ASFVdb The African Swine Fever Virus Database
Strain
South_Africa_1985 (Region: South Africa;  Strain: SPEC_57;  Date: 1985)
Gene
pEP153R
Description
Annotated in NCBI,  EP153R
GenBank Accession
Full name
Lectin-like protein EP153R       + More
 

Sequence

CDS
ATGTTTTCTATCAAAAAGTACATTGGTCTTATCAATACGAAGGAGGATTTGCAAAAAAAAATACATGTTTATACTATATTATTATTTGGAATATTATTTGGAACTATCATCTTATGCCTTATTATATATATATTACGAGAGATTATTATACCAATATGTTACCAAAATGTTGTTACGATATTTTATTGCCCTACAGATTGGGTTGGATATATTATTGTTTGTTATTATTTTGGCAATGCAGAAAAAAATTATATTATTGCAAGTATTTATTGTATGCAATTATATACTACGCTTACTATTATTATTACTATTTTACTATATCTTACTACAACATTATATCTTACTACAACATATATTCACGAATCTATTTATTGGGTTATTTATTCTTTATTTACAAATGTGTCAGTACTATTACGTATTACTGGATATTACAAAAAACAAAAACATGTATGTTTATTATATATTTGTACTATATAA
Protein
MFSIKKYIGLINTKEDLQKKIHVYTILLFGILFGTIILCLIIYILREIIIPICYQNVVTIFYCPTDWVGYIIVCYYFGNAEKNYIIASIYCMQLYTTLTIIITILLYLTTTLYLTTTYIHESIYWVIYSLFTNVSVLLRITGYYKKQKHVCLLYICTIX

Summary

Function
Participates to viral hemadsorption, which may help viral spread. Reduces the transactivating activity of host TP53, thus inhibiting apoptosis (By similarity). Non-essential for virus growth in swine macrophage cell cultures (By similarity).
Similarity
Belongs to the asfivirus lectin-like protein family.
Keywords
Complete proteome   Glycoprotein   Host membrane   Host-virus interaction   Lectin   Membrane   Modulation of host cell apoptosis by virus   Signal-anchor   Transmembrane   Transmembrane helix  
Feature
chain  Lectin-like protein EP153R
EMBL
FR682468    CBW46723.1    KM609342    KM609360    KM609362    KM609363    + More
KU752730    KU752731    KU752732    KU752733    KU752734    KU752735    KU752736    KU752737    KU752738    KU752739    KU752740    KU752741    KU752742    KU752743    KU752744    KU752745    KU752746    KU752747    KU752748    KU752749    KU752750    KU752751    KU752752    KU752753    KU752754    KU752755    KU752756    KU752757    KU752758    KU752759    KU752760    KU752761    KU752762    KU752763    KU752764    KU752765    KU752766    KU752767    KU752768    KU752769    KU752770    KU752771    KU752772    KU752773    KU752774    KU752775    KU752776    KU752777    KU752778    KU752779    KU752780    KU752781    KU752782    KU752783    KU752784    KU752785    KU752786    KU752787    KU752788    KU752789    KU752790    KU752791    KU752792    KU752793    KU752794    KU752795    KU752796    MG939583    MG939587    MG939588    LS478113    AJB28370.1    AJB28402.1    AJB28406.1    AJB28408.1    ANC98852.1    ANC98853.1    ANC98854.1    ANC98855.1    ANC98856.1    ANC98857.1    ANC98858.1    ANC98859.1    ANC98860.1    ANC98861.1    ANC98862.1    ANC98863.1    ANC98864.1    ANC98865.1    ANC98866.1    ANC98867.1    ANC98868.1    ANC98869.1    ANC98870.1    ANC98871.1    ANC98872.1    ANC98873.1    ANC98874.1    ANC98875.1    ANC98876.1    ANC98877.1    ANC98878.1    ANC98879.1    ANC98880.1    ANC98881.1    ANC98882.1    ANC98883.1    ANC98884.1    ANC98885.1    ANC98886.1    ANC98887.1    ANC98888.1    ANC98889.1    ANC98890.1    ANC98891.1    ANC98892.1    ANC98893.1    ANC98894.1    ANC98895.1    ANC98896.1    ANC98897.1    ANC98898.1    ANC98899.1    ANC98900.1    ANC98901.1    ANC98902.1    ANC98903.1    ANC98904.1    ANC98905.1    ANC98906.1    ANC98907.1    ANC98908.1    ANC98909.1    ANC98910.1    ANC98911.1    ANC98912.1    ANC98913.1    ANC98914.1    ANC98915.1    ANC98916.1    ANC98917.1    ANC98918.1    AXZ95832.1    AXZ96020.1    AXZ96115.1    SPS73480.1    AY261366    MK645909    QDL88088.1    AF017028    AAC28413.1    AF017039    KM609339    KM609341    KM609356    KM609357    AAC28424.1    AJB28365.1    AJB28368.1    AJB28395.1    AJB28397.1    KM609349    AJB28383.1    KM609359    AJB28400.1   
Pfam
PF05473   UL45
Interpro
IPR016186   C-type_lectin-like/link_sf
IPR008646   Herpes_UL45-like
IPR016187   CTDL_fold
SUPFAM
SSF56436   SSF56436
Gene 3D
PDB
4KI1     E-value=0.175241,     Score=75

Ontologies

Subcellular Location

From MSLVP
Single-Pass Membrane
From Uniprot
Host membrane  
Host membrane  

Topology

Length:
159
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
88.973
Exp number, first 60 AAs:
27.43851
Total prob of N-in:
0.96352
POSSIBLE N-term signal
sequence
Length:
158
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
88.96954
Exp number, first 60 AAs:
27.44097
Total prob of N-in:
0.96326
POSSIBLE N-term signal
sequence
inside
1  -  20
TMhelix
21  -  43
outside
44  -  57
TMhelix
58  -  77
inside
78  -  83
TMhelix
84  -  106
outside
107  -  115
TMhelix
116  -  138
inside
139  -  159
inside
1  -  20
TMhelix
21  -  43
outside
44  -  57
TMhelix
58  -  77
inside
78  -  83
TMhelix
84  -  106
outside
107  -  115
TMhelix
116  -  138
inside
139  -  158
 
 

Population Genetic Test Statistics

Pi
0.1357419
Theta
0.1870204
Tajima's D
-0.845199
CLR
1.511887
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014    
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985 Protein
Protein
QGM12911.1
QGM12911.1
South_Africa_2_2008    
Zambia_LIV_1983    
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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