Strain

Uganda_R35_2015 (Region: Uganda, Tororo district; Strain: R35; Date: 2015)

Gene

pC105R

Description

Annotated in NCBI, pC105R

Location

MH025920.1(+):82942-83259

GenBank Accession

AXB49984.1

Full name

Uncharacterized protein C122R

Sequence

CDS

ATGAAAATTTGTAAGGCTTGCAGTTCTTGTATGGTAAGAACCTATGTCGATGGCAACATTATTTTTCGCTGCAGCTGCGGCGAAAGCGTTCAAGGGGACAGTCAGAACTTGCTCGTCTCTAGCAAAGTGTATCACACTGGGGAAATGGAAGATAAGTACAAGATTTTTATTAAAAATGCACCCTTTGACCCCACGAATTGCCAAATAAAAAAGGATTGCCCAAATTGTCATTTAGACTATTTGACGCAAATCTGCATTGGAAGCCAAAAAATTATTATACTGGTGTGTCGCTGTGGCTACACAAGCAACAGGGGATAA

Protein

MKICKACSSCMVRTYVDGNIIFRCSCGESVQGDSQNLLVSSKVYHTGEMEDKYKIFIKNAPFDPTNCQIKKDCPNCHLDYLTQICIGSQKIIILVCRCGYTSNRG

Summary

Similarity

Belongs to the asfivirus C122R family.

Keywords

Complete proteome Reference proteome

Feature

chain Uncharacterized protein C122R

Uniprot

A0A0C5AWB2 P0CA25 P0CA24 P0CA23 P0CA22 A9JL15 + More
D4I5Q3 A9JLT8 E0WMK3 A0A0A1DYD1 Q65157 A0A1X6WEZ5 A0A141ZMS2 A0A1X7QG66 A0A1X7BZC8 A0A0H3TLM9

Pubmed

25645905 18198370 21470447 25406173 26618713 11831707 + More
26903952 25878099

EMBL

KM111294 KM111295 MH025916 MH025917 MH025918 MH025919 + More
MH025920 AJL34079.1 AJL34244.1 AXB49294.1 AXB49468.1 AXB49640.1 AXB49811.1 AXB49984.1 AY261366 AY261363 AY261361 AY261360 AM712239 CAN10165.1 FN557520 CBH29166.1 AM712240 CAN10413.1 FR682468 CBW46731.1 KM262844 KM262845 KM102979 KP055815 KX354450 MG939583 MG939587 MG939588 LS478113 AIY22257.1 AIY22415.1 AJZ77171.1 AKO62747.1 AOO54399.1 AXZ95840.1 AXZ96028.1 AXZ96123.1 SPS73488.1 U18466 LT706986 SIP85872.1 KU702949 KU702951 KU556803 AMN83794.1 AMN84540.1 AMP44317.1 CZDJ02000003 SMH63313.1 LT839607 SME64787.1 KJ614390 KU702952 AIB51826.1 AMN85028.1

Proteomes

UP000101566 UP000105860 UP000000858 UP000000859 UP000000860 UP000000861 + More
UP000130745 UP000101090 UP000108903 UP000141072 UP000110401 UP000117635 UP000142390 UP000241813 UP000266411 UP000000624 UP000201921 UP000244556 UP000244783 UP000244814 UP000244774 UP000244833

ProteinModelPortal

A0A0C5AWB2 P0CA25 P0CA24 P0CA23 P0CA22 A9JL15 + More
D4I5Q3 A9JLT8 E0WMK3 A0A0A1DYD1 Q65157 A0A1X6WEZ5 A0A141ZMS2 A0A1X7QG66 A0A1X7BZC8 A0A0H3TLM9

Ontologies

KEGG

vg:22220295

GO:0003899 F:DNA-directed 5'-3' RNA polymerase activity

Subcellular Location

From MSLVP

Single-Pass Membrane

Topology

Length:

105

Number of predicted TMHs:

Exp number of AAs in TMHs:

0.03276

Exp number, first 60 AAs:

0.00036

Total prob of N-in:

0.61875

inside

1 - 105

Population Genetic Test Statistics

0.0208252

Theta

0.0307196

Tajima's D

-0.5684963

CLR

0.207346

Interpretation

No evidence of Selection

Multiple alignment of Orthologues

Gene Tree

Orthologous in Strains

Strain	Status	Gene
Spain_BA71_1971	Protein	AKO62747.1
China_AnhuiXCGQ_2018	Protein	AYW34036.1
China_ASFV-SY18_2018
Poland_Pol16_20186_o7_2016-2017	Protein	AXZ95840.1
Poland_Pol16_20538_o9_2016-2017
Poland_Pol16_20540_o10_2016-2017
Poland_Pol16_29413_o23_2016-2017
Poland_Pol17_03029_C201_2016-2017	Protein	AXZ96028.1
Poland_Pol17_04461_C210_2016-2017	Protein	AXZ96123.1
Poland_Pol17_05838_C220_2016-2017
Poland_ASFV_POL_Podlaskie_2015
Uganda_R8_2015	Protein	AXB49294.1
Uganda_R7_2015	Protein	AXB49468.1
Uganda_R25_2015	Protein	AXB49640.1
Uganda_N10_2015	Protein	AXB49811.1
Uganda_R35_2015	Protein	AXB49984.1
Estonia_2014	Protein	SPS73488.1
Italy_26544_OG10_2010	Protein	AJZ77171.1
Italy_47_Ss_2008_2008	Protein	AOO54399.1
Portugal_OURT_88.3_1988	Protein	CAN10413.1
Spain_E75_1975	Protein	CBH29166.1
Russia_Georgia_2007	Protein	CBW46731.1
Kenya_Tk1_2005	Protein	AJL34079.1
Kenya_Bus_2006	Protein	AJL34244.1
Russia_Odintsovo_2014
Portugal_L60_1960	Protein	AIY22257.1
Portugal_NHV_1968	Protein	AIY22415.1
Russia_Kashino_2013
Benin_1997	Protein	CAN10165.1
South_Africa_KNP_Pretorisuskop_1996
South_Africa_MGR_Mkuzi_1979
Malawi_Lil_1983
Kenya_1950
Namibia_Warthog_1980
South_Africa_Warmbaths_1987
Malawi_Tengani_1962
China_HLJ_2018	Protein	QBH90553.1
China_LN_2018	Protein	QBH90738.1
China_wbBS01_2018	Protein	QDL88096.1
Ukraine_Kyiv_2014	Protein Protein	QED21633.1 QED21635.1
Belgium_Etalle_wb_2018	Protein	QED90508.1
Lithuania_LT14_2014	Protein	QEY87871.1
South_Africa_1985	Protein Protein	QGM12916.1 QGM12917.1
South_Africa_2_2008	Protein	QGM12842.1
Zambia_LIV_1983	Protein Protein Protein	CAN10164.1 QGM12725.1 QGM12725.1