Strain
Uganda_R25_2015
(Region: Uganda, Tororo district; Strain: R25; Date: 2015)
Gene
p110-15R
Description
Annotated in NCBI,
I12R
Location
GenBank Accession
Sequence
CDS
ATGGGAGTTATGTTTGCCCAGCAGATCATACAATTATTTATTTCGCAGGTAATCTCAGTCTTATATACATATAATAAAATACATTACTTACAGCAAATTATTAAACCTCCTAGCAAGGAGCCTGGATACTGGCGTACCTATGCAAACCATCACAGATTCTGTTGGGACTGTCAAGGTGGCATCTATAGGAACAAGGTATTTAAAAATCATCTTTCTACGACTAAGGACCTTAATATAGATAAATATTTGATGGGTTTATTTATCTGCGCAAAAAATGCACCCACCAAATAA
Protein
MGVMFAQQIIQLFISQVISVLYTYNKIHYLQQIIKPPSKEPGYWRTYANHHRFCWDCQGGIYRNKVFKNHLSTTKDLNIDKYLMGLFICAKNAPTK
Summary
Uniprot
EMBL
Proteomes
Pfam
PF01639
v110
Interpro
IPR004848
V110_vir
ProteinModelPortal
PDB
5C2W
E-value=4.19763,
Score=62
Ontologies
Subcellular Location
From MSLVP
Single-Pass Membrane
Topology
Length:
96
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
6.36309
Exp number, first 60 AAs:
6.36202
Total prob of N-in:
0.14763
outside
1 - 96
Population Genetic Test Statistics
Pi
0.2044815
Theta
0.1804877
Tajima's D
0.5443621
CLR
1.061085
Interpretation
Possibly Balancing Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 | |||
| China_ASFV-SY18_2018 | |||
| Poland_Pol16_20186_o7_2016-2017 | |||
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 | |||
| Poland_Pol17_03029_C201_2016-2017 | |||
| Poland_Pol17_04461_C210_2016-2017 | |||
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 |
Protein |
AXB49382.1 |
|
| Uganda_R7_2015 |
Protein |
AXB49556.1 |
|
| Uganda_R25_2015 |
Protein |
AXB49728.1 |
|
| Uganda_N10_2015 |
Protein |
AXB49899.1 |
|
| Uganda_R35_2015 |
Protein |
AXB50072.1 |
|
| Estonia_2014 | |||
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 | |||
| Portugal_OURT_88.3_1988 | |||
| Spain_E75_1975 | |||
| Russia_Georgia_2007 | |||
| Kenya_Tk1_2005 |
Protein |
AJL34167.1 |
|
| Kenya_Bus_2006 |
Protein Protein |
AJL34330.1 AJL34330.1 |
|
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 | |||
| Russia_Kashino_2013 | |||
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 | |||
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 | |||
| China_LN_2018 | |||
| China_wbBS01_2018 | |||
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 | |||
| Lithuania_LT14_2014 | |||
| South_Africa_1985 | |||
| South_Africa_2_2008 | |||
| Zambia_LIV_1983 |
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Any Comments and suggestions mail to:
zhuzl@cqu.edu.cn,
mg@cau.edu.cn
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