Strain
South_Africa_1985
(Region: South Africa; Strain: SPEC_57; Date: 1985)
Gene
pDP63R
Description
Annotated in NCBI,
DP63R
Location
GenBank Accession
Sequence
CDS
ATGCCTTTACAGAGGCAGGGGCGCTTGCTGGGAAAAAAAATACAAGAGTGTTACAGTACATATTACGTCTTAATATCTTTATGCGAGAGTTGTTTCCCCCCTGTACAGATCCTGTTCCTTATCAAATCCAAATTCTGTTACAAAACTACATTCTACAAAATGTCTCAACTGTTTTTACATATTATTGCCAGTAGTCATTGTTTATATCAGAATATAACCCATTTGTTTATCTTTTTTTGTGGGGCGGCCATTAAAGTCCAACGCAAAAAAAAAGATTATTCTTTTATCAGATACTTACAACGTTCTATATGTGTGTCTATGCGATGGATCATATTTTGTTGTTCATACTACGAAGCAAGCTTTTTGGCGAAAACGACGGAGTTACAGAATTTATCCCGCTCATGTTTGGATACGACTTTTATCAGCGAGCCAAAACAGTATTTACAAATTTGGCAATATTTTTTTTGCGATGCAATATACAAACACTTGTTCAGTGCCCGCTTCACTTTCTGTTCAGACATATTTGCCGCATATCAGGTCTTTTTATACTTACTATTATATTTATGTTCCGCAAGCACCATTATCAAGGGAACGATGGGAAGCTGCCTTTCTTGGTGCAATTTACGTATATATTCGATGGCCACCGCTTGGATGTCTGTGTATTTTACTATGTTACAAATGTTACCTTTCATGGTTGTACAAATATACATACGGTTTTCTTTTTCTGTATACAGTTTGCAAAGCTTATACTTGCGTGCAACGATGGCCATTTTTATCACAAGATGGTATACTGTATCTTTACGTACAAATGTCTTGCAAGCCGCGATGTTGTTGTTGTTGTCTCCATGTACGGCGATACAAACTATTGTTTCCATTTTATATGTTTTTATCTGCATTATTACAGGAATACAGTCAATGTTATTATATTTATTATTACTGTATTACACCGAATCAACGACAGTCATCTGCGAATCAAGCTGTCTTATTACTATATTTATCGTTTTTTTGGAGGCATGTCCTTTGTTCGCGGCACTATGTGCACACAGTATACCAAAATTGTTATATATATTTTGTTTTACGAGAAGGAGTATTATTTTCCTTCGGTTATACTACGCAGCATCTGTGTTGTTTATTTGCCGATATATGTTACAATGCGTTATCAGCTTTTTACAAAAACGGAAGTATTTTTTTTGGATCGCTGTTTGCATCATCGAAATATTGCGATATTCAGGGTATATATTGGGTACGTCACATGCTACCTCTATCAAAGAATACTCGCCCAATCTACAGGCTGTGTTGCAAAGCGTACTATCATCATACGTATCGAGTACCCCCGCTGTTACAAACCAAGCGATACGATGTATGTGCCGTTCCTTGCAAGCTATCGCAAATACGGAGTTTCCTATGGAATGTCGAATATTGTACTCCCTATTTTTTTCCAAAATGTTTGGAAAATTGTATACCGTCGCAGCATACAGTACACACTCCATTCTGGCGTTATATTTTTTACTTTTACATATGTATACGTGGAAGAACTCGAATATTTCTTGCGAACTTGTTATATGCATATTATGGTGTTATTTTGGTGTACTTATATGTTATGCGAAAATGCATTCTATTACATCTTTTCGGTTATGCTTTACCGCCTGTGCTATGGCATATTCAGGCTCGACCCATACGACTACTGTTTTTATATTTGTGTTATTCGCCTGCTTTGCCAGGGCATACTTTACGACGCTCCGGTTGGAAAAAATTTTGTTATGCAGATGGACAACAGTGTCCATTTTTATGTTGGGACCATTCCAGTATACTCCTATATGCTGTACCAGATCTTTTGTTACTTGTGCAGCGTTCTCGGGAGTCATATATATATGTTGCAGGGCTTTTTTCTGTATGGAGAACATTTCGTCGTAA
Protein
MPLQRQGRLLGKKIQECYSTYYVLISLCESCFPPVQILFLIKSKFCYKTTFYKMSQLFLHIIASSHCLYQNITHLFIFFCGAAIKVQRKKKDYSFIRYLQRSICVSMRWIIFCCSYYEASFLAKTTELQNLSRSCLDTTFISEPKQYLQIWQYFFCDAIYKHLFSARFTFCSDIFAAYQVFLYLLLYLCSASTIIKGTMGSCLSWCNLRIYSMATAWMSVYFTMLQMLPFMVVQIYIRFSFSVYSLQSLYLRATMAIFITRWYTVSLRTNVLQAAMLLLLSPCTAIQTIVSILYVFICIITGIQSMLLYLLLLYYTESTTVICESSCLITIFIVFLEACPLFAALCAHSIPKLLYIFCFTRRSIIFLRLYYAASVLFICRYMLQCVISFLQKRKYFFWIAVCIIEILRYSGYILGTSHATSIKEYSPNLQAVLQSVLSSYVSSTPAVTNQAIRCMCRSLQAIANTEFPMECRILYSLFFSKMFGKLYTVAAYSTHSILALYFLLLHMYTWKNSNISCELVICILWCYFGVLICYAKMHSITSFRLCFTACAMAYSGSTHTTTVFIFVLFACFARAYFTTLRLEKILLCRWTTVSIFMLGPFQYTPICCTRSFVTCAAFSGVIYICCRAFFCMENISSX
Summary
Uniprot
ProteinModelPortal
PDB
6MHX
E-value=1.7701,
Score=74
Ontologies
Subcellular Location
From MSLVP
Single-Pass Membrane
Topology
Length:
638
Number of predicted TMHs:
14
Exp number of AAs in TMHs:
317.07987
Exp number, first 60 AAs:
22.14855
Total prob of N-in:
0.97415
POSSIBLE N-term signal
sequence
Length:
637
Number of predicted TMHs:
14
Exp number of AAs in TMHs:
317.20625
Exp number, first 60 AAs:
22.14857
Total prob of N-in:
0.97415
POSSIBLE N-term signal
sequence
inside
1 - 18
TMhelix
19 - 41
outside
42 - 60
TMhelix
61 - 83
inside
84 - 173
TMhelix
174 - 195
outside
196 - 214
TMhelix
215 - 237
inside
238 - 257
TMhelix
258 - 280
outside
281 - 289
TMhelix
290 - 312
inside
313 - 324
TMhelix
325 - 344
outside
345 - 363
TMhelix
364 - 383
inside
384 - 394
TMhelix
395 - 417
outside
418 - 486
TMhelix
487 - 506
inside
507 - 518
TMhelix
519 - 541
outside
542 - 555
TMhelix
556 - 578
inside
579 - 584
TMhelix
585 - 604
outside
605 - 608
TMhelix
609 - 631
inside
632 - 638
inside
1 - 18
TMhelix
19 - 41
outside
42 - 60
TMhelix
61 - 83
inside
84 - 173
TMhelix
174 - 195
outside
196 - 214
TMhelix
215 - 237
inside
238 - 257
TMhelix
258 - 280
outside
281 - 289
TMhelix
290 - 312
inside
313 - 324
TMhelix
325 - 344
outside
345 - 363
TMhelix
364 - 383
inside
384 - 394
TMhelix
395 - 417
outside
418 - 486
TMhelix
487 - 506
inside
507 - 518
TMhelix
519 - 541
outside
542 - 555
TMhelix
556 - 578
inside
579 - 584
TMhelix
585 - 604
outside
605 - 608
TMhelix
609 - 631
inside
632 - 637
Population Genetic Test Statistics
Pi
0.0520378
Theta
0.0586784
Tajima's D
-0.6948759
CLR
0
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 | |||
| China_ASFV-SY18_2018 | |||
| Poland_Pol16_20186_o7_2016-2017 | |||
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 | |||
| Poland_Pol17_03029_C201_2016-2017 | |||
| Poland_Pol17_04461_C210_2016-2017 | |||
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 | |||
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 | |||
| Portugal_OURT_88.3_1988 | |||
| Spain_E75_1975 | |||
| Russia_Georgia_2007 | |||
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 | |||
| Russia_Kashino_2013 | |||
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 | |||
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 | |||
| China_LN_2018 | |||
| China_wbBS01_2018 | |||
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 | |||
| Lithuania_LT14_2014 | |||
| South_Africa_1985 |
Protein Protein |
QGM12950.1 QGM12950.1 |
|
| South_Africa_2_2008 |
Protein |
QGM12950.1 |
|
| Zambia_LIV_1983 |
Protein |
QGM12775.1 |
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mg@cau.edu.cn
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