ASFVdb The African Swine Fever Virus Database
Strain
South_Africa_2_2008 (Region: South Africa;  Strain: RSA_2_2008;  Date: 2008)
Gene
pEP153R
Description
Annotated in NCBI,  EP153R
GenBank Accession
Full name
Lectin-like protein EP153R       + More
 

Sequence

CDS
ATGTATTTTACGAAAAAGTACATCGGTCTTATTGTTACGAACTGTGCAAAAAAAATATTACATGTTTGTACTACAATACAAATTTGTTACATATTATTTGGAATATTGTTTGGAACTATTATGTTATCTCTTATTTATATTTTCATATTTTGGGAGAATTATATACAATGTTACCGAAATATTGTTACAATGTTTTACTGTCCTATTGTTTGGGTTGGATATATTATTGTTTGTTACTATTTTACTATTGGTACTTTTTCTACAAATTATACAGCTGCTACTATTTCTTGTATACAATTATATACTACACTTGCTATTATTGTTACTATTTTATTATATCTATCTACAATATATATTATTCAATCTATGTATTGGGTTATCAATTCTATATTATGTCAATATATATTACAACATATGTATTACTATATTTGGACAAAAAAATTATTTACACAGTACAACTATTACAATCTGTTGTTTCCCCAACTATTACATATATTTGTACTATTTCTTTATTATCATGTACAAATATTATTGGGACAAATGTTATTATATATTTATTTATTATTATTACAATTGTTATTATTACTATTGGAGATATCCTTATTTATTATTGGAATGGTATTATTATTTTTACAGCTACATGTATGTTTATTATTACAATTACTTCATTGTATGCAACAGAAAATATATATTGTACTTATCCAATATTACATTCATATCAAAATTATTTTACAATATTTATACATTATTTTATATCATATTTTTTATTGTGTGTGGATTATTATTACGTATTTTTATTTCAATCATATCTGTATTGTCTATACGAAGAAAAAGAAAAACCCATGCAGAAATACAAAGTCCACCACCATCTGTATCTATTGCAGAAGACATTTCTCATCATGTCACCACTTCCATACATGTACCATCTCCCAGAGAGCCATTACTTCCTATACCATATACTCGTTATCAGTATATTACACCTATTTACTACATGCGTCCCTCAACACAACCACTCAATCCATTTCCCCTACCTATACCGTGTCCTCCACCTATACCGTGCCCGCCACCCAAACCATGCCCGCCACCTATACCATGTCCTCCACCTATACCGTGCCCGCCACCCAAACCATGCCCGCCACCTATACCATGTCCTCCACCTATACCATGTTCTTCACCTGTATCATATTCTCCACCCAAACCACTACCTACTATCCCGCTGCTACCCAATATCCCGCCATTATCTACACAAAATATTTCGCTTATTCATGTACATACAATTATTTAATCTTTCAAGCTGGTCTTCATTTAAATTTAAAATCCACTAATAAAAAATGTATTTTCTACTACCAGATCATCGAGAACATCATGTGTTTCCTTTTCTTACAACCGATTTTCATCACATGCATCAAAATCCTATACAAAAAAATCAAGCTCCCCTACAAATCAAGCAGCTTTTTACCGGAGATTATCTCATCTGCAAAAGCCCTTCCACGATTCTGGCCTGTATTGTACGAAAAACCTACAAAGACTTTGCGGCTTCTTTGCAAGATGGACGTTATACAAATCGCCAAAAAATGCTATCGCTGCGAGAACAAACCAACTGTCAACTTTATTTTTTTGTACAAGGCCCGGCATTTCCTAACCCTCAAAAAAAAATTATTCACATTGCCTATGCAAGCATTATTACTGCTATGTCGCATCTTATGGTTACAGATCATATGTTTGTCATTCAAACGAAAAATGTGGCCCACAGTTCCCAAAAGCTTGTGCAGCTTTTTTATGCCTTTTCTATGGAAATGGTGTGCGTCGTTCCCACCTCCCTCACCCCCACGGATGCAGAGCTATGCACCAAGCTATGGTCTTCTCTTTCTGGTATTTCAGGCGTGTTACGTACAATCTTGGCAAACACTTGTTCCGTACCTCATTTGGTTACTGGAAAGCTTTCATCGCAGAATATTGTTCAGTTACAAACCCCCTCCAACCGGCCATTCCCCAAAAAAGTACAACGTATGCTTATATGCATTACCAAAGGAAATACAGAGTTACAAATACAATTGCTCTCGGGGGTTCCCAATATCGGGAAAAAATTACCTGCCGAAATTTTACAAGATCATGCGCTTCTTTTTTTTCTATATCAGCCCGTACAATGCTTGGCAAATATACAAATCGCTCAAAAAACCCGTACGATTATGTTGGGAATGCAGCGAGCCGAAGCGATTCATTATTTTTTATACTGGTGTGGGTCTGTCCATGTATCCGATGTTACCCAAAATATCACAAAGACGTCGCGGCCCACAATGCAGGTCGCGACGCAGCCCGCTGCAACGCAGCCCATTGCACGAAGTATCAGATGATGCATCATCTAATGCATCAGATGCTTCATCACCCACAGGGCATCAAACATTATCTAAAGAAATGCCATTGAACACAGCCTGA
Protein
MYFTKKYIGLIVTNCAKKILHVCTTIQICYILFGILFGTIMLSLIYIFIFWENYIQCYRNIVTMFYCPIVWVGYIIVCYYFTIGTFSTNYTAATISCIQLYTTLAIIVTILLYLSTIYIIQSMYWVINSILCQYILQHMYYYIWTKKLFTQYNYYNLLFPQLLHIFVLFLYYHVQILLGQMLLYIYLLLLQLLLLLLEISLFIIGMVLLFLQLHVCLLLQLLHCMQQKIYIVLIQYYIHIKIILQYLYIILYHIFYCVWIIITYFYFNHICIVYTKKKKNPCRNTKSTTICIYCRRHFSSCHHFHTCTISQRAITSYTIYSLSVYYTYLLHASLNTTTQSISPTYTVSSTYTVPATQTMPATYTMSSTYTVPATQTMPATYTMSSTYTMFFTCIIFSTQTTTYYPAATQYPAIIYTKYFAYSCTYNYLIFQAGLHLNLKSTNKKCIFYYQIIENIMCFLFLQPIFITCIKILYKKIKLPYKSSSFLPEIISSAKALPRFWPVLYEKPTKTLRLLCKMDVIQIAKKCYRCENKPTVNFIFLYKARHFLTLKKKLFTLPMQALLLLCRILWLQIICLSFKRKMWPTVPKSLCSFFMPFLWKWCASFPPPSPPRMQSYAPSYGLLFLVFQACYVQSWQTLVPYLIWLLESFHRRILFSYKPPPTGHSPKKYNVCLYALPKEIQSYKYNCSRGFPISGKNYLPKFYKIMRFFFFYISPYNAWQIYKSLKKPVRLCWECSEPKRFIIFYTGVGLSMYPMLPKISQRRRGPQCRSRRSPLQRSPLHEVSDDASSNASDASSPTGHQTLSKEMPLNTAX

Summary

Function
Participates to viral hemadsorption, which may help viral spread (PubMed:10639320). Reduces the transactivating activity of host TP53, thus inhibiting apoptosis (PubMed:15262504). Non-essential for virus growth in swine macrophage cell cultures (By similarity).
Participates to viral hemadsorption, which may help viral spread. Reduces the transactivating activity of host TP53, thus inhibiting apoptosis (By similarity). Non-essential for virus growth in swine macrophage cell cultures (By similarity).
Participates to viral hemadsorption, which may help viral spread. Reduces the transactivating activity of host TP53, thus inhibiting apoptosis (By similarity). Non-essential for virus growth in swine macrophage cell cultures (PubMed:10573162).
Similarity
Belongs to the asfivirus lectin-like protein family.
Keywords
Complete proteome   Glycoprotein   Host membrane   Host-virus interaction   Lectin   Membrane   Modulation of host cell apoptosis by virus   Reference proteome   Signal-anchor   Transmembrane   Transmembrane helix   Late protein  
Feature
chain  Lectin-like protein EP153R
EMBL
AF017034    AAC28419.1    AF017037    AAC28422.1    AF481876    AAM90853.1    + More
AM712239    CAN10157.1    FN557520    CBH29158.1    AF017030    AF017031    AF017032    AY463913    AY463915    AY463916    DQ026264    DQ026266    DQ026267    DQ026268    DQ026269    DQ026270    KM262844    KM609334    KM609337    KM609350    KM609351    KM609352    KM609355    KM102979    KP055815    KX354450    AAC28417.1    AAS45763.1    AAY44916.1    AAY44920.1    AAY44922.1    AAY44925.1    AAY44926.1    AAY44928.1    AIY22248.1    AJB28357.1    AJB28363.1    AJB28385.1    AJB28387.1    AJB28389.1    AJB28393.1    AJZ77151.1    AKO62739.1    AOO54389.1    U18466    AF017033    AAC28418.1    KM111294    AJL34071.1    KM111295    MH025916    MH025917    MH025918    MH025919    MH025920    AJL34236.1    AXB49286.1    AXB49460.1    AXB49632.1    AXB49803.1    AXB49976.1    AY261363    AF017036    AF050111    KM609361    AJB28404.1    KM609340    KM609343    KM609344    KM609345    AJB28367.1    AJB28372.1    AJB28374.1    AJB28376.1    AF017027    AAC28412.1    AF017035    KM609354    AAC28420.1    AJB28391.1    AY261361    DQ026265    AAY44918.1    AF017029    AAC28414.1    KM609346    KM609347    AJB28377.1    AJB28379.1    KM609336    AJB28361.1    KM609348    AJB28381.1    KM609335    AJB28359.1    KM609359    AJB28400.1    AF017038    AAC28423.1   
Pfam
PF05473   UL45
Interpro
IPR016187   CTDL_fold
IPR008646   Herpes_UL45-like
IPR016186   C-type_lectin-like/link_sf
SUPFAM
SSF56436   SSF56436
Gene 3D
PDB
6G4G     E-value=1.20922,     Score=77

Ontologies

KEGG

Subcellular Location

From MSLVP
Others-Single
From Uniprot
Host membrane  
Host membrane  

Topology

Length:
812
Number of predicted TMHs:
13
Exp number of AAs in TMHs:
314.14628
Exp number, first 60 AAs:
23.6593
Total prob of N-in:
0.88608
POSSIBLE N-term signal
sequence
Length:
811
Number of predicted TMHs:
13
Exp number of AAs in TMHs:
314.21753
Exp number, first 60 AAs:
23.6593
Total prob of N-in:
0.88609
POSSIBLE N-term signal
sequence
inside
1  -  28
TMhelix
29  -  51
outside
52  -  60
TMhelix
61  -  83
inside
84  -  94
TMhelix
95  -  117
outside
118  -  121
TMhelix
122  -  144
inside
145  -  156
TMhelix
157  -  179
outside
180  -  188
TMhelix
189  -  211
inside
212  -  215
TMhelix
216  -  238
outside
239  -  247
TMhelix
248  -  270
inside
271  -  380
TMhelix
381  -  403
outside
404  -  407
TMhelix
408  -  430
inside
431  -  450
TMhelix
451  -  473
outside
474  -  554
TMhelix
555  -  577
inside
578  -  620
TMhelix
621  -  643
outside
644  -  812
inside
1  -  28
TMhelix
29  -  51
outside
52  -  60
TMhelix
61  -  83
inside
84  -  94
TMhelix
95  -  117
outside
118  -  121
TMhelix
122  -  144
inside
145  -  156
TMhelix
157  -  179
outside
180  -  188
TMhelix
189  -  211
inside
212  -  215
TMhelix
216  -  238
outside
239  -  247
TMhelix
248  -  270
inside
271  -  380
TMhelix
381  -  403
outside
404  -  407
TMhelix
408  -  430
inside
431  -  450
TMhelix
451  -  473
outside
474  -  554
TMhelix
555  -  577
inside
578  -  620
TMhelix
621  -  643
outside
644  -  811
 
 

Population Genetic Test Statistics

Pi
0.0734533
Theta
0.0820492
Tajima's D
-0.9907127
CLR
0.400281
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014    
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985    
South_Africa_2_2008 Protein
Protein
QGM12837.1
QGM12837.1
Zambia_LIV_1983 Protein
QGM12719.1
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