Strain
Zambia_LIV_1983
(Region: Zambia; Strain: LIV_5_40; Date: 1983)
Gene
pNP1450L
Description
Annotated in NCBI,
NP1450L
Location
GenBank Accession
Sequence
CDS
ATGTCAATCATGGAATCAACACTTTTATATTTTTCCGTATTATATTTTTCATCCATATTGTTGTCAGAGTACATGGTCCCTATGCGAGGAACAGAGCCCATATGGGTACGCGCGGCAATGCCGTATATGGGATTCACGGCGGAGTCGACCGCAGCATCTGTCAAGACCTGTACTGGAGACGACAAGGCCATTCGCAACAACACGTTGGAAGGCTCTCTTGCATTATGCCCTGCCTTTTCTACAGAGGTATCCTGTCCCGTTCTTGTCATGTGTTCTGCGTACATGTTTATATGTCGATGGTTGGGACCCTTGTCCCCCATATCCGTTCTATTTTCACTATTATTTTTTTGTCGGGCCGCTTCTATGCCGTATACCTCCATGGTATCTCCTATACAGGACGACACGATGGTGTATGGGTCGATGTTATCATCAAGTATTGCGCCAAAAATATTACTCCCGTTTGTTTTGTTGGCGTACATATTATCTACTCTTACCAGCTTTCCCTGGGCATCCACACGGTGGCGCATATGCTTATCAACATTCGCATTTTTGTTGCCTGGTATTCCTCTATTCGTGCTATTTATTACTTTATCCACCACATTTACGGCGATTTTTTCATCCGTACCCATTCGGGTATTACTACTGCGTCTATACGCGCTTTCCCGTACATATATGCGAATATTGTTGGGAATACCTGTGGCCGTGTTTTCCACAGAATGCATGTTGTACGTGTTGGGGTGCTTACCTCTTACACTATTATTATTACTTTCTACACTATTGCTTTTTATTATCATGGTTGTTTTATTTATTTCCAAGCGGATACACCAGTTTGCAATATCCTCCGGAGGCTGTACTACAGGATGGTTTACATCACTTGCAAAATCGGGGTACATCACATTTTTTTTTGTGCTTGTATACGTTTCGTACAATACGTGCCACTGCAGTATCAACCGTTCGAACGTTATATGCTCTATGCTGTTACCAATTTCTTGCGCATATGTTTTATTTGTTTCCACTTCTGGATTCTTTACACGTACAAGCATTTCAGAGGATTGTTCAGCCTCTACGGGCTTCGCGCTATACATTTCCTGGGGCCGCACAATTCCCGACTTGTTGGTTCCCCCGGCCACGGACCGGTGGTGGGAGTCCAGCATATATTGCGTCAAGGGCTCTGTTACGGACTGTGCCGCCAGGATTCCCACTGCCTCACCGTACTTATTATGTCTTTGTGTATATTGTACCCTTATGTGGTCCAGGATGGCACTCATCTGCTCGCAGGTATTGTTTATTGTTTTATCGGTTGCCAGTTCGATGCGAATATGCATGCGCATCAGAGAGGCAGCCCGTTTATGTTATACGGGTATGGGCGTTTGTACTCGTTCCTGTATGTTGTTATTACACACGTATGGAAGATTTTTGCAAAACGTTTTGTCCATCGCGTATTTTTGTACAATACTTTTTTCGTCGAAGGGAAGCACGCCACTGGTGGAGCTCAGTACAATGTTTTTTACGATGCTGGCCACGTTTACCGGCACCTGTCTATCATCTGTATGCAGCTGTCTGCAATTACAATTTTCGACGTTTACGAAGATCTGTCGATATTTATCTCTATCCTTTTTATGGCGTGCAAATTCTTCTTCAAACAAGGGGGATTGTATCCCGGTGTACTTGTATTTGTCCTCAAGTTCCTGGTCCGACAGCATGTTGGTTTCAAACCGTACGGTTTCAAGCTGGCGCGCATCAAGGCCATCCTCTCCGTACAACTGCTGCACAAGACGCGTATCGATGGAAACCCGTCGGTATTATTCCACAATACAGGATTGTACGCCAAAGATGGCTTTACGGTTGGCATACCCTGTGGATGTTGTCGATATTGCTTTGTTGTTCAAGTCGAATCTTCCATTCATTTCCCCAAAGATATATTCAGGGGAGGTATGGCCCGCAATATACCTGTTGCAGATGTACCCGTACGCCTGCGCCTCCAGGGCAAACCTGGGGTACTACACCAGGGTCCTGCCGAAGGAAAACTGGGGTTGTATGCGTTGTGTATTATTTTCAATTTGGCCGATGCCCGCCATGTTGTGTATCATATTGGGGTTTGTGCCCTTGGCGCCAGTGGCCACCATCTGCAAAAGCCCATTGGTTTCCGGATTATTGGAATTCATATTCGGCTTTACAATCCTATCGGGAAATTTATGCGCATTCAGCTGCAATTTTTCGTACAAGTCATGCGTTGTCAGGCCTATACGCGGCATGTTGTCTCCATGTACCAGCCGGTTGTTTATTTCTTCCGACTCAAGCAGCAGTTCATTGTTATTTTCTTGGACCTCCTGTTGCGCCTCCGGGGTTATGTGCATGTCGGCCGTGGACACTGTGTATCCGGCGTTGCGCACGTACTTCAGGGCGAGCTGCTGGGTCGCAAATATCATTTTCAAGGCCTGCTGCGGCCCATACCTACGCGAAATATGGTGTTACATTCCACCGGAGGAGCCCGCTCCGACGGCCTTTTTGTCAAGGACGCCTTCAATGTGTTCGCCGTTGCGTATTTGTGTACAGATGTCCTGCTTGTTATATTGCATGTACGGCGCATACACTTCTGTGTACCATGTGGGGGCTCGTTGTTATTTGTTGGGGGTCTGCTTCAGTATCATACATACAACCGATTTGCCATCCAGCAGGTCAGTTGGGGAGTACTTGGCAAAACAAGGTGGGTCCGTTTGGGTTGTTTGCAACAATCCCATGGCGTGCAGTTTGTTCATCACATTTTTCCCCATGGGGGTATTCGTGCGTGTATGCAAAAAGCTTCCCACTGTGGAGTCCTGCACCTGCCCATTATCGGGACCCGAGCTCTTCGTGGAAATGTACCAGTTTCGCACAGAACAAAGTACTTCGGCCTCAACGCGGCTCATGTCGCTCCAGGGAACCCAGAGATTCATCTGTTCCCCATCAAAGTCCGCATTATACCAGGCACATGCGCTGTCATTCATTTGCAACGTACAAATTTTTGGGTTTTCAAGAACGACAATCCGGTGTACCCCTATGCTGCTTCGTTCGAGAGAAGGCTGGCGATTACAAAACGCGACGTCGCCAGTGTCGACATCACGGTATACGATGTCTCCTACCTCCAGTCTATACTCTTGTTTGTGTCCCTCAATATCGTGTACGGATTGTGTTATTTGCTTATACACTCTTGTACAACCAGGGTACTGGCGCTTTCCATTTACAAAATACGGCATTATTCTATTATTATTATATTGTTGCACTGTTTCCGCAACTTGCAGCGTTCGTGCAAAGGAAATGGGATACCCAACCTCGTCCAGGTGTACGTCTGTGTTCCCGCAGATGGTGGACCGGCTGTTCGACCATACCTGGCTGCCCAGTACGGATTTACGAATTCTTCCCTCCTTGCGAGGAAGTCTTCGCATGTTGGAGGGAGCAGGGCGGGCCCCCATGTCGATCCCACGCTTTCCCGTGCCTCCCTGGGTTGCGGTGGTGGAAACGGAATCCAACAAAAAGTTATACTATACTTGTTGTATGGTTTGCAAATTGCGGTCAATATTTATACGTATTTTTTGGCCGCGCACGATTTGTACGTCCTTTGGGATCAGCATATTCTTTCGAACCAGATACTGGATCACGTTATTATTGTCGTGCAAGCTTTGGGGGCCTGTCCCGATTCCCAATCTGTTGCCAGGTCGTATGCTGTTGGGGGGGATCTGTATGGCCTTATGCACAAGTTTTTCGGGATGGGAGTTTTTACTTCGCCCCAGTTTTACAACGGTGTCGTACGTTACGCGCGAAAAAATCTCTCTGTTGTTCTGCGGGTACAGTTTGTCAATCTTGCCCTGCTGTTCCACCCAAAAGGTACAATATTCTTCCGAGTCCTTATCAATTTTGGGGTGTACTGCCTTACAGACGTACCACTGCTTTCCTTCGGTTTGGCTTGTACCCGCTTCAATATGTCGCTTACGCCTATTATGTTGCTCGTACCTCTTTACGTCAACAATGGGAGCCCCGCAGTTGTGGCATATATCCCTTATCCATCGTCGTATTTCGGCGATGTACAGCGGCTGTACCACCGGAGCATGCATCTGCAGTATCCCAGGGTGTCCCATACATTGCTTGCGCTGGTGTGTGCAAGTGTTGCATTTATATTGGTGTTCGGTGGTTCCCATTCGCGCATCATACATACCCCCCTCGGCGGGAAGGGTGCCCTCAAATATATTACAAATGGTATCCTCCATATCGCCTTGCCTCTTATGGTCATTGTCACCGGCAATATTATACTGTACGGCGGCTATTTCGGCATATCCAGCCTCCATATTTTTGCTAAATACATAA
Protein
MSIMESTLLYFSVLYFSSILLSEYMVPMRGTEPIWVRAAMPYMGFTAESTAASVKTCTGDDKAIRNNTLEGSLALCPAFSTEVSCPVLVMCSAYMFICRWLGPLSPISVLFSLLFFCRAASMPYTSMVSPIQDDTMVYGSMLSSSIAPKILLPFVLLAYILSTLTSFPWASTRWRICLSTFAFLLPGIPLFVLFITLSTTFTAIFSSVPIRVLLLRLYALSRTYMRILLGIPVAVFSTECMLYVLGCLPLTLLLLLSTLLLFIIMVVLFISKRIHQFAISSGGCTTGWFTSLAKSGYITFFFVLVYVSYNTCHCSINRSNVICSMLLPISCAYVLFVSTSGFFTRTSISEDCSASTGFALYISWGRTIPDLLVPPATDRWWESSIYCVKGSVTDCAARIPTASPYLLCLCVYCTLMWSRMALICSQVLFIVLSVASSMRICMRIREAARLCYTGMGVCTRSCMLLLHTYGRFLQNVLSIAYFCTILFSSKGSTPLVELSTMFFTMLATFTGTCLSSVCSCLQLQFSTFTKICRYLSLSFLWRANSSSNKGDCIPVYLYLSSSSWSDSMLVSNRTVSSWRASRPSSPYNCCTRRVSMETRRYYSTIQDCTPKMALRLAYPVDVVDIALLFKSNLPFISPKIYSGEVWPAIYLLQMYPYACASRANLGYYTRVLPKENWGCMRCVLFSIWPMPAMLCIILGFVPLAPVATICKSPLVSGLLEFIFGFTILSGNLCAFSCNFSYKSCVVRPIRGMLSPCTSRLFISSDSSSSSLLFSWTSCCASGVMCMSAVDTVYPALRTYFRASCWVANIIFKACCGPYLREIWCYIPPEEPAPTAFLSRTPSMCSPLRICVQMSCLLYCMYGAYTSVYHVGARCYLLGVCFSIIHTTDLPSSRSVGEYLAKQGGSVWVVCNNPMACSLFITFFPMGVFVRVCKKLPTVESCTCPLSGPELFVEMYQFRTEQSTSASTRLMSLQGTQRFICSPSKSALYQAHALSFICNVQIFGFSRTTIRCTPMLLRSREGWRLQNATSPVSTSRYTMSPTSSLYSCLCPSISCTDCVICLYTLVQPGYWRFPFTKYGIILLLLYCCTVSATCSVRAKEMGYPTSSRCTSVFPQMVDRLFDHTWLPSTDLRILPSLRGSLRMLEGAGRAPMSIPRFPVPPWVAVVETESNKKLYYTCCMVCKLRSIFIRIFWPRTICTSFGISIFFRTRYWITLLLSCKLWGPVPIPNLLPGRMLLGGICMALCTSFSGWEFLLRPSFTTVSYVTREKISLLFCGYSLSILPCCSTQKVQYSSESLSILGCTALQTYHCFPSVWLVPASICRLRLLCCSYLFTSTMGAPQLWHISLIHRRISAMYSGCTTGACICSIPGCPIHCLRWCVQVLHLYWCSVVPIRASYIPPSAGRVPSNILQMVSSISPCLLWSLSPAILYCTAAISAYPASIFLLNTX
Summary
Uniprot
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Capsid
Topology
Length:
1447
Number of predicted TMHs:
19
Exp number of AAs in TMHs:
453.045209999999
Exp number, first 60 AAs:
19.01541
Total prob of N-in:
0.65922
POSSIBLE N-term signal
sequence
Length:
1446
Number of predicted TMHs:
19
Exp number of AAs in TMHs:
452.753209999999
Exp number, first 60 AAs:
19.01541
Total prob of N-in:
0.65922
POSSIBLE N-term signal
sequence
inside
1 - 99
TMhelix
100 - 122
outside
123 - 149
TMhelix
150 - 169
inside
170 - 180
TMhelix
181 - 203
outside
204 - 222
TMhelix
223 - 245
inside
246 - 251
TMhelix
252 - 271
outside
272 - 285
TMhelix
286 - 308
inside
309 - 320
TMhelix
321 - 343
outside
344 - 414
TMhelix
415 - 437
inside
438 - 463
TMhelix
464 - 486
outside
487 - 500
TMhelix
501 - 523
inside
524 - 681
TMhelix
682 - 704
outside
705 - 718
TMhelix
719 - 741
inside
742 - 864
TMhelix
865 - 887
outside
888 - 906
TMhelix
907 - 929
inside
930 - 1042
TMhelix
1043 - 1065
outside
1066 - 1074
TMhelix
1075 - 1097
inside
1098 - 1189
TMhelix
1190 - 1212
outside
1213 - 1231
TMhelix
1232 - 1254
inside
1255 - 1418
TMhelix
1419 - 1441
outside
1442 - 1447
inside
1 - 99
TMhelix
100 - 122
outside
123 - 149
TMhelix
150 - 169
inside
170 - 180
TMhelix
181 - 203
outside
204 - 222
TMhelix
223 - 245
inside
246 - 251
TMhelix
252 - 271
outside
272 - 285
TMhelix
286 - 308
inside
309 - 320
TMhelix
321 - 343
outside
344 - 414
TMhelix
415 - 437
inside
438 - 463
TMhelix
464 - 486
outside
487 - 500
TMhelix
501 - 523
inside
524 - 681
TMhelix
682 - 704
outside
705 - 718
TMhelix
719 - 741
inside
742 - 864
TMhelix
865 - 887
outside
888 - 906
TMhelix
907 - 929
inside
930 - 1042
TMhelix
1043 - 1065
outside
1066 - 1074
TMhelix
1075 - 1097
inside
1098 - 1189
TMhelix
1190 - 1212
outside
1213 - 1231
TMhelix
1232 - 1254
inside
1255 - 1418
TMhelix
1419 - 1441
outside
1442 - 1446
Population Genetic Test Statistics
Pi
0.0284939
Theta
0.0375462
Tajima's D
-0.8811365
CLR
0.022517
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 | |||
| China_ASFV-SY18_2018 |
Protein |
AOO54451.1 |
|
| Poland_Pol16_20186_o7_2016-2017 | |||
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 | |||
| Poland_Pol17_03029_C201_2016-2017 | |||
| Poland_Pol17_04461_C210_2016-2017 | |||
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 | |||
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 |
Protein Protein Protein |
AOO54451.1 AOO54452.1 AOO54454.1 |
|
| Portugal_OURT_88.3_1988 | |||
| Spain_E75_1975 | |||
| Russia_Georgia_2007 | |||
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 | |||
| Russia_Kashino_2013 | |||
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 | |||
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 | |||
| China_LN_2018 | |||
| China_wbBS01_2018 | |||
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 | |||
| Lithuania_LT14_2014 | |||
| South_Africa_1985 |
Protein |
QGM12741.1 |
|
| South_Africa_2_2008 |
Protein |
QGM12741.1 |
|
| Zambia_LIV_1983 |
Protein Protein |
QGM12741.1 QGM12741.1 |
