ASFVdb The African Swine Fever Virus Database
Strain
South_Africa_2_2008 (Region: South Africa;  Strain: RSA_2_2008;  Date: 2008)
Gene
pNP1450L
Description
With frameshift mutation but translatable,  pNP1450L
GenBank Accession
 

Sequence

CDS
ATGGAATCAACACTTTTATATTTTTCCGTAATATATTTTTCATCCATATTGTTGTCAGAGTACATGGTCCCTATGCGAGGAACAGAGCCCATATGGGTACGCGCGGCAATACCGTATATGGGATTCACGGCGGAGTCAACCGCAGCATCTGTCAAGACCTGGACTGGAGACGACAAGGCCATTCGCAACAGCACGTTGGAAGGCTCTCTTGCATTATGCCCTGCCTTTTCTACAGAGGTATCCTGTCCCGTTCTTGTCATGCGATCTGCGTACATGCGTACATGTCGATGGTTGGGACCCTTGTCCCCCATATCCGTTCTATTTTCACTATTATTTTTTTGCCGTGCCGCTTCTATGCCGTACAGCTCCATGGTGTCTCCTATACAGGACGACACGATGGTGTATGGGTCAATGTTATCATCAAGCATTGCGCCAAAAATATTACTCCCGTTTGTTTTGTTGGCGTACATATTATCTACTCTTACCAGCTTTCCCTGGGCATCCACACGGTGTCGCATATGCTTATCAACATTCGCATTTTTGTTGCCTGGTATTCCTCTATTCGTGCTATTTATTACTTTATCCACCACATTTACGGCGATTTTTTCATCCGTACCCATTCGGGTATTACTACTGCGTCTACAGGCGCTTTCTCGTACATATATGCGAATATTGTTGGGAATACCTGTGGCCGTGTTTTCCACAGAATGCATGTTGTACGTGTTGGGGTGTTTACCTCTTACACTATTATTATTACTTTCTACACTATTGCTTTTTATTATCATGGTTGTTTTGTTTATTTCCAAGCGGATACACCAGTTTGCAATATCCTCCGGGGGCTGTACTACAGGATGGTTTTCCAGAAAATCCGTTATCCATTCCACATCACTTGCAAAATCGGGGTACATCACATTTTTTTTTGTGCTTGTATACGTTTCGTACAATACGTGCCACTGCAGTATCAACCGTTCGAACGTTATATGCTCTATGCTGTTACCAATTTCTTGCGCATATGTTTTATTTGTTTCCACTTCCGGATTCTTTACGCGTACAAGCATTTCAGAGGATTGTTCAGCCTCTACGGGCTTCGCGCTACAGATCTCCTGGGGCCGCACAATTCCCGACTTGTTGGTTCCCCCAGCCACGGACCGGTGGTGGGAGTCCAGCATATATTGTGTCAAGGGCTCTGTTACGGACTGTGCCGCCAGAATTCCCACTGCCTCACCGTACTTATTACGACTTTGTGTATATTGTACCCTTATGTGGTCCAGGATGGCACTCATCTGCTCGCAGGTATTGTTTATTGTTTTATCGGTTGCCAGTTCGATGCGAATATGCATGCGCATCAGAGAGGCAGCCCGTTTACGATATACGGGTATGGGCGTTTGTACCCGTTCCTGCATGTTGTTATTATACACGTATGGAAGATTTTTGCAAAACGTTTTGTCCATCGTGTATTTTTGTACAATACTTTTTTCGTCGAAGGGAAGCACGCCACTGGCGGAGCTCAGTACAATGTTTTTTACGATGCTGGCCACGTTTACCGGCACCTGTCTATCATCTGTATGCAGCTGTCTGCAATTACAATTTTCGACGTTTACGAAGATCTGTCGATATTTATCTCTATCCTTTTTATGGCGTGCAAATTCTTCTTCAAACAAGGGCGATTGTATCCCGGTGTACTTGTATTTGTCTTCAAGTTCCTGGTCCGACAGCATGTTGGTTTCAAACCGTACGGTTTCAAGCTGGCGCGCATCAAGGCCGTCCTCTCCGTACAACTGCTGCACAAGACGCGTATCGATGGAAACCCGTCGGTATTATTCCACAATACAGGATTGCAGGCCAAAGATACCTTTACGGTTGGCATACCCTGTACATGTTGTCGATACTGCTTTGTTGTTCAAGTCGAATCTTCCATTCATTTCCCCAAAGATATATTCAGGGGAGGTATGGCCCGCAATATACCTGTTGCAGATGTACCCGTACGCCTGCGCCTCCAGGGCAAACCTGGGGTACTACACCAGGGTCCTGCCGAAGGAAAACTGGGGTTGTATGCGCTGTGTATTATTTTCAATTTGGCCGATGCCCGCCATGTTGTGTATCATATTGGGGTTTGTGCCCTTGGCGCCAGTGGCCACCATCTGCAAAAGCCCATTGGTTTCCGGATTATTGGAATTCATATTCGGCTTTACAATCCTATCGGGAAATTTATGCGCATTCAGCTGCAATTTTTCGTACAAGTCATGCGTTGTCAGGCCTATACGCGGCATGTTGTCTCCATGCAGCAGCCGGTTGTTTATTTCCTCCGACTCAAGCAGCAGTTCATTGTTATTTTCTTGGACCTCCTGTTGCGCCTCCGGGGTTACGAGCATGTCGGCCGTGGACACTGTGTATCCGGCGTTGCGCACGTACTTCAGGGCGAGCTGCTGGGTCGCAAATATCATTTTCAAGGCCTGCTGCGGCCCATATCTACGCGAAATATGGTGTTACATTCCACCGGAGGAGCCCGCTCCGACGGCCTTTTTGTCAAGGACGCCTTCAATGTGTTCACCGTTGCGTATTTGTGTACAGATGTCCTGCTTGTTATATTGCATGTACGGCGCATATACTTCTGTGTACCATGTGGGGGCTCGTTGTTATTTGTTGGGGGTCTGTCTCAGTACCATACATACAACCGATTTGCCATCCAGCAGGTCAGTTGGGGAGTACTTACCAAAACAAGGTGGGTCGGTTTGGGTTGTTTGCAACAACCCCATGGCGTGCAGCTTGTTCATCACATTTTTCCCCATGGGGGTGTTCGTGCGTGTATGCAAAAAGCTTCCCACTGTGGAGTCCTGCACCTGCCCATTATCGGGACCCGAGCTCTTCGTGGAAATGTACCAGTTTCGCACAGAACAAAGTACTTCGGCCTCAACGCGGCTCATGTCGCTCCAGGGAACCCAGAGATTCATCTGTTCCCCATCAAAGTCCGCATTATACCAGGCACATGCGCTGTCATTCATTTGCAACGTACAAATTTTTGGGTTTTCAAGAACGACAATCCGGTGTACCCCTATGCTGCTTCGTTCGAGAGAAGGCTGGCGATTACAAAACGCGACGTCGCCAGTGTCGACGTCACGGTACAGGATGTCTCCTACCTCCAGTCTACAGTCTTGTTTGCGACCCTCAATGTCGTGTACGGATTGTGTTATTTGTTTATACACTCTTGTACAACCAGGGTACTGGCGCTTTCCGTTTACAAAATATGGCATTATTCTATTATTATTATATTGTTGCACTGTTTCCGCAACTTGCAGCGTTCGTGCAAAGGAAATACGATACCCAACCTCGTCCAGGTGCAGGTCTGTGTTCCCGCAGATGGTGGACCGGCTGTTCGACCATACCTGGCTGCCCAGTACGGATTTACGAATTCTTCCCTCCTTGCGAGGAAGTCTTCGCATGTTGGAGGGAGCGGGGCGGGCCCCCATGTCGATCCCACGCTTTCCTGTGCCTCCCTGGGTTGCGGTGGTGGAAACGGAATCCAACAAAAAGTTATATTACAGTTGCTGTATGGTTTGTATATTGCGGTCAATATTTACAGGTATTTTTTGGCCGCGCACGATTTGTATGTCCTTCGGGATCAGCAGATTCTTTCGAACCAGATACTGTATCACGTTATTATTGTCGTGCAAGCTTTGGGGGCCTGTTCCGATTCCCAATCTGTTACCAGGTCGTATGCTGTTGGGGGGGATCTGTATGGCCTTATGCACAAGTTTTTCGGGATGGGAGTTTTTACTTCGCCCCAGTTTTACAACGGTGTCGTACGTTACGCGCGAAAAGATCTCTCTGTTATTTTGCGGGTACAGTTTGTCAATCTTGCCCTGCTGTTCTACCCAAAAGGTACAATATTCTTCCGAGTCCTTATTATTCTTACGATGTATTACCTTACAGACGTACCACTGCTTTCCTTCGGTCTGGCTTGCAGCCGCTTCAATATGTCGCTTACGCCTATTATGGTGCTCGTACCTCTTTACGTCAACGATGGGAGCCCCGCAGTTGTGGCATATATCCCTTATCCATCGACGTATTTCGGCGATGCAGAGCGGCTGCAGCACCGGAGCATGCATCTGCAGTATCCCAGGGTGTCCCATACATTGCTTGCGCTGGTGTGTGCAAGTGTTGCATTTATATTGTTGTTCGGTGGTTCCCATTCGCGCATCATACATGCCCCCCTCGGCGGGAAGGGTGCCCTCAAATATATTGGAAATGGTATCCTCCATATCGCCTTGCCTCTTATGTTCATTGTCACCGGCAATATTGTACTGTACGGCAGCTATTTCGGCATATCCAGCCTCCATATTTTTGCTAAATACATAA
Protein
MESTLLYFSVIYFSSILLSEYMVPMRGTEPIWVRAAIPYMGFTAESTAASVKTWTGDDKAIRNSTLEGSLALCPAFSTEVSCPVLVMRSAYMRTCRWLGPLSPISVLFSLLFFCRAASMPYSSMVSPIQDDTMVYGSMLSSSIAPKILLPFVLLAYILSTLTSFPWASTRCRICLSTFAFLLPGIPLFVLFITLSTTFTAIFSSVPIRVLLLRLQALSRTYMRILLGIPVAVFSTECMLYVLGCLPLTLLLLLSTLLLFIIMVVLFISKRIHQFAISSGGCTTGWFSRKSVIHSTSLAKSGYITFFFVLVYVSYNTCHCSINRSNVICSMLLPISCAYVLFVSTSGFFTRTSISEDCSASTGFALQISWGRTIPDLLVPPATDRWWESSIYCVKGSVTDCAARIPTASPYLLRLCVYCTLMWSRMALICSQVLFIVLSVASSMRICMRIREAARLRYTGMGVCTRSCMLLLYTYGRFLQNVLSIVYFCTILFSSKGSTPLAELSTMFFTMLATFTGTCLSSVCSCLQLQFSTFTKICRYLSLSFLWRANSSSNKGDCIPVYLYLSSSSWSDSMLVSNRTVSSWRASRPSSPYNCCTRRVSMETRRYYSTIQDCRPKIPLRLAYPVHVVDTALLFKSNLPFISPKIYSGEVWPAIYLLQMYPYACASRANLGYYTRVLPKENWGCMRCVLFSIWPMPAMLCIILGFVPLAPVATICKSPLVSGLLEFIFGFTILSGNLCAFSCNFSYKSCVVRPIRGMLSPCSSRLFISSDSSSSSLLFSWTSCCASGVTSMSAVDTVYPALRTYFRASCWVANIIFKACCGPYLREIWCYIPPEEPAPTAFLSRTPSMCSPLRICVQMSCLLYCMYGAYTSVYHVGARCYLLGVCLSTIHTTDLPSSRSVGEYLPKQGGSVWVVCNNPMACSLFITFFPMGVFVRVCKKLPTVESCTCPLSGPELFVEMYQFRTEQSTSASTRLMSLQGTQRFICSPSKSALYQAHALSFICNVQIFGFSRTTIRCTPMLLRSREGWRLQNATSPVSTSRYRMSPTSSLQSCLRPSMSCTDCVICLYTLVQPGYWRFPFTKYGIILLLLYCCTVSATCSVRAKEIRYPTSSRCRSVFPQMVDRLFDHTWLPSTDLRILPSLRGSLRMLEGAGRAPMSIPRFPVPPWVAVVETESNKKLYYSCCMVCILRSIFTGIFWPRTICMSFGISRFFRTRYCITLLLSCKLWGPVPIPNLLPGRMLLGGICMALCTSFSGWEFLLRPSFTTVSYVTREKISLLFCGYSLSILPCCSTQKVQYSSESLLFLRCITLQTYHCFPSVWLAAASICRLRLLWCSYLFTSTMGAPQLWHISLIHRRISAMQSGCSTGACICSIPGCPIHCLRWCVQVLHLYCCSVVPIRASYMPPSAGRVPSNILEMVSSISPCLLCSLSPAILYCTAAISAYPASIFLLNTX

Summary

Uniprot
ProteinModelPortal

Ontologies

Subcellular Location

From MSLVP
Capsid

Topology

Length:
1452
Number of predicted TMHs:
14
Exp number of AAs in TMHs:
423.86596
Exp number, first 60 AAs:
20.03743
Total prob of N-in:
0.16488
POSSIBLE N-term signal
sequence
outside
1  -  4
TMhelix
5  -  24
inside
25  -  96
TMhelix
97  -  119
outside
120  -  146
TMhelix
147  -  166
inside
167  -  177
TMhelix
178  -  200
outside
201  -  219
TMhelix
220  -  242
inside
243  -  248
TMhelix
249  -  271
outside
272  -  290
TMhelix
291  -  313
inside
314  -  325
TMhelix
326  -  348
outside
349  -  419
TMhelix
420  -  442
inside
443  -  468
TMhelix
469  -  491
outside
492  -  505
TMhelix
506  -  528
inside
529  -  686
TMhelix
687  -  709
outside
710  -  723
TMhelix
724  -  746
inside
747  -  911
TMhelix
912  -  934
outside
935  -  1452
 
 

Population Genetic Test Statistics

Pi
0.0278406
Theta
0.0375462
Tajima's D
-0.9158537
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018 Protein
AOO54451.1
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008 Protein
Protein
Protein
AOO54451.1
AOO54452.1
AOO54454.1
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014    
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985 Protein
QGM12741.1
South_Africa_2_2008 Protein
QGM12741.1
Zambia_LIV_1983 Protein
Protein
QGM12741.1
QGM12741.1
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