Strain
South_Africa_1985
(Region: South Africa; Strain: SPEC_57; Date: 1985)
Gene
pH240R
Description
Annotated in NCBI,
H240R
Location
GenBank Accession
Sequence
CDS
ATGGCTGCAATGCAACAAGAGCCGCGCCAAAGACGGCCAGCAAAAAAGAGCATCAATACTGCCTGCTACACTCCCAGGAAAAGCGTGTTGGCCATTATCCCTTTTCATTTGTATTACAGCCTTATGGGCAAACAGGCGCAAATATCATACGAGTACAGGGCTCGCTTACCCATGTTATCAAAATGTCAGTATTTCCATTTATGTTTCCTTTTCCTTTACAAAAAATTCATATACATGTTTTTATTGGTGGACGCGTTTATTTATTTTTTATGGAACTGGACGTGCAAGCAATTTCTGTTGTATATGGAATGCAATACCACTTCGAGTTTATGGTTGTCCCTGTATGCTCCAACCAAGTACAGCTTCTTCCCGTGTATATCAAATATATATTTACATATGCTATACCGGAGGTGCAATACCTTACCCCTATCTTTTATGTTCTTTCGGGGCCGCTATATTTCCCATTACATACTCTTTCGGTCCATGTGGATACCCTCACCAATCATATACAGCTTCCTATCCAAAACCATATCCTATCAACGGGTGTTCGTGTTTTTATTTCTGGATATATACACCTGCAAACGATTGTATTGTGTACAAATATCAAGATTTTTATCAAATGTATACCGCCGCTTTCATCCGAAAAAATACAACTATATATACCAAAAAATCGAATCAGAATTCCACTATACTTTATATCTTTACAAAACGTCTAAGTATTATCATTTTTATACTCTACTCCTACTTCCGAAATACGCTGTATTTCTTTTTTATGCCCTTTATACCAAGGATGCGACACAAGACTCTTACAGGAAAGCCGTTTATTTTCATTATTTGTTATACAATCCGTGTTATACTGCTTTCCCGTCTCTGCAATGTTCTCGGGAATATATTTTTCCCCTTTCAGGATATCATTTATATACAAATTTTCTGCACGAAATCTACAAAGATTATCCGCGACCATACCTATCGTCCACACAGTTACAGGAAGCTGGTACTATTATCCATATTATTACAATTCTGGACACACGTATTCCCATGTTCCAAACATATTATATTGGGGACGGGTTTCGTCTATTCTATCAGCGCTTCCAAAGTCAATGTCCTTTATGTTCTTTTGGTTTATGTCTATATTATGGTTCTCATCCTTATTATCCCCATGGATACAGCCCTTCTCATATATGTTTTGTATATTACGAATATGCTGGAATATTATTTTTTTGGCTTCGGTTTCCTCAAGTTTTTTACAGTATTGTTATTGCAGTACGTCAACACTATTTGGAATATATTCTATGTTTACTATATGTTACATACCATTTTCGGTATATTCGATATGCTTATTATCACCGGGAGTATCTTGCAGGGCTTTCAACACGATGTCTTCATTTCCTGGAATTTCTTTTTTACAAACGTACTTATATATATTGGGTTGCCCTACTTGTTGTCCCAAAAAGACGTTATTTCTACCACCCTCAAACATGGGTCTCGTCGCAATGCAATACATGTGCTGCGTTGTGGAGATCCTTTCCACCTTTGCTGTACGATATACCGCATATTGTGCCTGTGGGTTTTTTATCATTTTTTTATGCTGTTGTTCCGGCCTGGACATGTTTTAATACCTTTATATATACAGGGTTACAAGGTTTATTTTCAATATATGCCTTATTGTTGGGATTATATTCGTACAAGGTATACCCTATTCCTACTTCTTTGTTTTTTTGGTACAAAAACTGTTTGCCCTCGTACGATATGCTATACGCTTTTACTTCGGCTTTTACAAGCGGTTGGCAGGGATTGGGCAAACGTATATCGCGTTCAAAGTTTTCATGCAAAAGCAAAGCATTTGTGGGCTGTCACATCAGACAGCCGCTTTCGCCGTTGCAGGCACATTCAATGGCCGCCCTTTTTACTATATCGCGGAAAGCAGAAGTACGATGGCTCTTTTCAAGCCCCCTTTCATGCAAACGCTCATCAATCGTTTTTTGTTCCTGTCTGCCTTCGGGAATACTATACAACATTTTTTGTTTACCCACCGCGATGTACAAAAAAGGCTGTACGGTTTTCTCCTCGGGCGGTACCGCATCGTGGCTACCAATGCGTATATTGCGCGCCTTCACTTGTTCCTCTCGGGCCTTATCCCAGTACGGCTCCAGGATATGTACCTGCCGCCCGTATTTGCGATCCAATCCCTCAGCCCCCGTTTTACAGACGAGTACAATTTTATTATCCTCTCCGTGTATATTCAGCGGCGAATTCCAAAGCTGCTGGATCATGTCGCGCTCTTTGGATACAATTTTCCCTGTATTATGCGTATATCGTGTTATTTTGGAGGACAGGACTATCGTACGGGTCGGTCCATCTTCCGCAAAGTTTTTCACCATATGTTCTTTCCCATCCTTATGCAGAAGGATGGTGTTGTGCCCTTCTTCCAATACCTTTACGGGCTGCAGGCACTGGTACCCCTCTATTTCTACAAAGCGGGCCACGACGTGCAGGCCCAATTCCACAAACTGTGTGTATATGTGCACAGGGCCCGGAGACGTTTTATTATTTTTTATCATGCAAACTATTTTGGGACTACAATTTTCTGTGCAGGCCTCTTTGGGCAGCTGCTGTACAGCCTCTGTTATTTTTTCATCCTCCTTTACTGTTACCATTTCGGACGCGAAGATGCTGTTCATACGGGAACGCACATACTACGAGGAGCCTGTCTCTTGCTCCGATCCTGGCAGGCAGAGGGCGGCGGCATTTATTTTTTCATACATTCCTGTGCTGGCGTGCTTTTCCGCGTTTTCAACGTCTCGGGCCAGCAGATATTGCCTATACTGCTCGGGTGTCATTTCAACCTTTTCTATATTACGAGGAAGCTCTGTGGGGAATACCTTGTTGTGCTCATTCTGGTTTCCAGCGTACCTTATCATCCCCACTACGCGGTTTACTACTTTGTCCGCATTTACAGGGCTATTCGTTGTTTTATTATCATACGCGGTGTACAATCTTTCATACTGCAGAGGTATTACGATTCGCCCGCTTACCATATTACAACAGGGCACCATTTCAAAGGGGTCCTTCGAACACGGGGTGCCTGTTACAAACAGAATACGAATATTTTTACCTTGCATATTATTATTGTACAGCTGGCGGGCATTTGTTTTATCATTGGCGCTATTGTTATTTCCTCTACAGAGGTTGTGTGCCTCGTCAACGATGTGCAGGCATCCGTTTACGGACCCTCCCGCCTTTATGTTCTGCTGCCCCATGTTGTATGCGTCTACGGACACAAACCTACAGCGCCGCGAGATTTTTTGTACCTCTTTGGAGTGTTCCGTCGTTTCCGGATATACAAGTTTACTATGCTTTACCAAAGACTGTTGGAAGTTTGTGTGCAACGACTTGGGTGCTATCAGAATCGGGTTGTATATATGTGCAAGTGCGATGGCAAGCGACAGGCTCAAAATGGTTTTCCCCATGCCCATCTGGTGTTACATGTGGAGGCCCCGTGTGTTTTCCCCCTGGCCTATCCCAAATTTACGATCCGAAAAGGCGGTGTATATTACAAACTGGTACTATTTCAGGGCTCGTGCAAAGCGGGCAGTGTGTGTGGTGTCTTTGCTTTCCTGCAGCTCTTTATATTTTTCAAATACCTCTTTTACGTATGCTTCTGTTTGGACGGGGAAGGAGGTGTTGTTGTGCACGCAAGACATGACTCGTTATATGGATCCCATATTACAACTTCATTACAAGAATACGGCTGCTGTTATCTGGCGCTGCACTTACAAATGGGGTACCCCTTTTTCTTGTATATCCGGTGCCTGTCGTACACCTGGCTACAAAGCGGGCTTACTGTATCTTTATTGTCCACGACGATGCGTACCTTTTTTTCATCCGATCCCTGCCGGGTATTACGTCCCAAGATTTGCTCCATGTTGTTTCTGCGGGGCGTTGCCATGTTGTTCGATGTCATATGCTTGCAGGAAATGCCTCTCCGCCCGTACCCATACGTCAGCAAGATATTGGAAGCGCTGTGTGCCTGCGAAAGAGCGGTATTTGCAACCCCGCCGCATACGAGCGCCACCTCCGGAACGATATTTTGTACATCTTTGTATTCTTTGGAAAGCGCCTGTTACAAAATTTCTACAAGTTTACGAAATTCCACGAAAATGTTGTTGCCATACGGCTCATCGGTCCCCCATTTGTGTGGTTCAGCGGTATGCAGGGAGTACAGCCGCTTTGCCTCATTTACGACAAGCTGTATACGCGAAGGATCTTGCAGTACTTTATCAATGGTGGCAATGGCCGATACCTTTTCATTATTACACACAGGGCTGTCAAAGTCAGGATGTCCCTGTTATTCGATTTCCCTCACGTACCCGGAAAAGGTTGTGGTGGGACTTACAGTCCTCTGGGGCTGTCCTACATGGTGTATATTATTCTTGTCCATACCATCGGGCCGGTCCAGGGGTGTACCGGACAGTCCTATTATCCGACTCAGTTGTATTTTCCAAAAAATTTTGTATTTTTCCGGCGAGTGTATTTCATGTGCCTCATCTATCACGACTACACCGAAGGGCTCAAAGAACTGCTCAGGCTTCTTGCGCAGGGTATTATTGTTTCCCACGATGTCGTCGTACTCTTTACTCGTCATGTCCTTTTTCTTGCACGCTGCATTATTGTATGCAGCTACACGTACGTGGGGCAGGAGCAATGTTACCTCGTCGATCCACTGTACTTGTATCGCCTTGGTGGGCACGATGTCTACGGTACGGTACAAAAGTTTTTGTATATTACTGTTCGCAATACGCGTTTTCCCCAAACCGGTATTTACATGTACGTACAAGCGCCCATACGGGGACAGGAGCTTTTTATGTATCTTATCGACCATTTCTTGCTGGTACTTATATACTGGAAATTCTGTTTCAACGCATGGGAGGGCCCGCAGCGACACGGGGCGCGCCGTGTATACCATGTTATACATTTCAAACTGCTTTCGCAGCAATATGGGAAAATATATGTATTCCCCCTGCAGCGTGCAGGCAGTTTCCTGTCTTATGGCTATGTGCTTTGGCTGCCCAGGTATTGCCCGCGCCGTATCGGTGTGCGCCTTACGAAGGCGCCCGAAATCATGTTGTATTTTACTTTGTACCCTCTTATATTTTATTCCTATTCCAGCAAAGGATATAA
Protein
MAAMQQEPRQRRPAKKSINTACYTPRKSVLAIIPFHLYYSLMGKQAQISYEYRARLPMLSKCQYFHLCFLFLYKKFIYMFLLVDAFIYFLWNWTCKQFLLYMECNTTSSLWLSLYAPTKYSFFPCISNIYLHMLYRRCNTLPLSFMFFRGRYISHYILFRSMWIPSPIIYSFLSKTISYQRVFVFLFLDIYTCKRLYCVQISRFLSNVYRRFHPKKYNYIYQKIESEFHYTLYLYKTSKYYHFYTLLLLPKYAVFLFYALYTKDATQDSYRKAVYFHYLLYNPCYTAFPSLQCSREYIFPLSGYHLYTNFLHEIYKDYPRPYLSSTQLQEAGTIIHIITILDTRIPMFQTYYIGDGFRLFYQRFQSQCPLCSFGLCLYYGSHPYYPHGYSPSHICFVYYEYAGILFFWLRFPQVFYSIVIAVRQHYLEYILCLLYVTYHFRYIRYAYYHREYLAGLSTRCLHFLEFLFYKRTYIYWVALLVVPKRRYFYHPQTWVSSQCNTCAALWRSFPPLLYDIPHIVPVGFLSFFYAVVPAWTCFNTFIYTGLQGLFSIYALLLGLYSYKVYPIPTSLFFWYKNCLPSYDMLYAFTSAFTSGWQGLGKRISRSKFSCKSKAFVGCHIRQPLSPLQAHSMAALFTISRKAEVRWLFSSPLSCKRSSIVFCSCLPSGILYNIFCLPTAMYKKGCTVFSSGGTASWLPMRILRAFTCSSRALSQYGSRICTCRPYLRSNPSAPVLQTSTILLSSPCIFSGEFQSCWIMSRSLDTIFPVLCVYRVILEDRTIVRVGPSSAKFFTICSFPSLCRRMVLCPSSNTFTGCRHWYPSISTKRATTCRPNSTNCVYMCTGPGDVLLFFIMQTILGLQFSVQASLGSCCTASVIFSSSFTVTISDAKMLFIRERTYYEEPVSCSDPGRQRAAAFIFSYIPVLACFSAFSTSRASRYCLYCSGVISTFSILRGSSVGNTLLCSFWFPAYLIIPTTRFTTLSAFTGLFVVLLSYAVYNLSYCRGITIRPLTILQQGTISKGSFEHGVPVTNRIRIFLPCILLLYSWRAFVLSLALLLFPLQRLCASSTMCRHPFTDPPAFMFCCPMLYASTDTNLQRREIFCTSLECSVVSGYTSLLCFTKDCWKFVCNDLGAIRIGLYICASAMASDRLKMVFPMPIWCYMWRPRVFSPWPIPNLRSEKAVYITNWYYFRARAKRAVCVVSLLSCSSLYFSNTSFTYASVWTGKEVLLCTQDMTRYMDPILQLHYKNTAAVIWRCTYKWGTPFSCISGACRTPGYKAGLLYLYCPRRCVPFFHPIPAGYYVPRFAPCCFCGALPCCSMSYACRKCLSARTHTSARYWKRCVPAKERYLQPRRIRAPPPERYFVHLCILWKAPVTKFLQVYEIPRKCCCHTAHRSPICVVQRYAGSTAALPHLRQAVYAKDLAVLYQWWQWPIPFHYYTQGCQSQDVPVIRFPSRTRKRLWWDLQSSGAVLHGVYYSCPYHRAGPGVYRTVLLSDSVVFSKKFCIFPASVFHVPHLSRLHRRAQRTAQASCAGYYCFPRCRRTLYSSCPFSCTLHYCMQLHVRGAGAMLPRRSTVLVSPWWARCLRYGTKVFVYYCSQYAFSPNRYLHVRTSAHTGTGAFYVSYRPFLAGTYILEILFQRMGGPAATRGAPCIPCYTFQTAFAAIWENICIPPAACRQFPVLWLCALAAQVLPAPYRCAPYEGARNHVVFYFVPSYILFLFQQRIX
Summary
Uniprot
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Capsid
Topology
Length:
1727
Number of predicted TMHs:
15
Exp number of AAs in TMHs:
336.780319999999
Exp number, first 60 AAs:
1.15051
Total prob of N-in:
0.97114
Length:
1726
Number of predicted TMHs:
15
Exp number of AAs in TMHs:
335.405759999999
Exp number, first 60 AAs:
1.15051
Total prob of N-in:
0.97114
inside
1 - 66
TMhelix
67 - 89
outside
90 - 108
TMhelix
109 - 131
inside
132 - 151
TMhelix
152 - 174
outside
175 - 239
TMhelix
240 - 262
inside
263 - 393
TMhelix
394 - 411
outside
412 - 425
TMhelix
426 - 448
inside
449 - 459
TMhelix
460 - 482
outside
483 - 518
TMhelix
519 - 541
inside
542 - 552
TMhelix
553 - 575
outside
576 - 656
TMhelix
657 - 676
inside
677 - 835
TMhelix
836 - 858
outside
859 - 913
TMhelix
914 - 931
inside
932 - 951
TMhelix
952 - 974
outside
975 - 978
TMhelix
979 - 1001
inside
1002 - 1035
TMhelix
1036 - 1058
outside
1059 - 1727
inside
1 - 66
TMhelix
67 - 89
outside
90 - 108
TMhelix
109 - 131
inside
132 - 151
TMhelix
152 - 174
outside
175 - 239
TMhelix
240 - 262
inside
263 - 393
TMhelix
394 - 411
outside
412 - 425
TMhelix
426 - 448
inside
449 - 459
TMhelix
460 - 482
outside
483 - 518
TMhelix
519 - 541
inside
542 - 552
TMhelix
553 - 575
outside
576 - 656
TMhelix
657 - 676
inside
677 - 835
TMhelix
836 - 858
outside
859 - 913
TMhelix
914 - 931
inside
932 - 951
TMhelix
952 - 974
outside
975 - 978
TMhelix
979 - 1001
inside
1002 - 1035
TMhelix
1036 - 1058
outside
1059 - 1726
Population Genetic Test Statistics
Pi
0.0294487
Theta
0.0432361
Tajima's D
-0.9935122
CLR
0
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 | |||
| China_ASFV-SY18_2018 | |||
| Poland_Pol16_20186_o7_2016-2017 | |||
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 | |||
| Poland_Pol17_03029_C201_2016-2017 | |||
| Poland_Pol17_04461_C210_2016-2017 | |||
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 | |||
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 | |||
| Portugal_OURT_88.3_1988 | |||
| Spain_E75_1975 | |||
| Russia_Georgia_2007 | |||
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 | |||
| Russia_Kashino_2013 | |||
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 | |||
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 | |||
| China_LN_2018 | |||
| China_wbBS01_2018 | |||
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 | |||
| Lithuania_LT14_2014 | |||
| South_Africa_1985 |
Protein Protein |
QGM12938.1 QGM12938.1 |
|
| South_Africa_2_2008 |
Protein |
QGM12938.1 |
|
| Zambia_LIV_1983 |
