ASFVdb The African Swine Fever Virus Database
Strain
Zambia_LIV_1983 (Region: Zambia;  Strain: LIV_5_40;  Date: 1983)
Gene
pDP63R
Description
Annotated in NCBI,  DP63R
GenBank Accession
 

Sequence

CDS
ATGCCTTTACAGAGGCAGGGGCGCTTGCTGGGAAAAAAAATACAAGAGTGTTACAGCACATATTACGTCTTAATATCTTTATGCGAGAGTTGTTTCCCCCCTGTATACATCCTGTTCCTTATCAAATCCAAATTCTGTTACAAAACTACATTCTACAAAATGTCTCAACTGTTTTTACTTATTATTGCCAGTAGCCATTGTTTATATCAGAATATAACCCATTTGTTTATCTTTTTTTGTGGGCGACCATTAAAGTCCGACGCAAAAAAAGATTATTCTTTTATCAGATACCTACAACGTTCTATATGGGAGTCTATGTGTTGGATCATATTTTGTTGGTCATACTACGAAGCAAGCTTTTTGGCGAAAACGACGGAGTTACAGAATTTATCCCGCTCATGTTTGGATACAACTTTTATCAGCGAGCCAAAACAGTATTTACAAATTTGGCAATACTTTTTTTGGGATGCAATATACAAACACTTGTTCAGTGCCCGCTTCACTTTCTGTTCAGACATGTTTGCCGCATATCAGGCCTTTTTATACTTACTATTATATTTATGTTCCGCAAGCACCATTATCAAGGGAACGATGGGAAGCTGCTTTTCTCGGTGCAATTCACGCAAATATTCGATGGCCACCGCTTGGACGACTGTGTATTTTACTATGTTACAAATGTTACCTTTTATGGTTGTACAAATATACATACGATTTTCTTTTTCTGTATACAGTTTGCAAAGCTTATACTTGCGTGCAACGATGGCCATTTTTATCACAAGATGGTATACTGTATCTTTACGTACAAATGCCTTGCAAGCCGCGATGTTGTCGATGTTGTCTCCATGTACGGCGATACAAACTATTGTTTCCATTTTATATGTTTTTATCTGCATTATTACAGGAATACAGTCAATGTTATTATATTTATTATTACTGTATTACACCGAATCAATGTCAGTCATCTGTGTATCAAGCTGTCTTATTACTATATTTATCGTTTTTTTGGAGGCATGTCCTTTGTTTGCGGCACTACGTGCACACAGTATACCAAAATTGTTATATATATTTTGTTTTACGAGAAGGAGTATTATTTTCCTTCGGTTATACTACGCAGCATCTGTGTTGTTTATTTGCCGATATATGTTACAATGCGTTATCAGCTTTTTACAAAAACGGAAGTATTTTTTTTGGATCGCTGTTTGCATCATCGAAATATTGCGATATTCAGGGTATATATTGGGTACGTCACATGCTACCTCTATCAAAGAATACTCGCCCAAACTACAGGCTGTGTTGCAAAGCGTACTATCATCATACGTATCGAGTACCCCCGCTGTTACAAACCAAGCGATACGATGTATGTGCCGTTCCTTGCAAGCTATCGCAAATACGGAGTTTCCTATGGAATGTCGAATATTGTACTCCCTATTTTTTTCCAAAATGTTTGGAAAATTGTATACCGTTGCGGCATACAGGAGACACTCCATTCTGGCGTTATATTTTTTACTTTTACATATGTATACGTGGAAGAACTCGAATATTTCTTGTGTACTTGTTATATGCATATTATGGTGTTATTTTGGTGTCGTTATATGGTATGCGAAAATGCATTCTATTACATCTTTTCGGTTATGCTTTACTGCCTGCGCTATGGCATATTCAGGCTCGACCCATACTACTACTGTTTTTATATTTGTGTTATTCGCCTGCTTTGCCAGGGCATACTTTACGACGCTCCGGTTGGAAAAAATTTTGTTATGCAGATGGACAACAGTGTCCATTTTTATGTCGGGACCATTCCAGTATACTCCTATATGCTGTACCAGATCTTTTGTTACTTCTGTGGCATTCTCGGGAGTCATATATATATGTTGCAGAGCTTTTTTCTGTACGGAGAACATTTCGTCGTAA
Protein
MPLQRQGRLLGKKIQECYSTYYVLISLCESCFPPVYILFLIKSKFCYKTTFYKMSQLFLLIIASSHCLYQNITHLFIFFCGRPLKSDAKKDYSFIRYLQRSIWESMCWIIFCWSYYEASFLAKTTELQNLSRSCLDTTFISEPKQYLQIWQYFFWDAIYKHLFSARFTFCSDMFAAYQAFLYLLLYLCSASTIIKGTMGSCFSRCNSRKYSMATAWTTVYFTMLQMLPFMVVQIYIRFSFSVYSLQSLYLRATMAIFITRWYTVSLRTNALQAAMLSMLSPCTAIQTIVSILYVFICIITGIQSMLLYLLLLYYTESMSVICVSSCLITIFIVFLEACPLFAALRAHSIPKLLYIFCFTRRSIIFLRLYYAASVLFICRYMLQCVISFLQKRKYFFWIAVCIIEILRYSGYILGTSHATSIKEYSPKLQAVLQSVLSSYVSSTPAVTNQAIRCMCRSLQAIANTEFPMECRILYSLFFSKMFGKLYTVAAYRRHSILALYFLLLHMYTWKNSNISCVLVICILWCYFGVVIWYAKMHSITSFRLCFTACAMAYSGSTHTTTVFIFVLFACFARAYFTTLRLEKILLCRWTTVSIFMSGPFQYTPICCTRSFVTSVAFSGVIYICCRAFFCTENISS

Summary

Uniprot
ProteinModelPortal
PDB
6MHX     E-value=1.7701,     Score=74

Ontologies

Subcellular Location

From MSLVP
Single-Pass Membrane

Topology

Length:
636
Number of predicted TMHs:
14
Exp number of AAs in TMHs:
301.29152
Exp number, first 60 AAs:
25.24411
Total prob of N-in:
0.96335
POSSIBLE N-term signal
sequence
inside
1  -  20
TMhelix
21  -  43
outside
44  -  57
TMhelix
58  -  80
inside
81  -  173
TMhelix
174  -  193
outside
194  -  212
TMhelix
213  -  235
inside
236  -  246
TMhelix
247  -  264
outside
265  -  283
TMhelix
284  -  314
inside
315  -  320
TMhelix
321  -  343
outside
344  -  362
TMhelix
363  -  382
inside
383  -  393
TMhelix
394  -  416
outside
417  -  471
TMhelix
472  -  491
inside
492  -  511
TMhelix
512  -  534
outside
535  -  548
TMhelix
549  -  571
inside
572  -  583
TMhelix
584  -  606
outside
607  -  610
TMhelix
611  -  630
inside
631  -  636
 
 

Population Genetic Test Statistics

Pi
0.0508317
Theta
0.0591637
Tajima's D
-0.6653029
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014    
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985 Protein
Protein
QGM12950.1
QGM12950.1
South_Africa_2_2008 Protein
QGM12950.1
Zambia_LIV_1983 Protein
QGM12775.1
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