ASFVdb The African Swine Fever Virus Database
Strain
Uganda_R7_2015 (Region: Uganda, Tororo district;  Strain: R7;  Date: 2015)
Gene
B962L
Description
With frameshift mutation but translatable,  B962L
Location
MH025917.1(-):91724-91990
GenBank Accession
QED21648.1
Full name
Putative RNA Helicase B962L       + More
Putative RNA helicase B962L      
 

Sequence

CDS
ATGCTAAAGTATTCTGCTATGGTGCAGATTTTGGCGCGGCGGGAAGATATTTTAAATGAACTGGCGGTTGTAGGATTAAACCCCTTCCACCAATGGCAAAACCGTTTGGCGTCCGCCAATGCAGAAACCTTTTTAAAACGTGTTTGTACTTTGAAACAGTGTTTTTATGAGGCGTATCGCCTTAATTGTTTCTGCTACGACGAACAAAGGCTTCTTTATACGGGAAGAAATGGAATACACTTTTCTTACCAGGATACGGTGATCAAA
Protein
MLKYSAMVQILARREDILNELAVVGLNPFHQWQNRLASANAETFLKRVCTLKQCFYEAYRLNCFCYDEQRLLYTGRNGIHFSYQDTVIK

Summary

Catalytic Activity
ATP + H2O = ADP + H(+) + phosphate
Similarity
Belongs to the DEAD box helicase family. DEAH subfamily.
Keywords
ATP-binding   Complete proteome   Helicase   Host membrane   Hydrolase   Membrane   Nucleotide-binding   Transmembrane   Transmembrane helix   Reference proteome  
Feature
chain  Putative RNA Helicase B962L
Uniprot
P0C9A2   E0WML1   A0A2X0RUB3   A0A5B8XBB4   A9JL25   D4I5R1   + More
A9JLV9   A0A0A1E087   Q89443   P0C9A3   Q8V9U2   A0A0C5B2K3   P0C9A4   A0A0C5B261   A0A2Z5DGJ6  
Pubmed
21470447    18198370    25406173    26618713    11831707    25645905    + More
EMBL
AY261363    FR682468    CBW46739.1    MG939583    MG939587    MG939588    + More
LS478113    AXZ95847.1    AXZ96035.1    AXZ96130.1    SPS73496.1    MN194591    QED21648.1    AM712239    CAN10172.1    FN557520    CBH29174.1    AM712240    CAN10422.1    KM262844    KM262845    KM102979    KP055815    KX354450    AIY22264.1    AIY22422.1    AJZ77048.1    AKO62754.1    AOO54411.1    L10062    U18466    AY261366    L00966    AY261361    KM111295    MH025916    MH025917    MH025918    MH025920    AJL34251.1    AXB49301.1    AXB49475.1    AXB49647.1    AXB49991.1    AY261360    KM111294    AJL34086.1    MH025919    AXB49818.1   
Proteomes
UP000000859    UP000141072    UP000321214    UP000130745    UP000101090    UP000108903    + More
UP000110401    UP000117635    UP000142390    UP000241813    UP000266411    UP000000624    UP000000858    UP000000860    UP000101566    UP000000861    UP000105860   
Pfam
PF00271   Helicase_C
PF00270   DEAD
Interpro
IPR027417   P-loop_NTPase
IPR011545   DEAD/DEAH_box_helicase_dom
IPR002464   DNA/RNA_helicase_DEAH_CS
IPR001650   Helicase_C
IPR014001   Helicase_ATP-bd
IPR029063   SAM-dependent_MTases
SUPFAM
SSF53335   SSF53335
SSF52540   SSF52540
ProteinModelPortal
P0C9A2   E0WML1   A0A2X0RUB3   A0A5B8XBB4   A9JL25   D4I5R1   + More
A9JLV9   A0A0A1E087   Q89443   P0C9A3   Q8V9U2   A0A0C5B2K3   P0C9A4   A0A0C5B261   A0A2Z5DGJ6  
PDB
5Y88     E-value=1.15094e-42,     Score=440

Ontologies

KEGG
vg:22220302    
GO
GO:0003676  F:nucleic acid binding
 GO:0005524  F:ATP binding
 GO:0033644  C:host cell membrane
 GO:0016021  C:integral component of membrane
 GO:0004386  F:helicase activity

Subcellular Location

From MSLVP
Single-Pass Membrane
From Uniprot
Host membrane  

Topology

Length:
89
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00082
Exp number, first 60 AAs:
0.00079
Total prob of N-in:
0.35135
outside
1  -  89
 
 

Population Genetic Test Statistics

Pi
0.0334539
Theta
0.043235
Tajima's D
-0.8055993
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AKO62754.1
China_AnhuiXCGQ_2018 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AYW34044.1
China_ASFV-SY18_2018 Protein
 AKO62754.1
Poland_Pol16_20186_o7_2016-2017 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AXZ95847.1
Poland_Pol16_20538_o9_2016-2017 Protein
Protein
Genetic Remain
 AJL34086.1
QED21648.1
QED21650.1
Poland_Pol16_20540_o10_2016-2017 Protein
Protein
Genetic Remain
 AJL34086.1
QED21648.1
QED21650.1
Poland_Pol16_29413_o23_2016-2017 Protein
Protein
Genetic Remain
 AJL34086.1
QED21648.1
QED21650.1
Poland_Pol17_03029_C201_2016-2017 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AXZ96035.1
Poland_Pol17_04461_C210_2016-2017 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AXZ96130.1
Poland_Pol17_05838_C220_2016-2017 Protein
Protein
Genetic Remain
 AJL34086.1
QED21648.1
QED21650.1
Poland_ASFV_POL_Podlaskie_2015 Protein
Protein
Genetic Remain
 AJL34086.1
QED21648.1
QED21650.1
Uganda_R8_2015 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AXB49301.1
Uganda_R7_2015 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AXB49475.1
Uganda_R25_2015 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AXB49647.1
Uganda_N10_2015 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AXB49818.1
Uganda_R35_2015 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AXB49991.1
Estonia_2014 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
SPS73496.1
Italy_26544_OG10_2010 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AJZ77048.1
Italy_47_Ss_2008_2008 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AOO54411.1
Portugal_OURT_88.3_1988 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
CAN10422.1
Spain_E75_1975 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
CBH29174.1
Russia_Georgia_2007 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
CBW46739.1
Kenya_Tk1_2005 Protein
Protein
Genetic Remain
Protein
 AJL34086.1
QED21648.1
QED21650.1
AJL34086.1
Kenya_Bus_2006 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AJL34251.1
Russia_Odintsovo_2014 Protein
Protein
Genetic Remain
 AJL34086.1
QED21648.1
QED21650.1
Portugal_L60_1960 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AIY22264.1
Portugal_NHV_1968 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
AIY22422.1
Russia_Kashino_2013 Protein
Protein
Genetic Remain
 AJL34086.1
QED21648.1
QED21650.1
Benin_1997 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
CAN10172.1
South_Africa_KNP_Pretorisuskop_1996 Protein
Protein
Genetic Remain
 AJL34086.1
QED21648.1
QED21650.1
South_Africa_MGR_Mkuzi_1979 Protein
Protein
 AJL34086.1
QED21648.1
Malawi_Lil_1983 Genetic Remain
Protein
Protein
 AJL34086.1
QED21648.1
QED21650.1
Kenya_1950 Protein
Protein
Genetic Remain
 AJL34086.1
QED21648.1
QED21650.1
Namibia_Warthog_1980 Protein
Protein
Genetic Remain
 AJL34086.1
QED21648.1
QED21650.1
South_Africa_Warmbaths_1987 Protein
Protein
Genetic Remain
 AJL34086.1
QED21648.1
QED21650.1
Malawi_Tengani_1962 Protein
Protein
Genetic Remain
 AJL34086.1
QED21648.1
QED21650.1
China_HLJ_2018 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
QBH90561.1
China_LN_2018 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
QBH90746.1
China_wbBS01_2018 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
QDL88104.1
Ukraine_Kyiv_2014 Protein
Protein
Protein
 QED21646.1
QED21647.1
QED21649.1
Belgium_Etalle_wb_2018 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
QED90516.1
Lithuania_LT14_2014 Protein
Genetic Remain
Protein
 QED21648.1
QED21650.1
QEY87879.1
South_Africa_1985 Protein
Protein
Genetic Remain
 AJL34086.1
QED21648.1
QED21650.1
South_Africa_2_2008 Protein
Protein
Genetic Remain
 AJL34086.1
QED21648.1
QED21650.1
Zambia_LIV_1983 Protein
Genetic Remain
 QED21648.1
QED21650.1
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号
In processing...
Login to ASFVdb
Email
Password
Please go to Regist if without an account.
If you have forgotten your password, you can once again Regist an account with a registed or new email.
Cancel Go
Change my password
Enter new password
Reenter new password
Cancel Go
Regist an account of ASFVdb
It is required that you provide your institutional e-mail address (with edu or org in the domain) as confirmation of your affiliation.
Enter email
Reenter email
First Name
Last Name
Institution
You can directly go to if with an account.
Cancel Regist
Registraion Success
Your password has been sent to your email.
Please check it and login later.
Welcome to use ASFVdb.
OK