Strain

Zambia_LIV_1983 (Region: Zambia; Strain: LIV_5_40; Date: 1983)

Gene

pE248R

Description

Annotated in NCBI, E248R

Location

MN318203.1(+):162102-162848

GenBank Accession

QGM12764.1

CDS

ATGGGAGGCTCTACAAGCAAAAATTCCTTTACAAATACGACCAACATTATCAGCAATTCCATTTTCAATCAGATGCAAAATTGTATTTCCATGTTGGATGGCAAAAATTACATACGCGTATTCGGTGTTGGAAATATTTTATACCACGTTTTCCAGGATTTATACTTATCATTATACACAAGTTGCGTGCAAAAGCACGTATACGAGGAAAATTTCATTACAAATCTTTCGAACCAAATTACTCAAAATTTACAAGACCAAGAAGTTGCGTTATCCCAATGGATGGACGCAGGACATCACGATCAGAAAACGGATATACAAGAAAATATATACGTATACTTATCAACCACACTTATTCAAAACTGCGTTTCATCCCTGTCGGGTATGTACGTGCTGGTGGTGTACGGGAATGGCAATATTGTTGCAAACGCAACTCAGAAGCAGTCGCAGCAAATCATCTCTATCTGCTTGCAGGGGAGCAAGCAGGCCATACACACCACAACCGGCATCACTATCACGGTATACCAGTACTCACACTACACCTCAAAAAACTTTTTTGTCTTCATTGCAGACGCAATTTCGGCTGTTTTTACAAACATCATGGTTGCGGCCGTACTTATCGTTCTATTCATCGTACGGTTTATACCCGTCTTTTACTTTTTGCATTCACGGCACCGTCACGAGGAGGAAGAAGAAGCTGTACCGCTCATATGCAACAAGGTATTACAAAACGCTGCCGTTTCGTAA

Protein

MGGSTSKNSFTNTTNIISNSIFNQMQNCISMLDGKNYIRVFGVGNILYHVFQDLYLSLYTSCVQKHVYEENFITNLSNQITQNLQDQEVALSQWMDAGHHDQKTDIQENIYVYLSTTLIQNCVSSLSGMYVLVVYGNGNIVANATQKQSQQIISICLQGSKQAIHTTTGITITVYQYSHYTSKNFFVFIADAISAVFTNIMVAAVLIVLFIVRFIPVFYFLHSRHRHEEEEEAVPLICNKVLQNAAVS

Uniprot

NA

ProteinModelPortal

NA

PDB

1TX9 E-value=9.31191, Score=64

Ontologies

Subcellular Location

From MSLVP

Single-Pass Membrane

Topology

Length:

248

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

47.4456

Exp number, first 60 AAs:

6.14495

Total prob of N-in:

0.51374

outside

1 - 194

TMhelix

195 - 217

inside

218 - 248

Population Genetic Test Statistics

Pi

0.026529

Theta

0.0341329

Tajima's D

-0.507088

CLR

0.095036

Interpretation

No evidence of Selection

Multiple alignment of Orthologues

Gene Tree

Orthologous in Strains

Strain	Status	Gene
Spain_BA71_1971	Protein	AKO62812.1
China_AnhuiXCGQ_2018	Protein	AYW34102.1
China_ASFV-SY18_2018	Protein	AKO62812.1
Poland_Pol16_20186_o7_2016-2017	Protein	AXZ95903.1
Poland_Pol16_20538_o9_2016-2017	Protein	AJL34144.1
Poland_Pol16_20540_o10_2016-2017	Protein	AJL34144.1
Poland_Pol16_29413_o23_2016-2017	Protein	AJL34144.1
Poland_Pol17_03029_C201_2016-2017	Protein	AJL34144.1
Poland_Pol17_04461_C210_2016-2017	Protein	AXZ96186.1
Poland_Pol17_05838_C220_2016-2017	Protein	AJL34144.1
Poland_ASFV_POL_Podlaskie_2015	Protein	AJL34144.1
Uganda_R8_2015	Protein	AXB49360.1
Uganda_R7_2015	Protein	AXB49534.1
Uganda_R25_2015	Protein	AXB49706.1
Uganda_N10_2015	Protein	AXB49877.1
Uganda_R35_2015	Protein	AXB50050.1
Estonia_2014	Protein	SPS73554.1
Italy_26544_OG10_2010	Protein	AJZ77119.1
Italy_47_Ss_2008_2008	Protein	AOO54501.1
Portugal_OURT_88.3_1988	Protein	CAN10480.1
Spain_E75_1975	Protein	CBH29231.1
Russia_Georgia_2007	Protein	CBW46797.1
Kenya_Tk1_2005	Protein Protein	AJL34144.1 AJL34144.1
Kenya_Bus_2006	Protein	AJL34309.1
Russia_Odintsovo_2014	Protein	AJL34144.1
Portugal_L60_1960	Protein	AIY22322.1
Portugal_NHV_1968	Protein	AIY22480.1
Russia_Kashino_2013	Protein	AJL34144.1
Benin_1997	Protein	CAN10231.1
South_Africa_KNP_Pretorisuskop_1996	Protein	AJL34144.1
South_Africa_MGR_Mkuzi_1979	Protein	AJL34144.1
Malawi_Lil_1983	Protein	AJL34144.1
Kenya_1950	Protein	AJL34144.1
Namibia_Warthog_1980	Protein	AJL34144.1
South_Africa_Warmbaths_1987	Protein	AJL34144.1
Malawi_Tengani_1962	Protein	AJL34144.1
China_HLJ_2018	Protein	QBH90619.1
China_LN_2018	Protein	QBH90804.1
China_wbBS01_2018	Protein	QDL88162.1
Ukraine_Kyiv_2014	Protein Protein	QED21744.1 QED21745.1
Belgium_Etalle_wb_2018	Protein	QED90574.1
Lithuania_LT14_2014	Protein	QEY87937.1
South_Africa_1985	Protein	QGM12943.1
South_Africa_2_2008	Protein	QGM12869.1
Zambia_LIV_1983	Protein	QGM12764.1

Sequence