ASFVdb The African Swine Fever Virus Database
Strain
Benin_1997 (Region: Benin;  Strain: Benin 97/1;  Date: 1997)
Gene
pC122R
Description
Annotated in NCBI,  VOCs Family: Unknown (BA71V-C122R)
GenBank Accession
Full name
Uncharacterized protein C122R      
 

Sequence

CDS
ATGAAAATTTGTAAGGCTTGCAGTTCTTGTATGGTCAGAACCTATGTCGATGGAAACATTATTTTTCGCTGCAGCTGCGGCGAAAGCGTTCAAGGGGATAGTCAAAACTTGCTCGTCTCTAGCAAGGTGTACCACACCGGGGAAATGGAAGATAAGTACAAGATTTTTATTAAAAATGCACCCTTTGACCCCACGAATTGCCAAATAAAAAAGGATTGCCCGAATTGTCATTTAGACTATTTGACACAAATCTGTATTGGAAGCCAAAAAATCATTATATTGGTGTGCCGCTGTGGCTATATGAGCAACAGAGGATAA
Protein
MKICKACSSCMVRTYVDGNIIFRCSCGESVQGDSQNLLVSSKVYHTGEMEDKYKIFIKNAPFDPTNCQIKKDCPNCHLDYLTQICIGSQKIIILVCRCGYMSNRG

Summary

Similarity
Belongs to the asfivirus C122R family.
Keywords
Complete proteome   Reference proteome  
Feature
chain  Uncharacterized protein C122R

Ontologies

KEGG

Subcellular Location

From MSLVP
Single-Pass Membrane

Topology

Length:
105
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.06828
Exp number, first 60 AAs:
0.00039
Total prob of N-in:
0.64677
inside
1  -  105
 
 

Population Genetic Test Statistics

Pi
0.0183225
Theta
0.023893
Tajima's D
-0.516542
CLR
0.272319
Interpretation
No evidence of Selection

Genomic alignment in the CDS region

 
 

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62747.1
China_AnhuiXCGQ_2018 Protein
AYW34036.1
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95840.1
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017 Protein
AXZ96028.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96123.1
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015 Protein
AXB49294.1
Uganda_R7_2015 Protein
AXB49468.1
Uganda_R25_2015 Protein
AXB49640.1
Uganda_N10_2015 Protein
AXB49811.1
Uganda_R35_2015 Protein
AXB49984.1
Estonia_2014 Protein
SPS73488.1
Italy_26544_OG10_2010 Protein
AJZ77171.1
Italy_47_Ss_2008_2008 Protein
AOO54399.1
Portugal_OURT_88.3_1988 Protein
CAN10413.1
Spain_E75_1975 Protein
CBH29166.1
Russia_Georgia_2007 Protein
CBW46731.1
Kenya_Tk1_2005 Protein
AJL34079.1
Kenya_Bus_2006 Protein
AJL34244.1
Russia_Odintsovo_2014    
Portugal_L60_1960 Protein
AIY22257.1
Portugal_NHV_1968 Protein
AIY22415.1
Russia_Kashino_2013    
Benin_1997 Protein
CAN10165.1
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018 Protein
QBH90553.1
China_LN_2018 Protein
QBH90738.1
China_wbBS01_2018 Protein
QDL88096.1
Ukraine_Kyiv_2014 Protein
Protein
QED21633.1
QED21635.1
Belgium_Etalle_wb_2018 Protein
QED90508.1
Lithuania_LT14_2014 Protein
QEY87871.1
South_Africa_1985 Protein
Protein
QGM12916.1
QGM12917.1
South_Africa_2_2008 Protein
QGM12842.1
Zambia_LIV_1983 Protein
Protein
Protein
CAN10164.1
QGM12725.1
QGM12725.1
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号

In processing...
Login to ASFVdb
Email
Password
Please go to Regist if without an account.
If you have forgotten your password, you can once again Regist an account with a registed or new email.
Change my password
Enter new password
Reenter new password
Regist an account of ASFVdb
It is required that you provide your institutional e-mail address (with edu or org in the domain) as confirmation of your affiliation.
Enter email
Reenter email
First Name
Last Name
Institution
You can directly go to if with an account.
Registraion Success
Your password has been sent to your email.
Please check it and login later.
Welcome to use ASFVdb.