Strain
Namibia_Warthog_1980
(Region: Namibia; Strain: Warthog; Date: 1980)
Gene
Structural protein p10
Description
Annoated by sequence mapping,
DNA-binding protein
Location
GenBank Accession
Sequence
CDS
ATGCCTACAAAAGCTGGCACAAAAAGTACCGCAAATAAAAAAACAACGAAGGGTTCCTCCAAATCTGGTTCTGCCAGAGGCCACACCGGCAAAACCCATGCTCCTCCGTCCATGCATTCCGGGATGCTCTATAAAGATATGGTAAATATTGCTAGATCTAAAGGCATTCCGATTTATCAGAATGGAACGCGTCTTACTAAAAGTGAATTGGAGAAAAAAATTAAACGGTCAAAATGA
Protein
MPTKAGTKSTANKKTTKGSSKSGSARGHTGKTHAPPSMHSGMLYKDMVNIARSKGIPIYQNGTRLTKSELEKKIKRSKX
Summary
Uniprot
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.
Topology
Length:
79
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00033
Exp number, first 60 AAs:
0.00028
Total prob of N-in:
0.69732
inside
1 - 79
Population Genetic Test Statistics
Pi
0.0431991
Theta
0.0535369
Tajima's D
-0.7339734
CLR
0
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 |
Protein |
AKO62731.1 |
|
| China_AnhuiXCGQ_2018 |
Protein |
AYW34021.1 |
|
| China_ASFV-SY18_2018 |
Protein |
AKO62731.1 |
|
| Poland_Pol16_20186_o7_2016-2017 |
Protein |
CAN10148.1 |
|
| Poland_Pol16_20538_o9_2016-2017 |
Protein |
CAN10148.1 |
|
| Poland_Pol16_20540_o10_2016-2017 |
Protein |
CAN10148.1 |
|
| Poland_Pol16_29413_o23_2016-2017 |
Protein |
CAN10148.1 |
|
| Poland_Pol17_03029_C201_2016-2017 |
Protein |
CAN10148.1 |
|
| Poland_Pol17_04461_C210_2016-2017 |
Protein |
CAN10148.1 |
|
| Poland_Pol17_05838_C220_2016-2017 |
Protein |
CAN10148.1 |
|
| Poland_ASFV_POL_Podlaskie_2015 |
Protein |
CAN10148.1 |
|
| Uganda_R8_2015 |
Protein |
AXB49278.1 |
|
| Uganda_R7_2015 |
Protein |
AXB49452.1 |
|
| Uganda_R25_2015 |
Protein |
AXB49624.1 |
|
| Uganda_N10_2015 |
Protein |
AXB49795.1 |
|
| Uganda_R35_2015 |
Protein |
AXB49968.1 |
|
| Estonia_2014 |
Protein |
SPS73472.1 |
|
| Italy_26544_OG10_2010 |
Protein |
AJZ77184.1 |
|
| Italy_47_Ss_2008_2008 |
Protein |
AOO54380.1 |
|
| Portugal_OURT_88.3_1988 |
Protein |
CAN10397.1 |
|
| Spain_E75_1975 |
Protein |
CBH29150.1 |
|
| Russia_Georgia_2007 |
Protein |
CBW46715.1 |
|
| Kenya_Tk1_2005 |
Protein |
AJL34063.1 |
|
| Kenya_Bus_2006 |
Protein |
AJL34228.1 |
|
| Russia_Odintsovo_2014 |
Protein |
CAN10148.1 |
|
| Portugal_L60_1960 |
Protein |
AIY22240.1 |
|
| Portugal_NHV_1968 |
Protein |
AIY22399.1 |
|
| Russia_Kashino_2013 |
Protein |
CAN10148.1 |
|
| Benin_1997 |
Protein Protein |
CAN10148.1 CAN10148.1 |
|
| South_Africa_KNP_Pretorisuskop_1996 |
Protein |
CAN10148.1 |
|
| South_Africa_MGR_Mkuzi_1979 |
Protein |
CAN10148.1 |
|
| Malawi_Lil_1983 |
Protein |
CAN10148.1 |
|
| Kenya_1950 |
Protein |
CAN10148.1 |
|
| Namibia_Warthog_1980 |
Protein |
CAN10148.1 |
|
| South_Africa_Warmbaths_1987 |
Protein |
CAN10148.1 |
|
| Malawi_Tengani_1962 |
Protein |
CAN10148.1 |
|
| China_HLJ_2018 |
Protein |
QBH90537.1 |
|
| China_LN_2018 |
Protein |
QBH90722.1 |
|
| China_wbBS01_2018 |
Protein |
QDL88080.1 |
|
| Ukraine_Kyiv_2014 |
Protein |
QED21608.1 |
|
| Belgium_Etalle_wb_2018 |
Protein |
QED90492.1 |
|
| Lithuania_LT14_2014 |
Protein |
QEY87855.1 |
|
| South_Africa_1985 |
Protein |
QGM12904.1 |
|
| South_Africa_2_2008 |
Protein |
QGM12830.1 |
|
| Zambia_LIV_1983 |
Protein |
QGM12711.1 |
