ASFVdb The African Swine Fever Virus Database
Strain
Kenya_Bus_2006 (Region: Kenya;  Strain: Ken06.Bus;  Date: 2006)
Gene
BA71V-A240L
Description
Annotated in NCBI,  similar to African swine fever virus E75 strain E75 of INSD accession FN557520
GenBank Accession
Full name
Thymidylate kinase       + More
Truncated thymidylate kinase      
Alternative Name
dTMP kinase
 

Sequence

CDS
ATGCCATCAGAAGAATTGCACGGATTATTCACAAAACATCGATGTGAATTTACGGCAGAAATTGCAGCACTACTTAAACTAAATTTTATTGTAATTGTGGACCGTTATATTTGGTCTGGTTTGGCATATGCTCAAGCAGACAGAATAATGATTGATACCAAAAATACTTTCAATCCGGATTACACATTCTTTTTATCTTCAAACAAACCATTAAATGAAAAACCCTTACATTTACAACGATTGTATGAAACAGAAGAAAAACAAGAAATAATTTTTACTCAATTTATTAATATCATAAATGAAGTACCTAAAAATAAGTTTTGTATTATTCCTGCAAATCTTAATAAGGAAATAATTGATAAGATCATTTTCTCAAAAACGATAAAAGTTTTTGAGAAAAACTTAAATTTAGACTATATTAAAATGTATGATGGTATGTATTTTAATATTCACGACTTAGATTTAATCCGTTTTGATTGGCAAAAATGTATTGAAGAAGATGATGGCATAGATGAGGAACACGGATTATAA
Protein
MPSEELHGLFTKHRCEFTAEIAALLKLNFIVIVDRYIWSGLAYAQADRIMIDTKNTFNPDYTFFLSSNKPLNEKPLHLQRLYETEEKQEIIFTQFINIINEVPKNKFCIIPANLNKEIIDKIIFSKTIKVFEKNLNLDYIKMYDGMYFNIHDLDLIRFDWQKCIEEDDGIDEEHGL

Summary

Catalytic Activity
ATP + dTMP = ADP + dTDP
Similarity
Belongs to the thymidylate kinase family.
Keywords
ATP-binding   Complete proteome   Kinase   Nucleotide biosynthesis   Nucleotide-binding   Transferase   Reference proteome  
Feature
chain  Thymidylate kinase
EMBL
KM111295    AJL34215.1    MH025916    MH025917    MH025918    MH025919    + More
MH025920    AXB49264.1    AXB49438.1    AXB49610.1    AXB49781.1    AXB49954.1    KM111294    AJL34050.1    AY261360    AY261366    FR682468    CBW46701.1    MG939583    MG939587    MG939588    LS478113    AXZ95812.1    AXZ96000.1    AXZ96095.1    SPS73458.1    KP055815    AKO62717.1    AY261363    AY261361    AM712239    CAN10134.1    FN557520    CBH29136.1    AM712240    CAN10383.1    KM262844    KM262845    KM102979    KX354450    AIY22226.1    AIY22385.1    AJZ77121.1    AOO54362.1    Z19544    U18466    AP012217    BAO40880.1    HE580270    CCD24456.1    FN392321    CAY70299.1    FR839630    CCA39907.1    LT598472    SCU86869.1    HE612861    CCE63831.1    CCAG010022297    CP014584    ANZ74196.1    GAMC01004884    JAC01672.1    UFAJ01000041    SSD58725.1    CU928167    CAR21909.1    KV454483    ODV60045.1    DS480420    EDO16637.1    KV454426    ODQ82731.1    LS990928    VAX57769.1    CR380954    CAG59814.1    CP014246    AMD21587.1    LLZZ01000149    KTA99005.1    LT635768    SGZ56927.1    LT635761    SGZ57480.1    LT598456    SCU79705.1    BDGX01000026    GAV50762.1    CU928179    CAR29263.1    HE616747    CCE92867.1    CP019494    AQZ12716.1    HG316455    CDF88667.1    FUGC01000001    SJM82510.1    AGBW02013517    OWR43287.1    HE806324    CCH62687.1    BDGX01000048    GAV55553.1    NETL01000028    OTN64207.1    AM910996    CWHQ02000019    CWHR02000022    CAQ42467.1    SBO26419.1    SBO28983.1    GL996527    EGV62384.1    OUUW01000001    SPP73583.1    PKFO01000010    PVH23158.1    HE576758    CCC71226.1    CP001669    AFZ79185.1    LN736366    CEP63172.1    LT598482    SCU86109.1    DS989737    EEA08145.1    CP019501    AQZ16953.1   
Pfam
PF02223   Thymidylate_kin
Interpro
IPR018095   Thymidylate_kin_CS
IPR039430   Thymidylate_kin_like_dom
IPR027417   P-loop_NTPase
IPR018094   Thymidylate_kinase
SUPFAM
SSF52540   SSF52540
PDB
1E9F     E-value=3.06859e-12,     Score=171

Ontologies

KEGG

Subcellular Location

From MSLVP
Single-Pass Membrane

Topology

Length:
176
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.56404
Exp number, first 60 AAs:
0.56404
Total prob of N-in:
0.02103
outside
1  -  176
 
 

Population Genetic Test Statistics

Pi
0.0817611
Theta
0.0955721
Tajima's D
-0.5758097
CLR
0.355853
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62717.1
China_AnhuiXCGQ_2018 Protein
AYW34007.1
China_ASFV-SY18_2018 Protein
AKO62717.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95812.1
Poland_Pol16_20538_o9_2016-2017 Genetic Remain
CAN10134.1
Poland_Pol16_20540_o10_2016-2017 Genetic Remain
CAN10134.1
Poland_Pol16_29413_o23_2016-2017 Genetic Remain
CAN10134.1
Poland_Pol17_03029_C201_2016-2017 Protein
AXZ96000.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96095.1
Poland_Pol17_05838_C220_2016-2017 Genetic Remain
CAN10134.1
Poland_ASFV_POL_Podlaskie_2015 Genetic Remain
CAN10134.1
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014 Protein
SPS73458.1
Italy_26544_OG10_2010 Protein
AJZ77121.1
Italy_47_Ss_2008_2008 Protein
AOO54362.1
Portugal_OURT_88.3_1988 Protein
CAN10383.1
Spain_E75_1975 Protein
CBH29136.1
Russia_Georgia_2007 Protein
CBW46701.1
Kenya_Tk1_2005    
Kenya_Bus_2006 Protein
AJL34215.1
Russia_Odintsovo_2014 Genetic Remain
CAN10134.1
Portugal_L60_1960 Protein
AIY22226.1
Portugal_NHV_1968 Protein
AIY22385.1
Russia_Kashino_2013 Genetic Remain
CAN10134.1
Benin_1997 Protein
Protein
CAN10134.1
CAN10134.1
South_Africa_KNP_Pretorisuskop_1996 Genetic Remain
CAN10134.1
South_Africa_MGR_Mkuzi_1979 Protein
CAN10134.1
Malawi_Lil_1983 Protein
CAN10134.1
Kenya_1950    
Namibia_Warthog_1980 Genetic Remain
CAN10134.1
South_Africa_Warmbaths_1987 Protein
CAN10134.1
Malawi_Tengani_1962 Protein
CAN10134.1
China_HLJ_2018 Protein
QBH90523.1
China_LN_2018 Protein
QBH90708.1
China_wbBS01_2018 Protein
QDL88066.1
Ukraine_Kyiv_2014 Protein
QED21592.1
Belgium_Etalle_wb_2018 Protein
QED90478.1
Lithuania_LT14_2014 Protein
QEY87841.1
South_Africa_1985 Genetic Remain
CAN10134.1
South_Africa_2_2008 Protein
CAN10134.1
Zambia_LIV_1983 Genetic Remain
CAN10134.1
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