ASFVdb The African Swine Fever Virus Database
Strain
Poland_Pol16_29413_o23_2016-2017 (Region: Poland;  Strain: Pol16_29413_o23;  Date: 2016-2017)
Gene
B602L
Description
With frameshift mutation but translatable,  B602L
GenBank Accession
Full name
Protein B602L      
 

Sequence

CDS
ATGGCAGAATTTAATATTGATGAGCTTCTCAAAAACGTATTGGAGGATCCCTCTACTGAAATATCCGAAGAAACGCTTAAACAGCTTTACCAAAGGACGAACCCTTACAAACAGTTCAAAAATGATAGCAGGGTGGCCTTTTGCTCTTTTACAAATTTGCGGGAGCAGTATATTCGACGTCTTATAATGACTAGCTTTATTGGATATGTCTTCAAAGCTCTGCAGGAATGGATGCCTTCCTATTCAAAACCTACCCACACGACCAAAACTCTTCTCAGTGAGCTAATAACGTTAGTTGATACTTTGAAACAGGAAACTAATGATGTTCCCTCTGAATCGGTAGTAAATACAATTTTATCTATAGCAGATAGCTGCAAAACCCAGACGCAGAAAAGCAAGGAAGCTAAAACAACGATCGATAGCTTTTTACGAGAACATTTTGTGTTTGATCCTAATCTTCATGCTCAAAGTGCGTATACTTGTGCAGATACCAATGTAGACACTTGTGCAAGCATGTGTGCAGATACCAATGTAGACACCTGTGCAAGCATGTGTGCAGATACCAATGTAGATACCTGTGCAAGCACTTGTACAAGCACAGAATACACCGATTTAGCAGATCCTGAGCGCATCCCTTTACACATCATGCAAAAAACATTAAATGTGCCTAATGAGCTTCAGGCCGATATTGATGCAATCACCCAAACCCCACAGGGCTATAGGGCAGCAGCCCACATATTACAAAATATAGAACTTCACCAAAGCATTAAACATATGCTTGAAAATCCGAGGGCGTTTAAACCCATTCTCTTTAACACAAAAATTACTAGATATCTTTCGCAGCATATTCCACCTCAGGATACTTTTTATAAGTGGAATTATTACATTGAGGATAATTACGAAGAGTTGCGGGCCGCTACGGAAAGCATCTACCCAGAAAAACCCGACCTAGAGTTTGCCTTCATTATTTATGATGTGGTGGATAGCAGCAACCAACAAAAGGTTGATGAATTTTATTATAAATATAAAGACCAGATTTTCTCAGAGGTTTCATCCATTCAATTAGGCAACTGGACACTCCTGGGAAGCTTTAAGGCCAACAGAGAGCGCTACAATTATTTTAATCAAAATAATGAAATAATAAAACGGATTTTGGACCGTCATGAGGAAGACCTAAAGATAGGAAAAGAGATTTTACGAAATACTATTTACCACAAAAAAGCAAAAAATATACAAGAAACTGGCCCGGATGCTCCGGGGCTCTCCATCTATAATTCAACCTTTCACACGGATAGCGGGATTAAGGGACTGCTTTCCTTTAAGGAGCTA
Protein
MAEFNIDELLKNVLEDPSTEISEETLKQLYQRTNPYKQFKNDSRVAFCSFTNLREQYIRRLIMTSFIGYVFKALQEWMPSYSKPTHTTKTLLSELITLVDTLKQETNDVPSESVVNTILSIADSCKTQTQKSKEAKTTIDSFLREHFVFDPNLHAQSAYTCADTNVDTCASMCADTNVDTCASMCADTNVDTCASTCTSTEYTDLADPERIPLHIMQKTLNVPNELQADIDAITQTPQGYRAAAHILQNIELHQSIKHMLENPRAFKPILFNTKITRYLSQHIPPQDTFYKWNYYIEDNYEELRAATESIYPEKPDLEFAFIIYDVVDSSNQQKVDEFYYKYKDQIFSEVSSIQLGNWTLLGSFKANRERYNYFNQNNEIIKRILDRHEEDLKIGKEILRNTIYHKKAKNIQETGPDAPGLSIYNSTFHTDSGIKGLLSFKEL

Summary

Function
Plays an essential role in the assembly of the icosahedral capsid of the virus.
Similarity
Belongs to the asfivirus B602L family.
Keywords
Complete proteome   Host cytoplasm   Reference proteome   Repeat  
Feature
chain  Protein B602L
PDB
3Q5X     E-value=4.93887,     Score=71

Ontologies

KEGG

Subcellular Location

From MSLVP
Cytoplasm
From Uniprot
Host cytoplasm  

Topology

Length:
443
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0462
Exp number, first 60 AAs:
0.00598
Total prob of N-in:
0.00303
outside
1  -  443
 
 

Population Genetic Test Statistics

Pi
0.0292779
Theta
0.0397385
Tajima's D
-0.9942681
CLR
0.122079
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
Protein
QED21663.1
AKO62761.1
China_AnhuiXCGQ_2018 Protein
Protein
QED21663.1
AYW34051.1
China_ASFV-SY18_2018 Protein
AKO62761.1
Poland_Pol16_20186_o7_2016-2017 Protein
Protein
QED21663.1
AXZ95854.1
Poland_Pol16_20538_o9_2016-2017 Protein
CAN10429.1
Poland_Pol16_20540_o10_2016-2017 Protein
Protein
CAN10429.1
QED21663.1
Poland_Pol16_29413_o23_2016-2017 Protein
Protein
CAN10429.1
QED21663.1
Poland_Pol17_03029_C201_2016-2017 Protein
Protein
QED21663.1
AXZ96042.1
Poland_Pol17_04461_C210_2016-2017 Protein
Protein
QED21663.1
AXZ96137.1
Poland_Pol17_05838_C220_2016-2017 Protein
Protein
CAN10429.1
QED21663.1
Poland_ASFV_POL_Podlaskie_2015 Protein
Protein
CAN10429.1
QED21663.1
Uganda_R8_2015 Protein
AXB49308.1
Uganda_R7_2015 Protein
AXB49482.1
Uganda_R25_2015 Protein
AXB49654.1
Uganda_N10_2015 Protein
AXB49825.1
Uganda_R35_2015 Protein
AXB49998.1
Estonia_2014 Protein
Protein
QED21663.1
SPS73503.1
Italy_26544_OG10_2010 Protein
AJZ77057.1
Italy_47_Ss_2008_2008 Protein
AOO54419.1
Portugal_OURT_88.3_1988 Protein
Protein
Protein
CAN10429.1
QED21663.1
CAN10429.1
Spain_E75_1975 Protein
Protein
QED21663.1
CBH29181.1
Russia_Georgia_2007 Protein
Protein
QED21663.1
CBW46746.1
Kenya_Tk1_2005 Protein
AJL34093.1
Kenya_Bus_2006 Protein
AJL34258.1
Russia_Odintsovo_2014 Protein
CAN10429.1
Portugal_L60_1960 Protein
Protein
QED21663.1
AIY22271.1
Portugal_NHV_1968 Protein
Protein
QED21663.1
AIY22429.1
Russia_Kashino_2013 Protein
Protein
CAN10429.1
QED21663.1
Benin_1997 Protein
CAN10179.1
South_Africa_KNP_Pretorisuskop_1996 Protein
CAN10429.1
South_Africa_MGR_Mkuzi_1979 Protein
CAN10429.1
Malawi_Lil_1983    
Kenya_1950 Protein
CAN10429.1
Namibia_Warthog_1980 Protein
CAN10429.1
South_Africa_Warmbaths_1987 Protein
CAN10429.1
Malawi_Tengani_1962 Protein
CAN10429.1
China_HLJ_2018 Protein
Protein
QED21663.1
QBH90568.1
China_LN_2018 Protein
Protein
QED21663.1
QBH90753.1
China_wbBS01_2018 Protein
Protein
QED21663.1
QDL88111.1
Ukraine_Kyiv_2014 Protein
QED21662.1
Belgium_Etalle_wb_2018 Protein
Protein
QED21663.1
QED90523.1
Lithuania_LT14_2014 Protein
Protein
QED21663.1
QEY87886.1
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983    
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