATACTCATATGTTCATGGCCGCCGTGCGTCGCCATTTGCTGCGGACGCAGCAAAGACCTCATGTCATTATCGGAGCAGCCGAGCCCCCTACCGTCACCGAATGTGTGTACGCATTGGCGCAGGAAAAACGCTGCGTATACACCATCATCCCCCTACAAAATTTTGCAATACATCCTGTTGCGGTATACGATGCCATACAAAGCAATACCTGCTTACCGTGCATTTCAGGCACCAATGCTGTTGTCAAAACGTTCAACAAACTCCAGGACATCAGCAAAGTGTTACAAGGTATTCCCCTGCACTCAGAAGTGTGTGTGCTTGTTTATCAAGGATGTATTATACAAAATCCTCCCGCTGTTACTTTTTCAATATATACTCTCTACGGCTTCTTGGGGGTCGGTGTCTTGGGAATGCAAAAAAAGGTCATGCAAGGATTGGGGCCGCTCATTTTTGGAGGGGGGCTGTGTGGCGGAAGCCCTATTATACCCGGAATTCATGCCATGTATACAACGCTATCCCAGCAAAGGCCTTCCATGCAAAAAATATATACAATACATATGCTGTTCATGCAAACTTTACAAAAACATCAGCATGTGTATCTACCCATACGGGGTGTGTCTGCAGAGGACAGACATACCTGTTGCAAGCCCGAAGGGACTCCCGGGCTATATTTTATTTAG
Protein
MAYILAATRAAPKMASKKEHQYCLLHSQEKRHGHYPFSFVLYPYGQTGANIIRVQGSLTHVIKMSVFPFMFPFPLQKTHIHVFIGGRIYLFFTNWTCKQFLLYMECNTTSSSRLFLYAPTKYSFFLCILYIYLHMLYRWCNTLLQSFMFFRVRYISHYILFRSMWIPSPIIYSFLSKTISYQRVFVFLFLDIYTCKRLYYVQISRFLSNIYRRFHPKKYNYIYQKIESEFHYTLYLYKTSKYYHFYTLLLLPKYAVFLFYVLYTKDVLQDSYTKAAYFHYLLYIPCYTVFPSLQCSREYIFPVSEYHLYTNFLHEIYKDYPRPYLSSTQLYEAGTIIHIITILDTRIPMFQTYYIGDGFRLFYQRFQSQCPYCSFVLCLYYGSHPYYPHGYTPSHICFVYYVYAGILFFWLRFPQVFYTIVIVLHQHYLEYILYLLYVTYHFRYIRYAYYHREYLAGLSTRCLHFLEFLFYKRTYIYWVALLVVPKRRYFCHPQTWVSSQCNTCAALWRSFPPLLYDTTHIVPGGFLSFFYAVVPAWTCFITFIYIRLQGLFSIYALLLGLYSYKVYPIPTSLFFWYKNCLPSYDMLYAFTSAFTSGWQGLGKRISRSKFSCKSKAFVGCHIRQPLSPLYAHSMAALFTISRKAELCWLFSSPLSCKRSSIVFCSCLPSGILYNIFCLPTAMYKKGCTVFSSGGTASWLPMRILRAFTCSSRALSQYGSTICTCRPYLCSNPSAPVLQTSTILLSSPCIFSGEFQSCWIISRSLHTIFPVLCVYRDILEDRTIVWVGPSSAKFFTICSFPSLCTRMVLWPSSNTFTGCTHWYPSISTKRATTCTPNSTNCVYMCTGPGDVLLFFTMRTILGLQFSVYASLGSCCTASVIFSSSFTVTISDAKMLFIRERTYYEEPVSCSDPGRQRAAAFIFSYIPVLACFSAFSTSRASRYCLYCSGVISTFSILCGSSVGNTLLCSFWFPAYLIIPTTRFTTLSAFIRLFVVLLSYAVYNLSYCTGIMFRPLTILQQGTISKGSFEHGVPVTNRIRIFLPCILLLYSWRAFVLSLALLLFPLYRLCVSSTMFRHPFTVPPAFMFCCPMLYASTDTNLYRRVFFCTSLECSVVSGYICVLCFTCVQRLGCDQNRVVYMCKCVGKRQAQNGLPHAHLVLHVEAPCVFPLAYPKFTIRKGGVYYKLVLFQCSCKTSSVCGVFAFLYLFIFFIYLFYVCFYLDGEGGVVVHARHVSLYGSHITTSLQEYGCCYLPLHLQMGYPFFLYIRCLSYTWLQSGLTVSLLSTTIRTFFSSDPCRVLRPKICSMLFLRGVAMLFDVICLYEMPLRPYPYVSKILEALCACARAVFATPPHTSATSGTIFCTSLYSLESACYKISTSLRNSTKMLLPYGSSVPHLCGSAVCREYTRFASFTTSCIREGSCTTLSMVAMADTFSLLHTGLSKSGCPCYSISLTYPEKVVVGLTVLWGCPTWCILFLSIPSGRSRGVPDSPIIRLCCIFQKILYFSGECISCASSITTTPKGSKNCSGFLRRVLLFPTMSSYSLLVMSFFLHAALLYAATRTWGRSNVTSSIHCICIALVGTMSRVRYKSFCILLFAIRVFPKPVFTCTYKRPYGDRSFLCILSTISCWYLYTGNSVSTHGRARSDMGRVVYTMLYISNCFRSNMGKYMYSPCSVYAVSCLMAMCFGCPGNARAVSVCALCTRPKSCCILLCTFLYFIPIPAKDILASILALDGLYAEVPKFLPEALREGCAGKNPLCFYIQQILYLLGCVGIEYHVLFTGSSVEANTHMFMAAVRRHLLRTQQRPHVIIGAAEPPTVTECVYALAQEKRCVYTIIPLQNFAIHPVAVYDAIQSNTCLPCISGTNAVVKTFNKLQDISKVLQGIPLHSEVCVLVYQGCIIQNPPAVTFSIYTLYGFLGVGVLGMQKKVMQGLGPLIFGGGLCGGSPIIPGIHAMYTTLSQQRPSMQKIYTIHMLFMQTLQKHQHVYLPIRGVSAEDRHTCCKPEGTPGLYFIX

Summary

Similarity
Belongs to the asfivirus H240R family.
Keywords
Complete proteome   Reference proteome  
Feature
chain  Uncharacterized protein H240R
PDB
4R5F     E-value=1.30774,     Score=80

Ontologies

KEGG

Subcellular Location

From MSLVP
Capsid

Topology

Length:
2011
Number of predicted TMHs:
24
Exp number of AAs in TMHs:
602.9443
Exp number, first 60 AAs:
2.76199
Total prob of N-in:
0.66090
Length:
2010
Number of predicted TMHs:
24
Exp number of AAs in TMHs:
602.911310000001
Exp number, first 60 AAs:
2.76199
Total prob of N-in:
0.66090
inside
1  -  113
TMhelix
114  -  136
outside
137  -  153
TMhelix
154  -  176
inside
177  -  241
TMhelix
242  -  264
outside
265  -  388
TMhelix
389  -  411
inside
412  -  415
TMhelix
416  -  438
outside
439  -  525
TMhelix
526  -  548
inside
549  -  554
TMhelix
555  -  577
outside
578  -  658
TMhelix
659  -  678
inside
679  -  863
TMhelix
864  -  886
outside
887  -  915
TMhelix
916  -  933
inside
934  -  953
TMhelix
954  -  976
outside
977  -  985
TMhelix
986  -  1008
inside
1009  -  1038
TMhelix
1039  -  1061
outside
1062  -  1070
TMhelix
1071  -  1093
inside
1094  -  1195
TMhelix
1196  -  1218
outside
1219  -  1260
TMhelix
1261  -  1283
inside
1284  -  1456
TMhelix
1457  -  1479
outside
1480  -  1531
TMhelix
1532  -  1554
inside
1555  -  1616
TMhelix
1617  -  1639
outside
1640  -  1672
TMhelix
1673  -  1695
inside
1696  -  1707
TMhelix
1708  -  1730
outside
1731  -  1761
TMhelix
1762  -  1784
inside
1785  -  1902
TMhelix
1903  -  1922
outside
1923  -  1931
TMhelix
1932  -  1954
inside
1955  -  2011
inside
1  -  113
TMhelix
114  -  136
outside
137  -  153
TMhelix
154  -  176
inside
177  -  241
TMhelix
242  -  264
outside
265  -  388
TMhelix
389  -  411
inside
412  -  415
TMhelix
416  -  438
outside
439  -  525
TMhelix
526  -  548
inside
549  -  554
TMhelix
555  -  577
outside
578  -  658
TMhelix
659  -  678
inside
679  -  863
TMhelix
864  -  886
outside
887  -  915
TMhelix
916  -  933
inside
934  -  953
TMhelix
954  -  976
outside
977  -  985
TMhelix
986  -  1008
inside
1009  -  1038
TMhelix
1039  -  1061
outside
1062  -  1070
TMhelix
1071  -  1093
inside
1094  -  1195
TMhelix
1196  -  1218
outside
1219  -  1260
TMhelix
1261  -  1283
inside
1284  -  1456
TMhelix
1457  -  1479
outside
1480  -  1531
TMhelix
1532  -  1554
inside
1555  -  1616
TMhelix
1617  -  1639
outside
1640  -  1672
TMhelix
1673  -  1695
inside
1696  -  1707
TMhelix
1708  -  1730
outside
1731  -  1761
TMhelix
1762  -  1784
inside
1785  -  1902
TMhelix
1903  -  1922
outside
1923  -  1931
TMhelix
1932  -  1954
inside
1955  -  2010
 
 

Population Genetic Test Statistics

Pi
0.0304588
Theta
0.0443727
Tajima's D
-0.9832574
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975 Protein
CAN10223.1
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014 Protein
QED21735.1
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983 Protein
Protein
Protein
Protein
CAN10223.1
QGM12757.1
QGM12938.1
QGM12757.1
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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