ASFVdb The African Swine Fever Virus Database
Strain
China_wbBS01_2018 (Region: China, Jilin;  Strain: ASFV-wbBS01;  Date: 2018)
Gene
C122R
Description
Annotated in NCBI,  C122R
GenBank Accession
Full name
Uncharacterized protein C122R      
 

Sequence

CDS
ATGAAAATTTGTAAGGCTTGCAGTTCTTGTATGGTCAGAACCTATGTCGATGGAAACATTATTTTTCGCTGCAGCTGCGGCGAAAGCGTTCAAGGGGATAGTCAGAACTTGCTCGTCTCTAGCAAGGTGTACCACACCGGGGAAATGGAAGATAAGTACAAGATTTTTATTAAAAATGCACCCTTTGACCCCACGAATTGCCAAATAAAAAAGGATTGCCCAAATTGTCATTTAGACTATTTGACACAAATCTGTATTGGAAGCCAAAAAATCATTATATTGGTGTGCCGCTGTGGCTATATGAGCAACAGAGGATAA
Protein
MKICKACSSCMVRTYVDGNIIFRCSCGESVQGDSQNLLVSSKVYHTGEMEDKYKIFIKNAPFDPTNCQIKKDCPNCHLDYLTQICIGSQKIIILVCRCGYMSNRG

Summary

Similarity
Belongs to the asfivirus C122R family.
Keywords
Complete proteome   Reference proteome  
Feature
chain  Uncharacterized protein C122R

Ontologies

KEGG

Subcellular Location

From MSLVP
Single-Pass Membrane

Topology

Length:
105
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.06828
Exp number, first 60 AAs:
0.00039
Total prob of N-in:
0.64677
inside
1  -  105
 
 

Population Genetic Test Statistics

Pi
0.0208252
Theta
0.0307196
Tajima's D
-0.9197781
CLR
0.105831
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62747.1
China_AnhuiXCGQ_2018 Protein
AYW34036.1
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95840.1
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017 Protein
AXZ96028.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96123.1
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015 Protein
AXB49294.1
Uganda_R7_2015 Protein
AXB49468.1
Uganda_R25_2015 Protein
AXB49640.1
Uganda_N10_2015 Protein
AXB49811.1
Uganda_R35_2015 Protein
AXB49984.1
Estonia_2014 Protein
SPS73488.1
Italy_26544_OG10_2010 Protein
AJZ77171.1
Italy_47_Ss_2008_2008 Protein
AOO54399.1
Portugal_OURT_88.3_1988 Protein
CAN10413.1
Spain_E75_1975 Protein
CBH29166.1
Russia_Georgia_2007 Protein
CBW46731.1
Kenya_Tk1_2005 Protein
AJL34079.1
Kenya_Bus_2006 Protein
AJL34244.1
Russia_Odintsovo_2014    
Portugal_L60_1960 Protein
AIY22257.1
Portugal_NHV_1968 Protein
AIY22415.1
Russia_Kashino_2013    
Benin_1997 Protein
CAN10165.1
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018 Protein
QBH90553.1
China_LN_2018 Protein
QBH90738.1
China_wbBS01_2018 Protein
QDL88096.1
Ukraine_Kyiv_2014 Protein
Protein
QED21633.1
QED21635.1
Belgium_Etalle_wb_2018 Protein
QED90508.1
Lithuania_LT14_2014 Protein
QEY87871.1
South_Africa_1985 Protein
Protein
QGM12916.1
QGM12917.1
South_Africa_2_2008 Protein
QGM12842.1
Zambia_LIV_1983 Protein
Protein
Protein
CAN10164.1
QGM12725.1
QGM12725.1
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