ASFVdb The African Swine Fever Virus Database
Strain
South_Africa_1985 (Region: South Africa;  Strain: SPEC_57;  Date: 1985)
Gene
pH240R
Description
Annotated in NCBI,  H240R
GenBank Accession
 

Sequence

CDS
ATGGCTGCAATGCAACAAGAGCCGCGCCAAAGACGGCCAGCAAAAAAGAGCATCAATACTGCCTGCTACACTCCCAGGAAAAGCGTGTTGGCCATTATCCCTTTTCATTTGTATTACAGCCTTATGGGCAAACAGGCGCAAATATCATACGAGTACAGGGCTCGCTTACCCATGTTATCAAAATGTCAGTATTTCCATTTATGTTTCCTTTTCCTTTACAAAAAATTCATATACATGTTTTTATTGGTGGACGCGTTTATTTATTTTTTATGGAACTGGACGTGCAAGCAATTTCTGTTGTATATGGAATGCAATACCACTTCGAGTTTATGGTTGTCCCTGTATGCTCCAACCAAGTACAGCTTCTTCCCGTGTATATCAAATATATATTTACATATGCTATACCGGAGGTGCAATACCTTACCCCTATCTTTTATGTTCTTTCGGGGCCGCTATATTTCCCATTACATACTCTTTCGGTCCATGTGGATACCCTCACCAATCATATACAGCTTCCTATCCAAAACCATATCCTATCAACGGGTGTTCGTGTTTTTATTTCTGGATATATACACCTGCAAACGATTGTATTGTGTACAAATATCAAGATTTTTATCAAATGTATACCGCCGCTTTCATCCGAAAAAATACAACTATATATACCAAAAAATCGAATCAGAATTCCACTATACTTTATATCTTTACAAAACGTCTAAGTATTATCATTTTTATACTCTACTCCTACTTCCGAAATACGCTGTATTTCTTTTTTATGCCCTTTATACCAAGGATGCGACACAAGACTCTTACAGGAAAGCCGTTTATTTTCATTATTTGTTATACAATCCGTGTTATACTGCTTTCCCGTCTCTGCAATGTTCTCGGGAATATATTTTTCCCCTTTCAGGATATCATTTATATACAAATTTTCTGCACGAAATCTACAAAGATTATCCGCGACCATACCTATCGTCCACACAGTTACAGGAAGCTGGTACTATTATCCATATTATTACAATTCTGGACACACGTATTCCCATGTTCCAAACATATTATATTGGGGACGGGTTTCGTCTATTCTATCAGCGCTTCCAAAGTCAATGTCCTTTATGTTCTTTTGGTTTATGTCTATATTATGGTTCTCATCCTTATTATCCCCATGGATACAGCCCTTCTCATATATGTTTTGTATATTACGAATATGCTGGAATATTATTTTTTTGGCTTCGGTTTCCTCAAGTTTTTTACAGTATTGTTATTGCAGTACGTCAACACTATTTGGAATATATTCTATGTTTACTATATGTTACATACCATTTTCGGTATATTCGATATGCTTATTATCACCGGGAGTATCTTGCAGGGCTTTCAACACGATGTCTTCATTTCCTGGAATTTCTTTTTTACAAACGTACTTATATATATTGGGTTGCCCTACTTGTTGTCCCAAAAAGACGTTATTTCTACCACCCTCAAACATGGGTCTCGTCGCAATGCAATACATGTGCTGCGTTGTGGAGATCCTTTCCACCTTTGCTGTACGATATACCGCATATTGTGCCTGTGGGTTTTTTATCATTTTTTTATGCTGTTGTTCCGGCCTGGACATGTTTTAATACCTTTATATATACAGGGTTACAAGGTTTATTTTCAATATATGCCTTATTGTTGGGATTATATTCGTACAAGGTATACCCTATTCCTACTTCTTTGTTTTTTTGGTACAAAAACTGTTTGCCCTCGTACGATATGCTATACGCTTTTACTTCGGCTTTTACAAGCGGTTGGCAGGGATTGGGCAAACGTATATCGCGTTCAAAGTTTTCATGCAAAAGCAAAGCATTTGTGGGCTGTCACATCAGACAGCCGCTTTCGCCGTTGCAGGCACATTCAATGGCCGCCCTTTTTACTATATCGCGGAAAGCAGAAGTACGATGGCTCTTTTCAAGCCCCCTTTCATGCAAACGCTCATCAATCGTTTTTTGTTCCTGTCTGCCTTCGGGAATACTATACAACATTTTTTGTTTACCCACCGCGATGTACAAAAAAGGCTGTACGGTTTTCTCCTCGGGCGGTACCGCATCGTGGCTACCAATGCGTATATTGCGCGCCTTCACTTGTTCCTCTCGGGCCTTATCCCAGTACGGCTCCAGGATATGTACCTGCCGCCCGTATTTGCGATCCAATCCCTCAGCCCCCGTTTTACAGACGAGTACAATTTTATTATCCTCTCCGTGTATATTCAGCGGCGAATTCCAAAGCTGCTGGATCATGTCGCGCTCTTTGGATACAATTTTCCCTGTATTATGCGTATATCGTGTTATTTTGGAGGACAGGACTATCGTACGGGTCGGTCCATCTTCCGCAAAGTTTTTCACCATATGTTCTTTCCCATCCTTATGCAGAAGGATGGTGTTGTGCCCTTCTTCCAATACCTTTACGGGCTGCAGGCACTGGTACCCCTCTATTTCTACAAAGCGGGCCACGACGTGCAGGCCCAATTCCACAAACTGTGTGTATATGTGCACAGGGCCCGGAGACGTTTTATTATTTTTTATCATGCAAACTATTTTGGGACTACAATTTTCTGTGCAGGCCTCTTTGGGCAGCTGCTGTACAGCCTCTGTTATTTTTTCATCCTCCTTTACTGTTACCATTTCGGACGCGAAGATGCTGTTCATACGGGAACGCACATACTACGAGGAGCCTGTCTCTTGCTCCGATCCTGGCAGGCAGAGGGCGGCGGCATTTATTTTTTCATACATTCCTGTGCTGGCGTGCTTTTCCGCGTTTTCAACGTCTCGGGCCAGCAGATATTGCCTATACTGCTCGGGTGTCATTTCAACCTTTTCTATATTACGAGGAAGCTCTGTGGGGAATACCTTGTTGTGCTCATTCTGGTTTCCAGCGTACCTTATCATCCCCACTACGCGGTTTACTACTTTGTCCGCATTTACAGGGCTATTCGTTGTTTTATTATCATACGCGGTGTACAATCTTTCATACTGCAGAGGTATTACGATTCGCCCGCTTACCATATTACAACAGGGCACCATTTCAAAGGGGTCCTTCGAACACGGGGTGCCTGTTACAAACAGAATACGAATATTTTTACCTTGCATATTATTATTGTACAGCTGGCGGGCATTTGTTTTATCATTGGCGCTATTGTTATTTCCTCTACAGAGGTTGTGTGCCTCGTCAACGATGTGCAGGCATCCGTTTACGGACCCTCCCGCCTTTATGTTCTGCTGCCCCATGTTGTATGCGTCTACGGACACAAACCTACAGCGCCGCGAGATTTTTTGTACCTCTTTGGAGTGTTCCGTCGTTTCCGGATATACAAGTTTACTATGCTTTACCAAAGACTGTTGGAAGTTTGTGTGCAACGACTTGGGTGCTATCAGAATCGGGTTGTATATATGTGCAAGTGCGATGGCAAGCGACAGGCTCAAAATGGTTTTCCCCATGCCCATCTGGTGTTACATGTGGAGGCCCCGTGTGTTTTCCCCCTGGCCTATCCCAAATTTACGATCCGAAAAGGCGGTGTATATTACAAACTGGTACTATTTCAGGGCTCGTGCAAAGCGGGCAGTGTGTGTGGTGTCTTTGCTTTCCTGCAGCTCTTTATATTTTTCAAATACCTCTTTTACGTATGCTTCTGTTTGGACGGGGAAGGAGGTGTTGTTGTGCACGCAAGACATGACTCGTTATATGGATCCCATATTACAACTTCATTACAAGAATACGGCTGCTGTTATCTGGCGCTGCACTTACAAATGGGGTACCCCTTTTTCTTGTATATCCGGTGCCTGTCGTACACCTGGCTACAAAGCGGGCTTACTGTATCTTTATTGTCCACGACGATGCGTACCTTTTTTTCATCCGATCCCTGCCGGGTATTACGTCCCAAGATTTGCTCCATGTTGTTTCTGCGGGGCGTTGCCATGTTGTTCGATGTCATATGCTTGCAGGAAATGCCTCTCCGCCCGTACCCATACGTCAGCAAGATATTGGAAGCGCTGTGTGCCTGCGAAAGAGCGGTATTTGCAACCCCGCCGCATACGAGCGCCACCTCCGGAACGATATTTTGTACATCTTTGTATTCTTTGGAAAGCGCCTGTTACAAAATTTCTACAAGTTTACGAAATTCCACGAAAATGTTGTTGCCATACGGCTCATCGGTCCCCCATTTGTGTGGTTCAGCGGTATGCAGGGAGTACAGCCGCTTTGCCTCATTTACGACAAGCTGTATACGCGAAGGATCTTGCAGTACTTTATCAATGGTGGCAATGGCCGATACCTTTTCATTATTACACACAGGGCTGTCAAAGTCAGGATGTCCCTGTTATTCGATTTCCCTCACGTACCCGGAAAAGGTTGTGGTGGGACTTACAGTCCTCTGGGGCTGTCCTACATGGTGTATATTATTCTTGTCCATACCATCGGGCCGGTCCAGGGGTGTACCGGACAGTCCTATTATCCGACTCAGTTGTATTTTCCAAAAAATTTTGTATTTTTCCGGCGAGTGTATTTCATGTGCCTCATCTATCACGACTACACCGAAGGGCTCAAAGAACTGCTCAGGCTTCTTGCGCAGGGTATTATTGTTTCCCACGATGTCGTCGTACTCTTTACTCGTCATGTCCTTTTTCTTGCACGCTGCATTATTGTATGCAGCTACACGTACGTGGGGCAGGAGCAATGTTACCTCGTCGATCCACTGTACTTGTATCGCCTTGGTGGGCACGATGTCTACGGTACGGTACAAAAGTTTTTGTATATTACTGTTCGCAATACGCGTTTTCCCCAAACCGGTATTTACATGTACGTACAAGCGCCCATACGGGGACAGGAGCTTTTTATGTATCTTATCGACCATTTCTTGCTGGTACTTATATACTGGAAATTCTGTTTCAACGCATGGGAGGGCCCGCAGCGACACGGGGCGCGCCGTGTATACCATGTTATACATTTCAAACTGCTTTCGCAGCAATATGGGAAAATATATGTATTCCCCCTGCAGCGTGCAGGCAGTTTCCTGTCTTATGGCTATGTGCTTTGGCTGCCCAGGTATTGCCCGCGCCGTATCGGTGTGCGCCTTACGAAGGCGCCCGAAATCATGTTGTATTTTACTTTGTACCCTCTTATATTTTATTCCTATTCCAGCAAAGGATATAA
Protein
MAAMQQEPRQRRPAKKSINTACYTPRKSVLAIIPFHLYYSLMGKQAQISYEYRARLPMLSKCQYFHLCFLFLYKKFIYMFLLVDAFIYFLWNWTCKQFLLYMECNTTSSLWLSLYAPTKYSFFPCISNIYLHMLYRRCNTLPLSFMFFRGRYISHYILFRSMWIPSPIIYSFLSKTISYQRVFVFLFLDIYTCKRLYCVQISRFLSNVYRRFHPKKYNYIYQKIESEFHYTLYLYKTSKYYHFYTLLLLPKYAVFLFYALYTKDATQDSYRKAVYFHYLLYNPCYTAFPSLQCSREYIFPLSGYHLYTNFLHEIYKDYPRPYLSSTQLQEAGTIIHIITILDTRIPMFQTYYIGDGFRLFYQRFQSQCPLCSFGLCLYYGSHPYYPHGYSPSHICFVYYEYAGILFFWLRFPQVFYSIVIAVRQHYLEYILCLLYVTYHFRYIRYAYYHREYLAGLSTRCLHFLEFLFYKRTYIYWVALLVVPKRRYFYHPQTWVSSQCNTCAALWRSFPPLLYDIPHIVPVGFLSFFYAVVPAWTCFNTFIYTGLQGLFSIYALLLGLYSYKVYPIPTSLFFWYKNCLPSYDMLYAFTSAFTSGWQGLGKRISRSKFSCKSKAFVGCHIRQPLSPLQAHSMAALFTISRKAEVRWLFSSPLSCKRSSIVFCSCLPSGILYNIFCLPTAMYKKGCTVFSSGGTASWLPMRILRAFTCSSRALSQYGSRICTCRPYLRSNPSAPVLQTSTILLSSPCIFSGEFQSCWIMSRSLDTIFPVLCVYRVILEDRTIVRVGPSSAKFFTICSFPSLCRRMVLCPSSNTFTGCRHWYPSISTKRATTCRPNSTNCVYMCTGPGDVLLFFIMQTILGLQFSVQASLGSCCTASVIFSSSFTVTISDAKMLFIRERTYYEEPVSCSDPGRQRAAAFIFSYIPVLACFSAFSTSRASRYCLYCSGVISTFSILRGSSVGNTLLCSFWFPAYLIIPTTRFTTLSAFTGLFVVLLSYAVYNLSYCRGITIRPLTILQQGTISKGSFEHGVPVTNRIRIFLPCILLLYSWRAFVLSLALLLFPLQRLCASSTMCRHPFTDPPAFMFCCPMLYASTDTNLQRREIFCTSLECSVVSGYTSLLCFTKDCWKFVCNDLGAIRIGLYICASAMASDRLKMVFPMPIWCYMWRPRVFSPWPIPNLRSEKAVYITNWYYFRARAKRAVCVVSLLSCSSLYFSNTSFTYASVWTGKEVLLCTQDMTRYMDPILQLHYKNTAAVIWRCTYKWGTPFSCISGACRTPGYKAGLLYLYCPRRCVPFFHPIPAGYYVPRFAPCCFCGALPCCSMSYACRKCLSARTHTSARYWKRCVPAKERYLQPRRIRAPPPERYFVHLCILWKAPVTKFLQVYEIPRKCCCHTAHRSPICVVQRYAGSTAALPHLRQAVYAKDLAVLYQWWQWPIPFHYYTQGCQSQDVPVIRFPSRTRKRLWWDLQSSGAVLHGVYYSCPYHRAGPGVYRTVLLSDSVVFSKKFCIFPASVFHVPHLSRLHRRAQRTAQASCAGYYCFPRCRRTLYSSCPFSCTLHYCMQLHVRGAGAMLPRRSTVLVSPWWARCLRYGTKVFVYYCSQYAFSPNRYLHVRTSAHTGTGAFYVSYRPFLAGTYILEILFQRMGGPAATRGAPCIPCYTFQTAFAAIWENICIPPAACRQFPVLWLCALAAQVLPAPYRCAPYEGARNHVVFYFVPSYILFLFQQRIX

Summary

Uniprot
ProteinModelPortal

Ontologies

Subcellular Location

From MSLVP
Capsid

Topology

Length:
1727
Number of predicted TMHs:
15
Exp number of AAs in TMHs:
336.780319999999
Exp number, first 60 AAs:
1.15051
Total prob of N-in:
0.97114
Length:
1726
Number of predicted TMHs:
15
Exp number of AAs in TMHs:
335.405759999999
Exp number, first 60 AAs:
1.15051
Total prob of N-in:
0.97114
inside
1  -  66
TMhelix
67  -  89
outside
90  -  108
TMhelix
109  -  131
inside
132  -  151
TMhelix
152  -  174
outside
175  -  239
TMhelix
240  -  262
inside
263  -  393
TMhelix
394  -  411
outside
412  -  425
TMhelix
426  -  448
inside
449  -  459
TMhelix
460  -  482
outside
483  -  518
TMhelix
519  -  541
inside
542  -  552
TMhelix
553  -  575
outside
576  -  656
TMhelix
657  -  676
inside
677  -  835
TMhelix
836  -  858
outside
859  -  913
TMhelix
914  -  931
inside
932  -  951
TMhelix
952  -  974
outside
975  -  978
TMhelix
979  -  1001
inside
1002  -  1035
TMhelix
1036  -  1058
outside
1059  -  1727
inside
1  -  66
TMhelix
67  -  89
outside
90  -  108
TMhelix
109  -  131
inside
132  -  151
TMhelix
152  -  174
outside
175  -  239
TMhelix
240  -  262
inside
263  -  393
TMhelix
394  -  411
outside
412  -  425
TMhelix
426  -  448
inside
449  -  459
TMhelix
460  -  482
outside
483  -  518
TMhelix
519  -  541
inside
542  -  552
TMhelix
553  -  575
outside
576  -  656
TMhelix
657  -  676
inside
677  -  835
TMhelix
836  -  858
outside
859  -  913
TMhelix
914  -  931
inside
932  -  951
TMhelix
952  -  974
outside
975  -  978
TMhelix
979  -  1001
inside
1002  -  1035
TMhelix
1036  -  1058
outside
1059  -  1726
 
 

Population Genetic Test Statistics

Pi
0.0294487
Theta
0.0432361
Tajima's D
-0.9935122
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014    
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985 Protein
Protein
QGM12938.1
QGM12938.1
South_Africa_2_2008 Protein
QGM12938.1
Zambia_LIV_1983    
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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