ASFVdb The African Swine Fever Virus Database
Strain
South_Africa_2_2008 (Region: South Africa;  Strain: RSA_2_2008;  Date: 2008)
Gene
pDP63R
Description
Annotated in NCBI,  DP63R
GenBank Accession
 

Sequence

CDS
ATGCCTTTACAGAGGCAGGGGCGCTTGCTGGGAAAAAAAATACAAGAGTGTTACAGTACATATTACGTCTTAATATCTTTATGCGAGAGTTGTTTCCCCCCCGTACAGATCCTGTTCCTTATCAAATCCAAATTCTGTTACAAAACTACATTCTACAAAATGTCTCAACTGTTTTTACATATTATTGCCAGTAGTCATTGTTTATATCAGAATATAACCCATTTGTTTATCTTTTTTGTGGGACGGCTATTAAAGTCCATCGCAAAAAAAAGATTAATCTTTTATCAGATACTTACAACGTTCTATATGTGTGTCTATGCGATGGATCATATTTTGTTGTTCATACTACGAAGCAAGCTTTTTGGCGAAAACGACGGAGTTACAGAATTTATCCCGCTCATGTTTGGATACGACTTTTATCAGCGAGCCAAAACAGTATTTACAAATTTGGCAATATTTTTTTTGCGATGTATTATACAAACACTTGTTCAGTGCCCGCTTCACTTTCTGTTCAGACATATTTGCCGCATATCAGGTCTTTTTATACTTACTATTATATTTATGTTCCGCAAGCACCATTATCAAGGGAACGATGGGAAGCTGCCTTTCTTGGTGCAATTTACGTATATATTCGATGGCCACCGCTTGGATGTCTGTGTATTTTACTATGTTACAAATGTTACCTTTCATGGTTGTACAAATATACATAGGGTTTTCTTTTTCTGTATACAGTTTGCAAAGCTTATATTTGCGTGCAACGATGGCCATTTTTATCACAAGATGGTATACTGTATCTTTACGTACAAATGCCTTGCAAGCCGCGATGTTGTTGTTGTTGTCTCCATGTACGGCGATACAAACTATTGTTTCCATTTTACATGTTTTTATCTGCATTATTACAGGAATACAGTCAATGTTATTATATTTATTATTACTGTATTACACCGAATCAATGTCAGTCATCTGCGAATCAAGCTGTCTTATTACTATATTTATCGTTTTTTTGGAGGCATGTCCTTTGTTCGCGGCACTATGTGCACACAGTATACCAAAATTGTTATATATATTTTGTTTTACGAGAAGGAGTATTATTTTCCTTCGGTTATACTACGCAGCATCTGTGTTGTTTATTTGCCGATATATGTTACAATGCGTTATCAGCTTTTTACAAAAACGGAAGTATTTTTTTTGGATCGCTGTTTGCATCATTGCAATATTGCGATATTCAGGGTATATATTGGGTACGTCACATGCTACCTCTATCAAAGAATACTCGCCCAATCTACAGGCTGTGTTGCAAAGCGTACTATCATCATACGTATCGAGTACCCCCGCTGTTACAAACCAAGCGATACGATGTATGTGCCGTTCCTTGCAAGCTATCGCAAATACGGAGTTTCCTATGGAATGTCGAATATTGTACTCCCTATTTTTTTCCAAAATGTTTGGAAAATTGTATACCGTCGCAGCATACAGTACACACTCCATTCTGGCGTTATATTTTTTACTTTTACATATGTATACGTGGAAGAACTCGAATATTTCTTGCGAACTTGTTATATGCATATTATGGTGTTATTTTGGTGTACTTATATGTTATGCGAAAATGCATTCTATTACATCTTTTCGGTTATGCTTTACCGCCTGTGCTATGGCATATTCAGGCTCGACCCATACGACTACTGTTTTTATATTTGTGTTATTCGCCTGCTTTGCCAGGGCATACTTTACGACGCTCCGGTTGGAAAAAATTTTGTTATGCAGATGGACAACAGTGTCCATTTTTATGTTGGGACCATTCCAGTATACTCCTATATGCTGTACCAGATCTTTTGTTACTTGTGCAGCGTTCTCGGGAGTCATATATATATGTTGCAGGGCTTTTTTCTGTATGGAGAACATTTCGTCGTAATCGTACAAAAAAAAATTAAAATTTGGGCATGGATGATTCAAACATAA
Protein
MPLQRQGRLLGKKIQECYSTYYVLISLCESCFPPVQILFLIKSKFCYKTTFYKMSQLFLHIIASSHCLYQNITHLFIFFVGRLLKSIAKKRLIFYQILTTFYMCVYAMDHILLFILRSKLFGENDGVTEFIPLMFGYDFYQRAKTVFTNLAIFFLRCIIQTLVQCPLHFLFRHICRISGLFILTIIFMFRKHHYQGNDGKLPFLVQFTYIFDGHRLDVCVFYYVTNVTFHGCTNIHRVFFFCIQFAKLIFACNDGHFYHKMVYCIFTYKCLASRDVVVVVSMYGDTNYCFHFTCFYLHYYRNTVNVIIFIITVLHRINVSHLRIKLSYYYIYRFFGGMSFVRGTMCTQYTKIVIYILFYEKEYYFPSVILRSICVVYLPIYVTMRYQLFTKTEVFFLDRCLHHCNIAIFRVYIGYVTCYLYQRILAQSTGCVAKRTIIIRIEYPRCYKPSDTMYVPFLASYRKYGVSYGMSNIVLPIFFQNVWKIVYRRSIQYTLHSGVIFFTFTYVYVEELEYFLRTCYMHIMVLFWCTYMLCENAFYYIFSVMLYRLCYGIFRLDPYDYCFYICVIRLLCQGILYDAPVGKNFVMQMDNSVHFYVGTIPVYSYMLYQIFCYLCSVLGSHIYMLQGFFLYGEHFVVIVQKKIKIWAWMIQTX

Summary

Uniprot
ProteinModelPortal
PDB
6U5O     E-value=1.73196,     Score=75

Ontologies

Subcellular Location

From MSLVP
Multi-Pass Membrane

Topology

Length:
653
Number of predicted TMHs:
16
Exp number of AAs in TMHs:
322.49075
Exp number, first 60 AAs:
23.63453
Total prob of N-in:
0.96684
POSSIBLE N-term signal
sequence
Length:
652
Number of predicted TMHs:
16
Exp number of AAs in TMHs:
322.54341
Exp number, first 60 AAs:
23.63453
Total prob of N-in:
0.96684
POSSIBLE N-term signal
sequence
inside
1  -  20
TMhelix
21  -  43
outside
44  -  57
TMhelix
58  -  80
inside
81  -  91
TMhelix
92  -  114
outside
115  -  144
TMhelix
145  -  163
inside
164  -  169
TMhelix
170  -  189
outside
190  -  218
TMhelix
219  -  241
inside
242  -  261
TMhelix
262  -  284
outside
285  -  296
TMhelix
297  -  319
inside
320  -  339
TMhelix
340  -  359
outside
360  -  362
TMhelix
363  -  385
inside
386  -  405
TMhelix
406  -  425
outside
426  -  463
TMhelix
464  -  483
inside
484  -  489
TMhelix
490  -  509
outside
510  -  523
TMhelix
524  -  546
inside
547  -  592
TMhelix
593  -  612
outside
613  -  621
TMhelix
622  -  639
inside
640  -  653
inside
1  -  20
TMhelix
21  -  43
outside
44  -  57
TMhelix
58  -  80
inside
81  -  91
TMhelix
92  -  114
outside
115  -  144
TMhelix
145  -  163
inside
164  -  169
TMhelix
170  -  189
outside
190  -  218
TMhelix
219  -  241
inside
242  -  261
TMhelix
262  -  284
outside
285  -  296
TMhelix
297  -  319
inside
320  -  339
TMhelix
340  -  359
outside
360  -  362
TMhelix
363  -  385
inside
386  -  405
TMhelix
406  -  425
outside
426  -  463
TMhelix
464  -  483
inside
484  -  489
TMhelix
490  -  509
outside
510  -  523
TMhelix
524  -  546
inside
547  -  592
TMhelix
593  -  612
outside
613  -  621
TMhelix
622  -  639
inside
640  -  652
 
 

Population Genetic Test Statistics

Pi
0.0512136
Theta
0.0591909
Tajima's D
-0.6550077
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014    
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985 Protein
QGM12876.1
South_Africa_2_2008 Protein
Protein
QGM12876.1
QGM12876.1
Zambia_LIV_1983 Protein
QGM12776.1
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