ASFVdb The African Swine Fever Virus Database
Strain
Uganda_R35_2015 (Region: Uganda, Tororo district;  Strain: R35;  Date: 2015)
Gene
pB602L
Description
Annotated in NCBI,  contains highly variable tandem repeats
GenBank Accession
Full name
Protein B602L      
 

Sequence

CDS
ATGGCAGAATTTAATATTGATGAGCTTCTCAAAAACGTATTGGAGGATCCCTCCACTGAAATATCCGAAGAAACGCTTAAGCAACTTTATCAAAAAACAAATCCTTATAAACAGTTTAAAAATGATAGCAGGGTGGCCTTTTGCTCCTTTACAAATTTGCGGGAGCAGTATATTCGACGTCTTATAATGACTAGTTTTATTGGATACGTCTTCAAAGCTCTGCAGGAATGGATGCCCTCCTATTCAAAACCCACCTACACGACCAAAACGCTTCTCAGCGAGCTAATAACATTAGTTGATACTTTGAAACAGGAAACTAATGATGTTCCCTCTGAATCGGTAGTAAATACACTTTTATCTATAGCAGACAACTGCAAAACTCAAACACAGAAAAGCAAGGAAGCTAAAACAACAATCGACAGCTTTTTACGGGAACATTTTGTGTTTGATCCTAATCTTCATGCTCAAAGTGCGTATACCTGTGCAAGCACTTGTGCAAGCACTTGTGCAAGCACTTGTGCAAGCACTTGTGCAGACACCAATGTAGACACTTGTGCAAGCACTTGTGCAGACACTTGTGCAGACACCAATGTAGACACTTGTGCAAGCACTTGTGCAGATACTTGTGCAGACACTTGTGTAAGCACTTGTGTAAGCACTTGTGCAGATACTTGTGCAGACACCAATGTAGACACTTGTGCAAGCACTTGTGCAGACACCAATGTAGACACTTGTGTAAGCACTTGTGCAGACACCTGTGCAAGCACAGAATACACCGATTTAATGGATCCTGAGCGCATCCCTTTACACATCATGCAAAAAACATTAAATGTACCTAATGAGCTTCAGGCCGATATTGATGCAATCACTCAAACCCCACAGGGCTATAGGGCAGCAGCCCACATATTACAAAATATAGAACTTCACCAAAGCATAAAACATATGCTTGAAAATCCAAAGGTATTTAAACCCATTCTCTTTAATACAAAAATTACTAGATATCTTTCGCAACACATTCCACCTCAGGATACGTTTTATAAATGGAATTATTACATTGAGGATAATTACGAAGAGTTGCGGGCCGCTACGGAAAGCATCTACCCAGAAAAACCCGACCTAGAGTTTGCCTTTATTATTTATGATGTGGTGGATAGTAGTAGTAACCAGCAAAAGATTGATGAATTTTATTATAAATATAAAGACCAGATTTTCTCAGAGGTTTCATCCATTCAATTAGGCAACTGGACACTTCTGGGAAGCTTTAAGGCCAACAGAGAGCGCTACAACTATTTTAATCAAAATAATGAAATAATAAAACGGATTTTGGACCGTCATGAGGAAGATCTAAAAATAGGAAAAGAGATTTTACGAAATACCATTTACCACAAAAAAGCAAAAAATATACAAGAAACTGGCCCGGATGCTCCAGGGCTCTCCATCTATAATTCAACCTTTCACACAGACAGCGGGATTAAGGGACTGCTTTCCTTTAAGGAGCTAAAAAATCTAGAGAAAGCATCTGGAAATATCAAAAAAGCTCGAGAGTATGATTTCATAGATGACTGCGAAGAAAAAATCAAGCAGCTGCTTAGTAAAGAAAATTTAACCCCCGATGAAAAAAGCCAGCTGGAAAAAACAAAAAAACAGTTAGAAAATGCGCTTGAAATGCTCAATGTGCCTGATGATACGATACGGGTGGATATGTGGGTCAACAATAATAACAAACTCGAAAAAGAAATTTTATATACAAAAGCAGAATTGTAA
Protein
MAEFNIDELLKNVLEDPSTEISEETLKQLYQKTNPYKQFKNDSRVAFCSFTNLREQYIRRLIMTSFIGYVFKALQEWMPSYSKPTYTTKTLLSELITLVDTLKQETNDVPSESVVNTLLSIADNCKTQTQKSKEAKTTIDSFLREHFVFDPNLHAQSAYTCASTCASTCASTCASTCADTNVDTCASTCADTCADTNVDTCASTCADTCADTCVSTCVSTCADTCADTNVDTCASTCADTNVDTCVSTCADTCASTEYTDLMDPERIPLHIMQKTLNVPNELQADIDAITQTPQGYRAAAHILQNIELHQSIKHMLENPKVFKPILFNTKITRYLSQHIPPQDTFYKWNYYIEDNYEELRAATESIYPEKPDLEFAFIIYDVVDSSSNQQKIDEFYYKYKDQIFSEVSSIQLGNWTLLGSFKANRERYNYFNQNNEIIKRILDRHEEDLKIGKEILRNTIYHKKAKNIQETGPDAPGLSIYNSTFHTDSGIKGLLSFKELKNLEKASGNIKKAREYDFIDDCEEKIKQLLSKENLTPDEKSQLEKTKKQLENALEMLNVPDDTIRVDMWVNNNNKLEKEILYTKAEL

Summary

Function
Plays an essential role in the assembly of the icosahedral capsid of the virus.
Similarity
Belongs to the asfivirus B602L family.
Keywords
Complete proteome   Host cytoplasm   Repeat   Reference proteome  
Feature
chain  Protein B602L
EMBL
AM712240    CAN10429.1    KM262845    AIY22429.1    AM712239    CAN10179.1    + More
MH025919    AXB49825.1    KM111295    AJL34258.1    MH025916    MH025917    MH025918    MH025920    AXB49308.1    AXB49482.1    AXB49654.1    AXB49998.1    KT795376    KT795377    AMQ11023.1    AMQ11024.1    AY261360    U18466    KP055815    AKO62761.1    KM111294    AJL34093.1    FN557520    CBH29181.1    KM262844    AIY22271.1    MG596383    MG596391    AYE66934.1    AYE66942.1    MG596388    AYE66939.1    MG596379    MG596380    MG596384    MG596385    MG596386    MG596387    MG596389    MG596390    MG596392    MG596393    AYE66930.1    AYE66931.1    AYE66935.1    AYE66936.1    AYE66937.1    AYE66938.1    AYE66940.1    AYE66941.1    AYE66943.1    AYE66944.1    MG596381    MG596382    AYE66932.1    AYE66933.1    L00966    AY261361    KT961377    APA62539.1    KX354450    AOO54419.1    FR682468    CBW46746.1    MH744810    MG939583    MG939587    MG939588    LS478113    AXP99041.1    AXZ95854.1    AXZ96042.1    AXZ96137.1    SPS73503.1    KT795378    AMQ11025.1    AY261363    AY261366    KM102979    AJZ77057.1    KT795379    AMQ11026.1    KX552040    ARA72022.1    LT839607    SME64825.1    KJ614390    KU702948    KU702950    KU702952    AIB51866.1    AMN83099.1    AMN84080.1    AMN85068.1   
PDB
3Q5X     E-value=4.93887,     Score=71

Ontologies

KEGG

Subcellular Location

From MSLVP
Cytoplasm
From Uniprot
Host cytoplasm  

Topology

Length:
587
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.05081
Exp number, first 60 AAs:
0.00653
Total prob of N-in:
0.00264
outside
1  -  587
 
 

Population Genetic Test Statistics

Pi
0.0296313
Theta
0.0386839
Tajima's D
-0.8723237
CLR
0.235172
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
Protein
QED21663.1
AKO62761.1
China_AnhuiXCGQ_2018 Protein
Protein
QED21663.1
AYW34051.1
China_ASFV-SY18_2018 Protein
AKO62761.1
Poland_Pol16_20186_o7_2016-2017 Protein
Protein
QED21663.1
AXZ95854.1
Poland_Pol16_20538_o9_2016-2017 Protein
CAN10429.1
Poland_Pol16_20540_o10_2016-2017 Protein
Protein
CAN10429.1
QED21663.1
Poland_Pol16_29413_o23_2016-2017 Protein
Protein
CAN10429.1
QED21663.1
Poland_Pol17_03029_C201_2016-2017 Protein
Protein
QED21663.1
AXZ96042.1
Poland_Pol17_04461_C210_2016-2017 Protein
Protein
QED21663.1
AXZ96137.1
Poland_Pol17_05838_C220_2016-2017 Protein
Protein
CAN10429.1
QED21663.1
Poland_ASFV_POL_Podlaskie_2015 Protein
Protein
CAN10429.1
QED21663.1
Uganda_R8_2015 Protein
AXB49308.1
Uganda_R7_2015 Protein
AXB49482.1
Uganda_R25_2015 Protein
AXB49654.1
Uganda_N10_2015 Protein
AXB49825.1
Uganda_R35_2015 Protein
AXB49998.1
Estonia_2014 Protein
Protein
QED21663.1
SPS73503.1
Italy_26544_OG10_2010 Protein
AJZ77057.1
Italy_47_Ss_2008_2008 Protein
AOO54419.1
Portugal_OURT_88.3_1988 Protein
Protein
Protein
CAN10429.1
QED21663.1
CAN10429.1
Spain_E75_1975 Protein
Protein
QED21663.1
CBH29181.1
Russia_Georgia_2007 Protein
Protein
QED21663.1
CBW46746.1
Kenya_Tk1_2005 Protein
AJL34093.1
Kenya_Bus_2006 Protein
AJL34258.1
Russia_Odintsovo_2014 Protein
CAN10429.1
Portugal_L60_1960 Protein
Protein
QED21663.1
AIY22271.1
Portugal_NHV_1968 Protein
Protein
QED21663.1
AIY22429.1
Russia_Kashino_2013 Protein
Protein
CAN10429.1
QED21663.1
Benin_1997 Protein
CAN10179.1
South_Africa_KNP_Pretorisuskop_1996 Protein
CAN10429.1
South_Africa_MGR_Mkuzi_1979 Protein
CAN10429.1
Malawi_Lil_1983    
Kenya_1950 Protein
CAN10429.1
Namibia_Warthog_1980 Protein
CAN10429.1
South_Africa_Warmbaths_1987 Protein
CAN10429.1
Malawi_Tengani_1962 Protein
CAN10429.1
China_HLJ_2018 Protein
Protein
QED21663.1
QBH90568.1
China_LN_2018 Protein
Protein
QED21663.1
QBH90753.1
China_wbBS01_2018 Protein
Protein
QED21663.1
QDL88111.1
Ukraine_Kyiv_2014 Protein
QED21662.1
Belgium_Etalle_wb_2018 Protein
Protein
QED21663.1
QED90523.1
Lithuania_LT14_2014 Protein
Protein
QED21663.1
QEY87886.1
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983    
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