Strain
Malawi_Tengani_1962
(Region: Malawi, Tengani, Nsanje District; Strain: Tengani 62; Date: 1962)
Gene
KP177R
Description
With frameshift mutation but translatable,
KP177R
Location
GenBank Accession
Sequence
CDS
ATGTTTAATATTAAAATGACAATTTCTACATTGCTTATTGCTCTTATTATACTACTTATTATTATTTTAGTAGTGTTTTTATACTATAAGAAACAACAACCACCGAAAAAGGTCTGTAAAGTAGATAAAGATTGTGGTAGTGGAGAGCATTGTGTTCGTGGATCATGTAGCTCATTGAGCTGCTTAGACGCTGTAAAAACGGACAAACGAAATATTATGATAGATTCTAAGATTTCCTCATGCGAATTCACTCCCAATTTTTACCGTTTTACGGATACAGCTGCTGATGAGCAGCAAGAATTTGGAAAAACACGGCATTCTATAAAAATAACTCCATCTCCGAGTGAATCCCATAGCCCCCAAGAGGTGTGTGAAAGATATTGTTCATGGGGAACAGATGACTGTACAGGTTGGGAATATGATGGTAATGAAAAGGAGGGAACATGTTATATATATAATAATCCACATCATCCAGTTCTTAAATATGGTAAGGATCACGTTATAGCCTTACCCAGAAATCATAAACATGCATAA
Protein
MFNIKMTISTLLIALIILLIIILVVFLYYKKQQPPKKVCKVDKDCGSGEHCVRGSCSSLSCLDAVKTDKRNIMIDSKISSCEFTPNFYRFTDTAADEQQEFGKTRHSIKITPSPSESHSPQEVCERYCSWGTDDCTGWEYDGNEKEGTCYIYNNPHHPVLKYGKDHVIALPRNHKHAX
Summary
Pubmed
Proteomes
Ontologies
Subcellular Location
From MSLVP
Single-Pass Membrane
Topology
Length:
178
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
21.93171
Exp number, first 60 AAs:
21.93171
Total prob of N-in:
0.45447
POSSIBLE N-term signal
sequence
inside
1 - 6
TMhelix
7 - 29
outside
30 - 178
Population Genetic Test Statistics
Pi
0.0601693
Theta
0.1241841
Tajima's D
-1.5526288
CLR
2.774042
Interpretation
Possibly Positive selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 |
Protein |
AKO62686.1 |
|
| China_AnhuiXCGQ_2018 |
Protein |
AYW33955.1 |
|
| China_ASFV-SY18_2018 |
Protein |
AKO62686.1 |
|
| Poland_Pol16_20186_o7_2016-2017 |
Protein |
AXZ95770.1 |
|
| Poland_Pol16_20538_o9_2016-2017 |
Protein |
CBW46645.1 |
|
| Poland_Pol16_20540_o10_2016-2017 |
Protein |
AXZ95948.1 |
|
| Poland_Pol16_29413_o23_2016-2017 |
Protein |
AXZ95950.1 |
|
| Poland_Pol17_03029_C201_2016-2017 |
Protein |
AXZ95967.1 |
|
| Poland_Pol17_04461_C210_2016-2017 |
Protein |
AXZ96062.1 |
|
| Poland_Pol17_05838_C220_2016-2017 |
Protein |
AXZ96222.1 |
|
| Poland_ASFV_POL_Podlaskie_2015 |
Protein |
CBW46645.1 |
|
| Uganda_R8_2015 |
Protein |
AXB49222.1 |
|
| Uganda_R7_2015 |
Protein |
AXB49395.1 |
|
| Uganda_R25_2015 |
Protein |
AXB49569.1 |
|
| Uganda_N10_2015 |
Protein |
AXB49741.1 |
|
| Uganda_R35_2015 |
Protein |
AXB49912.1 |
|
| Estonia_2014 | |||
| Italy_26544_OG10_2010 |
Protein |
AJZ77142.1 |
|
| Italy_47_Ss_2008_2008 |
Protein |
AOO54311.1 |
|
| Portugal_OURT_88.3_1988 |
Protein |
CAN10352.1 |
|
| Spain_E75_1975 |
Protein |
CBH29101.1 |
|
| Russia_Georgia_2007 |
Protein Protein |
CBW46645.1 CBW46645.1 |
|
| Kenya_Tk1_2005 |
Protein |
AJL34008.1 |
|
| Kenya_Bus_2006 |
Protein |
AJL34173.1 |
|
| Russia_Odintsovo_2014 |
Protein |
CBW46645.1 |
|
| Portugal_L60_1960 |
Protein |
AIY22191.1 |
|
| Portugal_NHV_1968 |
Protein |
AIY22354.1 |
|
| Russia_Kashino_2013 |
Protein |
CBW46645.1 |
|
| Benin_1997 |
Protein |
CAN10100.1 |
|
| South_Africa_KNP_Pretorisuskop_1996 |
Protein |
CBW46645.1 |
|
| South_Africa_MGR_Mkuzi_1979 |
Protein |
CBW46645.1 |
|
| Malawi_Lil_1983 |
Protein |
CBW46645.1 |
|
| Kenya_1950 |
Protein |
CBW46645.1 |
|
| Namibia_Warthog_1980 |
Protein |
CBW46645.1 |
|
| South_Africa_Warmbaths_1987 |
Protein |
CBW46645.1 |
|
| Malawi_Tengani_1962 |
Protein |
CBW46645.1 |
|
| China_HLJ_2018 |
Protein |
QBH90468.1 |
|
| China_LN_2018 |
Protein |
QBH90653.1 |
|
| China_wbBS01_2018 |
Protein Protein |
CBW46645.1 QDL88012.1 |
|
| Ukraine_Kyiv_2014 |
Protein |
QED21542.1 |
|
| Belgium_Etalle_wb_2018 |
Protein |
QED90426.1 |
|
| Lithuania_LT14_2014 |
Protein |
QEY87785.1 |
|
| South_Africa_1985 | |||
| South_Africa_2_2008 | |||
| Zambia_LIV_1983 |
