ASFVdb The African Swine Fever Virus Database
Strain
Ukraine_Kyiv_2014 (Region: Ukraine;  Strain: ASFV/Kyiv/2016/131;  Date: 2014)
Gene
QP509L
Description
Annotated in NCBI,  ASFV_Kyiv_2016_131_00198
GenBank Accession
Full name
ResIII domain-containing protein       + More
Putative ATP-dependent RNA helicase QP509L      
 

Sequence

CDS
ATGTTTAACATGGTTTACACGACGCGCCCCGTGTCGCTGCGGGCCCTCCCATGCGTTGAAACAGAATTTCCACTATTTAACTACCAGCAAGAAATGGTCGATAAGATTCATAAAAAGCTCCTGTCCCCCTATGGGCGCTTTTACCTACATCTAAATACCGGTTTGGGGAAAACGCGTATTGCGATCAGCATTATTCAAAAACTTTTGTACCCTACCCTGGTCATCGTGCCCACCAAGGCGATTCAAATACAGTGGATCGACGAGCTAACATTGCTCCTGCCCCACCTACGTGTAGCTGCTTACAATAATGCAGCGTGCAAGAAAAAGGACATGACGAGCAAAGAGTACGACGTCATCGTGGGAATCATTAATACCCTGCGCAAGAAGCCTGAGCAGTTCTTTGAGCCCTTTGGTCTAGTCGTGTTAGATGAGGCACATGAATTACACTCGCCGGAGAATTACAAAATTTTTGGAAAATACAACTTAGTCGGATATTAG
Protein
MFNMVYTTRPVSLRALPCVETEFPLFNYQQEMVDKIHKKLLSPYGRFYLHLNTGLGKTRIAISIIQKLLYPTLVIVPTKAIQIQWIDELTLLLPHLRVAAYNNAACKKKDMTSKEYDVIVGIINTLRKKPEQFFEPFGLVVLDEAHELHSPENYKIFGKYNLVGY

Summary

Catalytic Activity
ATP + H2O = ADP + H(+) + phosphate
Similarity
Belongs to the DEAD box helicase family. DEAH subfamily.
Keywords
ATP-binding   Complete proteome   Helicase   Hydrolase   Nucleotide-binding   Reference proteome  
Feature
chain  Putative ATP-dependent RNA helicase QP509L
EMBL
MN194591    QED21734.1    PXXM01000122    KAA3441327.1    AM712239    CAN10222.1    + More
FN557520    CBH29222.1    AM712240    CAN10471.1    FR682468    CBW46788.1    KM262844    KM262845    KM102979    KP055815    KX354450    AIY22313.1    AIY22471.1    AJZ77063.1    AKO62803.1    AOO54489.1    MG939583    MG939588    LS478113    AXZ95895.1    AXZ96178.1    SPS73545.1    U18466    AY261363    KM111294    AJL34135.1    AY261360    AY261366    KM111295    MH025916    MH025917    MH025918    MH025920    AJL34300.1    AXB49351.1    AXB49525.1    AXB49697.1    AXB50041.1    MH025919    AXB49868.1    M88275    AAA03223.1    X71982    X72953    AY261361    AOHX01000045    ELY42507.1    FTNR01000004    SIR88043.1    ARYL01000055    KDA00717.1    AOHY01000016    ELY49809.1    CP031305    QCC55434.1    CP024914    AUC62559.1    AAOF01000027    EAR20266.1    VTAW01000022    TYT61131.1    FNHL01000003    SDM80579.1    CP003943    AFY33519.1    CP000480    ABK70821.1    CP001663    AFP37680.1    AOMA01000014    EMA45750.1    FORO01000006    SFI82977.1    CP003377    AOIC01000089    PKKI01000009    AFZ71516.1    ELY66574.1    PLK21291.1    LGUC01000001    KPN30583.1    AOHW01000005    ELY45970.1    CP002988    AEN05309.1    FNLC01000002    SDQ91600.1    SESI01000001    TQQ81568.1    OBEJ01000002    SNZ12830.1    FOZS01000001    SFS50031.1    FNFE01000006    SDK73004.1    AOIS01000045    ELZ17352.1   
Pfam
PF04851   ResIII
PF18458   XPB_DRD
PF16203   ERCC3_RAD25_C
PF00271   Helicase_C
Interpro
IPR027417   P-loop_NTPase
IPR014001   Helicase_ATP-bd
IPR006935   Helicase/UvrB_N
IPR001650   Helicase_C
IPR040699   XPB_DRD
IPR032438   ERCC3_RAD25_C
SUPFAM
SSF52540   SSF52540
PDB
2FWR     E-value=1.2205e-07,     Score=135

Ontologies

KEGG

Subcellular Location

From MSLVP
Capsid

Topology

Length:
165
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.54039
Exp number, first 60 AAs:
0.03925
Total prob of N-in:
0.23475
outside
1  -  165
 
 

Population Genetic Test Statistics

Pi
0.0250616
Theta
0.0352706
Tajima's D
-0.8981883
CLR
0.125169
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971 Protein
AKO62803.1
China_AnhuiXCGQ_2018 Protein
AYW34093.1
China_ASFV-SY18_2018 Protein
AKO62803.1
Poland_Pol16_20186_o7_2016-2017 Protein
AXZ95895.1
Poland_Pol16_20538_o9_2016-2017 Protein
CAN10222.1
Poland_Pol16_20540_o10_2016-2017 Protein
CAN10222.1
Poland_Pol16_29413_o23_2016-2017 Protein
CAN10222.1
Poland_Pol17_03029_C201_2016-2017 Protein
CAN10222.1
Poland_Pol17_04461_C210_2016-2017 Protein
AXZ96178.1
Poland_Pol17_05838_C220_2016-2017 Protein
CAN10222.1
Poland_ASFV_POL_Podlaskie_2015 Protein
CAN10222.1
Uganda_R8_2015 Protein
AXB49351.1
Uganda_R7_2015 Protein
AXB49525.1
Uganda_R25_2015 Protein
AXB49697.1
Uganda_N10_2015 Protein
AXB49868.1
Uganda_R35_2015 Protein
AXB50041.1
Estonia_2014 Protein
SPS73545.1
Italy_26544_OG10_2010 Protein
AJZ77063.1
Italy_47_Ss_2008_2008 Protein
AOO54489.1
Portugal_OURT_88.3_1988 Protein
CAN10471.1
Spain_E75_1975 Protein
CBH29222.1
Russia_Georgia_2007 Protein
CBW46788.1
Kenya_Tk1_2005 Protein
AJL34135.1
Kenya_Bus_2006 Protein
AJL34300.1
Russia_Odintsovo_2014 Protein
CAN10222.1
Portugal_L60_1960 Protein
AIY22313.1
Portugal_NHV_1968 Protein
AIY22471.1
Russia_Kashino_2013 Protein
CAN10222.1
Benin_1997 Protein
Protein
CAN10222.1
CAN10222.1
South_Africa_KNP_Pretorisuskop_1996 Protein
CAN10222.1
South_Africa_MGR_Mkuzi_1979 Protein
CAN10222.1
Malawi_Lil_1983 Protein
CAN10222.1
Kenya_1950 Protein
CAN10222.1
Namibia_Warthog_1980 Protein
CAN10222.1
South_Africa_Warmbaths_1987 Protein
CAN10222.1
Malawi_Tengani_1962 Protein
CAN10222.1
China_HLJ_2018 Protein
QBH90610.1
China_LN_2018 Protein
QBH90795.1
China_wbBS01_2018 Protein
QDL88153.1
Ukraine_Kyiv_2014 Protein
Protein
QED21733.1
QED21734.1
Belgium_Etalle_wb_2018 Protein
QED90565.1
Lithuania_LT14_2014 Protein
QEY87928.1
South_Africa_1985 Protein
CAN10222.1
South_Africa_2_2008 Protein
CAN10222.1
Zambia_LIV_1983 Protein
CAN10222.1
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