ASFVdb The African Swine Fever Virus Database
Strain
Uganda_R35_2015 (Region: Uganda, Tororo district;  Strain: R35;  Date: 2015)
Gene
D1133L
Description
With frameshift mutation but translatable,  D1133L
GenBank Accession
Full name
Putative ATP-dependent RNA helicase D1133L      
 

Sequence

CDS
ATGCTTAATATTAATGTCAAACGAAAAGAAAACGACATCGTCATAGGCTATATGGAAAGCAAGGGAAAAACCCTTAAATTTAAAATTCGCCCACCCATACAGGTTTTAAAAAAGAATGAGATTACTGATATTCGCATGCTAAATAGGGGAGCCGTATGCGAAACACGCGGACGGGAGGAGCAACAAAAAATTGCTGACCAATTGGGCATCAGTTTAAATCTTACAAAAATTAGTGCCATTAAGCTCTGCTTACTCATTCGCAACACCCTTTTGCAAAAAGAAATGGAAGCTCGTAATCAACCAAATGGGATGCAGGATGGAATCCGCTGGTTTTACCTTTTTAACGACAAAATGCCGTCCCTTGTACACACATCTTAG
Protein
MLNINVKRKENDIVIGYMESKGKTLKFKIRPPIQVLKKNEITDIRMLNRGAVCETRGREEQQKIADQLGISLNLTKISAIKLCLLIRNTLLQKEMEARNQPNGMQDGIRWFYLFNDKMPSLVHTS

Summary

Catalytic Activity
ATP + H2O = ADP + H(+) + phosphate
Similarity
Belongs to the DEAD box helicase family. DEAH subfamily.
Keywords
ATP-binding   Complete proteome   Helicase   Hydrolase   Nucleotide-binding   Reference proteome  
Feature
chain  Putative ATP-dependent RNA helicase D1133L
Pfam
PF00271   Helicase_C
Interpro
IPR001650   Helicase_C
IPR027417   P-loop_NTPase
IPR014001   Helicase_ATP-bd
SUPFAM
SSF52540   SSF52540
PDB
6RFL     E-value=2.26771e-07,     Score=136

Ontologies

KEGG

Subcellular Location

From MSLVP
Single-Pass Membrane

Topology

Length:
125
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.10011
Exp number, first 60 AAs:
0
Total prob of N-in:
0.46835
outside
1  -  125
 
 

Population Genetic Test Statistics

Pi
0.0279612
Theta
0.0352725
Tajima's D
-0.7594827
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
Protein
Protein
QED21706.1
QED21709.1
AKO62787.1
China_AnhuiXCGQ_2018 Protein
Protein
Protein
QED21706.1
QED21709.1
AYW34077.1
China_ASFV-SY18_2018 Protein
AKO62787.1
Poland_Pol16_20186_o7_2016-2017 Protein
Protein
Protein
QED21706.1
QED21709.1
AXZ95880.1
Poland_Pol16_20538_o9_2016-2017 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
Poland_Pol16_20540_o10_2016-2017 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
Poland_Pol16_29413_o23_2016-2017 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
Poland_Pol17_03029_C201_2016-2017 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
Poland_Pol17_04461_C210_2016-2017 Protein
Protein
Protein
QED21706.1
QED21709.1
AXZ96163.1
Poland_Pol17_05838_C220_2016-2017 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
Poland_ASFV_POL_Podlaskie_2015 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
Uganda_R8_2015 Protein
Protein
Protein
QED21706.1
QED21709.1
AXB49334.1
Uganda_R7_2015 Protein
Protein
Protein
QED21706.1
QED21709.1
AXB49508.1
Uganda_R25_2015 Protein
Protein
Protein
QED21706.1
QED21709.1
AXB49680.1
Uganda_N10_2015 Protein
Protein
Protein
QED21706.1
QED21709.1
AXB49851.1
Uganda_R35_2015 Protein
Protein
Protein
QED21706.1
QED21709.1
AXB50024.1
Estonia_2014 Protein
Protein
Protein
QED21706.1
QED21709.1
SPS73529.1
Italy_26544_OG10_2010 Protein
Protein
Protein
QED21706.1
QED21709.1
AJZ77045.1
Italy_47_Ss_2008_2008 Protein
Protein
Protein
QED21706.1
QED21709.1
AOO54464.1
Portugal_OURT_88.3_1988 Protein
Protein
Protein
QED21706.1
QED21709.1
CAN10455.1
Spain_E75_1975 Protein
Protein
QED21706.1
CBH29206.1
Russia_Georgia_2007 Protein
Protein
Protein
QED21706.1
QED21709.1
CBW46772.1
Kenya_Tk1_2005 Protein
Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
AJL34119.1
Kenya_Bus_2006 Protein
Protein
Protein
QED21706.1
QED21709.1
AJL34284.1
Russia_Odintsovo_2014 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
Portugal_L60_1960 Protein
Protein
Protein
QED21706.1
QED21709.1
AIY22297.1
Portugal_NHV_1968 Protein
Protein
Protein
QED21706.1
QED21709.1
AIY22455.1
Russia_Kashino_2013 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
Benin_1997 Protein
Protein
Protein
QED21706.1
QED21709.1
CAN10205.1
South_Africa_KNP_Pretorisuskop_1996 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
South_Africa_MGR_Mkuzi_1979 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
Malawi_Lil_1983 Protein
QED21706.1
Kenya_1950 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
Namibia_Warthog_1980 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
South_Africa_Warmbaths_1987 Genetic Remain
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
Malawi_Tengani_1962 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
China_HLJ_2018 Protein
Protein
QED21709.1
QBH90594.1
China_LN_2018 Protein
Protein
QED21709.1
QBH90779.1
China_wbBS01_2018 Protein
Protein
Protein
QED21706.1
QED21709.1
QDL88137.1
Ukraine_Kyiv_2014 Protein
Protein
QED21707.1
QED21708.1
Belgium_Etalle_wb_2018 Protein
Protein
Protein
QED21706.1
QED21709.1
QED90549.1
Lithuania_LT14_2014 Protein
Protein
Protein
QED21706.1
QED21709.1
QEY87912.1
South_Africa_1985 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
South_Africa_2_2008 Protein
Protein
Protein
AJL34119.1
QED21706.1
QED21709.1
Zambia_LIV_1983 Protein
Protein
QED21706.1
QED21709.1
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