ASFVdb The African Swine Fever Virus Database
Strain
Kenya_Bus_2006 (Region: Kenya;  Strain: Ken06.Bus;  Date: 2006)
Gene
BA71V-F1055L
Description
Annotated in NCBI,  similar to African swine fever virus E75 strain E75 of INSD accession FN557520
Location
KM111295.1(-):56423-59569
GenBank Accession
AJL34226.1
Full name
Putative helicase/primase complex protein      
 

Sequence

CDS
ATGCAAGAAACTTTTAAGTTTCTTCGCTGTAACTCCCAAGGAGAAGCCGTAGAAGATAAATATTCTCTCAAAACTTTGAAAAATCACTTTGTGGTGCGAGATGAATATAACAATCTTTTTAGAGTTTTTTCAAGCCGTGATGATTTTTGGGAGTGGGAGGCGGCTCAGCCCTTTGAGCAGAAGTGTTTTCATGAAGTGGTGTTTGGATTTTTGCCTCAGCGCTTAAAATTCGACATCGACTTCCCGGTAAATAAGTCATATTCTGAAGAAGATGATGATGATAATGTCTACAACATACTTGACATCATCATTAACGTCATCATGGATGTATTTTACGAGACGTATTCTTTACCTTATAACATTAACCTAACGCGTGAACAAATTTTACTAACAGATTCTGTTGGGTTAAATAAAAAACGAGAACTCAAATACTCCTTTCATATCATACTTTATACGTACTCAGTATTAAACAACAATGAGGCCAAAGCCTTTACGTCCAAAGTGTTAGAAAATCTTCCCAAACACGTTTATCCCTTTGTTGACCCCCAGGTCAACAAAAGCATTCAGAATTTTCGCATCATAGGATCTCATAAAAAAGGTAGCATGCGTGTTAAAATGTTTAACGAAGAGCTTGCAGATGTGTTTGAGACCAGTATGACCACGAAAAAGAGCGATACTCTCATAACAACCCCCTTTGAAACGACGTGTTTACCTTGTATCCTCACACATGTAAAAGAAACGACGAATTCCTGTGATTCCATCCAACAAAATGAACTTGAAGAAGTGTTAAAATTCGCAGGAGTGTTATGTAAAAATCATTGTTTTCTCCGTGTCCATAAAAATTTAGTATTGTTTAAACGTACAAGTCCAAGTTACTGTGAAATTTGTAAGCGTATGCACGATAAGGACAATACCCTAATTTTAAGAGTCGCGGGAAATAAAGTGTATCAACATTGTCGCCATGACAATAAACATAGCCTTCTCATGGGCAGCCTTTCCGGTACAACCAATTTTGTGGAAACCTATGTGGAGCAAGTGATGACAAAGAGCATAGAGGTCCATGAGTCCATTCTCTTTGAAGAACTGCCTGATACTCAAAAACACATCTATGATGAAAGTAGTATGCGAGAGTATGAACGGGTCCCCACGCTTGTTGTAAAGGCTCAAATGAAAATAGGCAAAACCATCCAACTGCGCAACTATTTGCAAAAATACTATGGTAATGATTCTATTTCAAAACAGCAAACCATACGGTTTGTGACGTTTCGACAAATCTTCTCCAAAAATATACAAACCCGGCTGCCAAATTTCACATTGTACAGCGAAGTAACTGGAGACTTGGACAGCTACGAAAGAGTCATCATTCAAGTAGAATCACTTTTCCGCCTAACCTCCACAGCTGAGCCCGTGGACCTGCTTATTTTGGATGAGGTAGAATCGATCTTTAATCAATTTAATAGCGGCCTGCACAAATACTTTGCTCCCTCTTTTGCTATTTTCATGTGGATGCTTGAAACGGCAAATTATGTTATATGCTTGGATGCAAACCTAGGAAATCGAACGTATAATATTCTACAACGTTTTCGTGGGGATGTACCTATCTTCTTTCATTGGAATCAGTACCAAAAGGCCCAGAATGACATGTATTATTTCACCTCTTCACGAGAAATTTGGTTAAATAATCTTTTAAAGGATTTGCTAGAAGACAAAAAAATTGTTATTCCTACAAATTCATTAATGGAGGCCCGTCTGTTACAATCGTTTATTCAGAAAAAGTTCCCGGAAAAAAAGATCGGGTTTTATAGTTCTAAAAGCAGTGCTCATGAACGGGAATCCCATTTTAATAACGTATCCTATTATTGGGGACTCATTGATATCCTTATCTATACGCCCACGATTTCAGCGGGTGTTTCGTATGAAGATAAGAGGTTTGATGTTTTATACGGCTTTTTTAACAATATGTCGTGTGACGTAGAAACATGTTGTCAAATGTTGGGCCGCGTGCGTGAATTAAAGAGTAAATGTTATAAAATCTGTTTACAGGGAAAACAAAATTACTTTCCGGAAACAATTGAAGACATTGAAACGTTCACATTACAAAAACGTGACACCCTCTTTCAGACGATAAATAATCACCAGCTTTCCTTCACGTATAGTAAGGAAACAGGTAGGCCGATATATTATAAAACTCCGTACTACCATTTATGGCTTGAAACAATGCGGATACAGCATTTATCAAAAAATCACTTTATAACACGATTTATTAACCAAGTCGCTGACACCGGCGCTAAGGTGTTTATATTGACGGGTGAAAAACTGGAGACGGTCAAACAGTATACAAGTATTAAAATGGAAATTAAGCACCAGGATTATGTCAACATTGCCTCGGCTGAAACTATTGATGCCAATAAAGCTTTGCAAATTAAACAAAACTTAAAGGAAGGCATCACAGTAGACCAGCAAGACATGTTCGCGTATGAAAAGTATAAACTACTCGAATTTTATGCATGGCACGGTAATAAAATTACCCCCAAATTTGTTGAACAATATAATAGTTTTATGACAAAACAGAACTACACGGGTCGTGTTCAAATAAGCCGCGGAAAAACAATACACGAATCGCTTACTATGTTACAAACTCAGGAATTAAACTTCCACCAATGGGCCATGCAACATGCAGAGCATCATGATCTGCAATTTAATTATAGCTTTCAATCCCATATGTATGCTATTATGCTGTTAACTAAGTGCGGCTTTAAATGCGTCCAGGACCCTAATATATTGACCAATGAGCAATTGATGACGAAACTCGTTAATGAATTTGTTCAGTATGATTTAAGCGCAGTTAGCTTTGAGTTTAAGCTTAAAAAGCCTAATAAAATGGATCCCCAAACAATTTTAAAATTCATTAATAAAGTGTTGGGAATACGCTATGGTCTTAAAATTCACCACAACAAGGGTAATTACTACATTAAAAATACGAAGGCGGGTAGTTTGATTCCCTTTGTGAGACAGCAGATTAAGCAGAGCCCCTGCGTTGTTTCAAACCTCTTACCCATAACAGAGACTTCCTCAATAAAGGAAGAGACTTTTCCGATAAAGGAAGAGACTTCTTCGATAAAAAAGGAGACTTTTATAGAGACATGA
Protein
MQETFKFLRCNSQGEAVEDKYSLKTLKNHFVVRDEYNNLFRVFSSRDDFWEWEAAQPFEQKCFHEVVFGFLPQRLKFDIDFPVNKSYSEEDDDDNVYNILDIIINVIMDVFYETYSLPYNINLTREQILLTDSVGLNKKRELKYSFHIILYTYSVLNNNEAKAFTSKVLENLPKHVYPFVDPQVNKSIQNFRIIGSHKKGSMRVKMFNEELADVFETSMTTKKSDTLITTPFETTCLPCILTHVKETTNSCDSIQQNELEEVLKFAGVLCKNHCFLRVHKNLVLFKRTSPSYCEICKRMHDKDNTLILRVAGNKVYQHCRHDNKHSLLMGSLSGTTNFVETYVEQVMTKSIEVHESILFEELPDTQKHIYDESSMREYERVPTLVVKAQMKIGKTIQLRNYLQKYYGNDSISKQQTIRFVTFRQIFSKNIQTRLPNFTLYSEVTGDLDSYERVIIQVESLFRLTSTAEPVDLLILDEVESIFNQFNSGLHKYFAPSFAIFMWMLETANYVICLDANLGNRTYNILQRFRGDVPIFFHWNQYQKAQNDMYYFTSSREIWLNNLLKDLLEDKKIVIPTNSLMEARLLQSFIQKKFPEKKIGFYSSKSSAHERESHFNNVSYYWGLIDILIYTPTISAGVSYEDKRFDVLYGFFNNMSCDVETCCQMLGRVRELKSKCYKICLQGKQNYFPETIEDIETFTLQKRDTLFQTINNHQLSFTYSKETGRPIYYKTPYYHLWLETMRIQHLSKNHFITRFINQVADTGAKVFILTGEKLETVKQYTSIKMEIKHQDYVNIASAETIDANKALQIKQNLKEGITVDQQDMFAYEKYKLLEFYAWHGNKITPKFVEQYNSFMTKQNYTGRVQISRGKTIHESLTMLQTQELNFHQWAMQHAEHHDLQFNYSFQSHMYAIMLLTKCGFKCVQDPNILTNEQLMTKLVNEFVQYDLSAVSFEFKLKKPNKMDPQTILKFINKVLGIRYGLKIHHNKGNYYIKNTKAGSLIPFVRQQIKQSPCVVSNLLPITETSSIKEETFPIKEETSSIKKETFIET

Summary

Similarity
Belongs to the asfivirus F1055L family.
Keywords
Complete proteome   DNA replication   Reference proteome  
Feature
chain  Putative helicase/primase complex protein
Uniprot
A0A2Z5DG80   A0A0C5B2H4   A0A2Z5DGU9   E0WMI5   A0A2X0TC64   P0CA09   + More
P0CA11   A9JLQ2   A0A0A1DY25   D4I5N5   A9JKZ1   A0A0A1E0K1   Q65146   A0A0C5B242   P0CA10   Q07183   P0CA12   A0A2I1FI63   A0A2N0NUE0   A0A2H5T217   A0A2H5T205   A0A2I1FMX9   A0A2H5T1Z9   U9T1Z0   A0A1X6WGC5  
Pubmed
25645905    21470447    18198370    25406173    26618713    11831707    + More
8389041    24277808    30271968    29355972   
EMBL
MH025919    AXB49793.1    KM111295    AJL34226.1    MH025916    MH025917    + More
MH025918    MH025920    AXB49276.1    AXB49450.1    AXB49622.1    AXB49966.1    FR682468    CBW46713.1    MG939583    MG939587    MG939588    LS478113    AXZ95823.1    AXZ96011.1    AXZ96106.1    SPS73470.1    AY261366    AY261363    AM712240    CAN10395.1    KM262845    AIY22397.1    FN557520    CBH29148.1    AM712239    CAN10146.1    KM262844    KM102979    KP055815    KX354450    AIY22238.1    AJZ77046.1    AKO62729.1    AOO54378.1    U18466    KM111294    AJL34061.1    AY261360    L12174    AAA42719.1    AY261361    LLXK01003487    PKY34037.1    LLXJ01002756    PKB98192.1    BDIQ01000116    GBC36600.1    GBC36599.1    LLXK01005735    PKY35736.1    AUPC02000196    GBC36598.1    POG66223.1    KI295911    BDIQ01000097    AUPC02000234    ESA02165.1    GBC31988.1    POG64660.1    LT706986    SIP85807.1   
Proteomes
UP000101566    UP000141072    UP000000858    UP000000859    UP000108903    UP000110401    + More
UP000101090    UP000130745    UP000117635    UP000142390    UP000241813    UP000266411    UP000000624    UP000105860    UP000000861    UP000000860    UP000232722    UP000236242    UP000018888    UP000201921   
PRIDE
P0CA09    P0CA11    Q65146    P0CA10    P0CA12   
Pfam
PF02399   Herpes_ori_bp
Interpro
IPR027417   P-loop_NTPase
IPR003450   Replication_origin-bd
SUPFAM
SSF52540   SSF52540
ProteinModelPortal
A0A2Z5DG80   A0A0C5B2H4   A0A2Z5DGU9   E0WMI5   A0A2X0TC64   P0CA09   + More
P0CA11   A9JLQ2   A0A0A1DY25   D4I5N5   A9JKZ1   A0A0A1E0K1   Q65146   A0A0C5B242   P0CA10   Q07183   P0CA12   A0A2I1FI63   A0A2N0NUE0   A0A2H5T217   A0A2H5T205   A0A2I1FMX9   A0A2H5T1Z9   U9T1Z0   A0A1X6WGC5  
PDB
5A9J     E-value=1.87827,     Score=77

Ontologies

KEGG
vg:22220429    
GO
GO:0006260  P:DNA replication
 GO:0003688  F:DNA replication origin binding
 GO:0005524  F:ATP binding
 GO:0004386  F:helicase activity

Subcellular Location

From MSLVP
Capsid

Topology

Length:
1048
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
2.67350000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00209
outside
1  -  1048
 
 

Population Genetic Test Statistics

Pi
0.0395598
Theta
0.0500616
Tajima's D
-0.65561
CLR
0.109013
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
 AKO62729.1
China_AnhuiXCGQ_2018 Protein
 AYW34019.1
China_ASFV-SY18_2018 Protein
 AKO62729.1
Poland_Pol16_20186_o7_2016-2017 Protein
 AXZ95823.1
Poland_Pol16_20538_o9_2016-2017 Protein
 AJL34061.1
Poland_Pol16_20540_o10_2016-2017 Protein
 AJL34061.1
Poland_Pol16_29413_o23_2016-2017 Protein
 AJL34061.1
Poland_Pol17_03029_C201_2016-2017 Protein
 AXZ96011.1
Poland_Pol17_04461_C210_2016-2017 Protein
 AXZ96106.1
Poland_Pol17_05838_C220_2016-2017 Protein
 AJL34061.1
Poland_ASFV_POL_Podlaskie_2015 Protein
 AJL34061.1
Uganda_R8_2015 Protein
 AXB49276.1
Uganda_R7_2015 Protein
 AXB49450.1
Uganda_R25_2015 Protein
 AXB49622.1
Uganda_N10_2015 Protein
 AXB49793.1
Uganda_R35_2015 Protein
 AXB49966.1
Estonia_2014 Protein
 SPS73470.1
Italy_26544_OG10_2010 Protein
 AJZ77046.1
Italy_47_Ss_2008_2008 Protein
 AOO54378.1
Portugal_OURT_88.3_1988 Protein
 CAN10395.1
Spain_E75_1975 Protein
 CBH29148.1
Russia_Georgia_2007 Protein
 CBW46713.1
Kenya_Tk1_2005 Protein
Protein
 AJL34061.1
AJL34061.1
Kenya_Bus_2006 Protein
 AJL34226.1
Russia_Odintsovo_2014 Protein
 AJL34061.1
Portugal_L60_1960 Protein
 AIY22238.1
Portugal_NHV_1968 Protein
 AIY22397.1
Russia_Kashino_2013 Protein
 AJL34061.1
Benin_1997 Protein
 CAN10146.1
South_Africa_KNP_Pretorisuskop_1996 Protein
 AJL34061.1
South_Africa_MGR_Mkuzi_1979 Protein
 AJL34061.1
Malawi_Lil_1983 Protein
 AJL34061.1
Kenya_1950 Protein
 AJL34061.1
Namibia_Warthog_1980 Protein
 AJL34061.1
South_Africa_Warmbaths_1987 Protein
 AJL34061.1
Malawi_Tengani_1962 Protein
 AJL34061.1
China_HLJ_2018 Protein
 QBH90535.1
China_LN_2018 Protein
 QBH90720.1
China_wbBS01_2018 Protein
 QDL88078.1
Ukraine_Kyiv_2014 Protein
Protein
 QED21604.1
QED21605.1
Belgium_Etalle_wb_2018 Protein
 QED90490.1
Lithuania_LT14_2014 Protein
 QEY87853.1
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983    
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