Strain

Uganda_N10_2015 (Region: Uganda, Tororo district;  Strain: N10;  Date: 2015)

Gene

pK78R

Description

Annotated in NCBI,  gene expression: late

Location

MH025919.1(+):62527-62760

GenBank Accession

AXB49795.1

Full name

Structural DNA-binding protein p10      

CDS

ATGCCTACAAAAGCTGGCACAAAAAGTACCGCAAATAAAAAAACGACCAAGGGGCCCTCCAAATCTGGTTCTGCCAAAGGCCACACCGGCAAAACCCATGCTACGGCCCTGCATCAAGGGATGCTCTATAAAGATATGGTAAACATTGCCAAATCTAAGGGCATTCCGATTTACCAGAATGGATCACGTCTTACTAAAAGTGAATTGGAGAAAAAAATTAAACGGTCAAAATGA

Protein

MPTKAGTKSTANKKTTKGPSKSGSAKGHTGKTHATALHQGMLYKDMVNIAKSKGIPIYQNGSRLTKSELEKKIKRSK

Function

May play a role in genome packaging through direct interaction with viral DNA. Binds to ssDNA and dsDNA with the same apparent affinity in vitro (By similarity).
May play a role in genome packaging through direct interaction with viral DNA. Binds to ssDNA and dsDNA with the same apparent affinity in vitro.

Similarity

Belongs to the asfivirus P10 family.

Keywords

Complete proteome   DNA-binding   Virion   Direct protein sequencing   Reference proteome  

Feature

chain  Structural DNA-binding protein p10

Uniprot

A0A0C5BC68   Q0QMM8   A0A0C5BCM1   P0C9X7   A9JKZ5   A9JLQ6   + More
E0WMI7   A0A0A1E0N3   Q89769   P0C9X8   P0C9Y0   P0C9X9   D4I5N7  

Pubmed

25645905    18243588    18198370    21470447    25406173    26618713    + More
8503790    11831707   

EMBL

KM111294    MH025916    MH025917    MH025918    MH025919    MH025920    + More
AJL34063.1    AXB49278.1    AXB49452.1    AXB49624.1    AXB49795.1    AXB49968.1    DQ275352    ABB84248.1    KM111295    AJL34228.1    AY261360    AM712239    CAN10148.1    AM712240    CAN10397.1    FR682468    CBW46715.1    KM262844    KM262845    KM102979    KP055815    KX354450    LS478113    AIY22240.1    AIY22399.1    AJZ77184.1    AKO62731.1    AOO54380.1    SPS73472.1    X68563    U18466    AY261361    AY261366    AY261363    FN557520    CBH29150.1   

Proteomes

UP000105860    UP000101566    UP000000861    UP000130745    UP000108903    UP000141072    + More
UP000110401    UP000117635    UP000142390    UP000241813    UP000266411    UP000000624    UP000000860    UP000000858    UP000000859    UP000101090   

ProteinModelPortal

A0A0C5BC68   Q0QMM8   A0A0C5BCM1   P0C9X7   A9JKZ5   A9JLQ6   + More
E0WMI7   A0A0A1E0N3   Q89769   P0C9X8   P0C9Y0   P0C9X9   D4I5N7  

KEGG

vg:22220431    

GO

GO:0019012  C:virion
GO:0003677  F:DNA binding

From MSLVP

Host nucleus > host nucleolus. Host cytoplasm. Secreted.

From Uniprot

Virion  

Length:

77

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00026

Exp number, first 60 AAs:

0.00026

Total prob of N-in:

0.70828

inside

1  -  77

 

 

Pi

0.040519

Theta

0.0537334

Tajima's D

-0.8539217

CLR

0

Interpretation

No evidence of Selection