ASFVdb The African Swine Fever Virus Database
Strain
South_Africa_2_2008 (Region: South Africa;  Strain: RSA_2_2008;  Date: 2008)
Gene
pB117L
Description
Annotated in NCBI,  B117L
GenBank Accession
 

Sequence

CDS
ATGGCTCATGGAATGCGTGTTGCGCCGCTGCATGTGGTGCGGCTATGGCCGCGCGTGTTACGGCCGTATGGGATGTGGCATTTGCTTGCGTGTATGGATCGTGTTGTGTCGGGTCTTCATCCCAGCAATATTCGCCATCTTTATCTACTTGTATTGTATACCCCATTATATATCACTTATTATTTTTTTTTATTGTTTCATGTATTTCATTATACGCGGTGCAAGGGTCCTCAGGCCCCTTCTGTACAAGATTATACAGATCTTCGGATGCTTTATGTTTCGTGCGAATTATGGCGGGATATATCAAAAGAGAGGGCCCCAGTTCCAAACAAATTTTACTTACCGGGCTCATATTTTGCACCAAGTTTCCCACTACTTGCGATGTTTCATATCGCATTTTACAGAGCTTTATCATACAAGTGTTATGCAGGCCGGTGTACTCTGGCCTATACTTATGGAAGGGGATTTCTCTGGTACCGTCAAACACGACCTCAAGCCCTCTACCAAGTCCGATCAAAATTTCTTCAGCAATGGATGTGTATCTATTTCCTACATTACGAAGCGTATGCATTTCTATATCATCATCTATTTCCTGCATACAGGAATCTATTGTACGAATTTTATTGTCATCTGTGCTGTTTTGTTCATTCCCAAGATACGTATGCAGCATATTATTTTTTTCTACCTTTACCAGCTTACTCTTACGCTCATATTCATGTTCTTTTTTATACAAAGAGTTGGGATCACCGTTGGACCGTACATGTTTATTATGGCGGTCTACTTGCTTTGTGCTACGTTTATTACTTTTTTCACTATACTCGCTTTCAGCATACTGGTTTTTGCGATCTCTTTTACAAATACCTGTTTTTTGCGATGCCTCAGACTCTGCATATTTTTTTCTATGCGTACAAAGAGAATATCCGCGGTCATTACGTGTACTACTGTTGCGTGCAGGGCCTCGGCGCGTCTTACCGCTGCGCACACTGCCATCACGTATACTGCCGCTGCGTATACTGCCATCGCGTATACTGCCATTGCGCATACTGCCACTGCGCATACTGCCACTGCGTATACTGCCGCTACATACACTATCACTACATATGCTGTCAGTACATACGCTATCGCGGCGTATGCCGCCGTGTACCTTATCGCTGCCCCTACCCGAGGGTTTTTTACATATATTACTGTGCGGGGAGTCAAGCGAAAATTCAGGGTCATTACAGTTATTGCCCAATGTCTTTGCCAATCCATTATGCTCTTCATCGAAATGTTCGGTACGAAAACTTTGTTGCTTGCCCATGTCCTGTTTTTCAAGTTCCTCCAAATTGGCTTGCTCATTTATATGGAGATTATTCATATGCGTCGTATTTCCAGCAAGATTTGCTCCTTCTACAAATGTACTGTCCTCCATCGGATATACTATACTATTTAAAAGCTTTTATATACAAATGTGTTTGGAAGAAATGCTCTCTTCTATCGTGTGTACCTCAGATATATATGCCTCCTCAGAAAGCTTTCCACCATACTCCTTTCTCATCGTATACGAGGGCGCCGGCTTATTGTACGAAATCCACTGGGAGGTACAAAACCGGTACAACATATTTACCAGCTCGCGGGCCTCCCACCTTTTGGGCTCCGTATACTGCACATCAACATACGAGGCGGCGCATGCAAAGCTGCAAAAGTTGCCGAGAACGCCCATCTCAATCTCTCCTCGCTCATTTTCACGCATATACGTGGGCACGAATTTCGGAACAGTCTTGCAATACAGATGTCATGTCCAGCATTTACAGCTACAATGGGTATCCCATTTGGAAACAGTGGTGTATACGGAGGGTACCTTTTTTTCGACCTCAGCTTCATCGTCATTCGTATTTATCGTATCGATGGCAGTTTTTTTGGTTTGCAAGCATTCTTCAATACTATTCCCGGATATGTATACAATATTACGACAATTACTTTCCATAA
Protein
MAHGMRVAPLHVVRLWPRVLRPYGMWHLLACMDRVVSGLHPSNIRHLYLLVLYTPLYITYYFFLLFHVFHYTRCKGPQAPSVQDYTDLRMLYVSCELWRDISKERAPVPNKFYLPGSYFAPSFPLLAMFHIAFYRALSYKCYAGRCTLAYTYGRGFLWYRQTRPQALYQVRSKFLQQWMCIYFLHYEAYAFLYHHLFPAYRNLLYEFYCHLCCFVHSQDTYAAYYFFLPLPAYSYAHIHVLFYTKSWDHRWTVHVYYGGLLALCYVYYFFHYTRFQHTGFCDLFYKYLFFAMPQTLHIFFYAYKENIRGHYVYYCCVQGLGASYRCAHCHHVYCRCVYCHRVYCHCAYCHCAYCHCVYCRYIHYHYICCQYIRYRGVCRRVPYRCPYPRVFYIYYCAGSQAKIQGHYSYCPMSLPIHYALHRNVRYENFVACPCPVFQVPPNWLAHLYGDYSYASYFQQDLLLLQMYCPPSDILYYLKAFIYKCVWKKCSLLSCVPQIYMPPQKAFHHTPFSSYTRAPAYCTKSTGRYKTGTTYLPARGPPTFWAPYTAHQHTRRRMQSCKSCRERPSQSLLAHFHAYTWARISEQSCNTDVMSSIYSYNGYPIWKQWCIRRVPFFRPQLHRHSYLSYRWQFFWFASILQYYSRICIQYYDNYFPX

Summary

Uniprot
ProteinModelPortal

Ontologies

Subcellular Location

From MSLVP
Nucleus

Topology

Length:
656
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
125.20343
Exp number, first 60 AAs:
14.15421
Total prob of N-in:
0.60642
POSSIBLE N-term signal
sequence
Length:
655
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
125.25077
Exp number, first 60 AAs:
14.15373
Total prob of N-in:
0.60700
POSSIBLE N-term signal
sequence
outside
1  -  46
TMhelix
47  -  69
inside
70  -  111
TMhelix
112  -  134
outside
135  -  177
TMhelix
178  -  200
inside
201  -  220
TMhelix
221  -  243
outside
244  -  252
TMhelix
253  -  270
inside
271  -  282
TMhelix
283  -  302
outside
303  -  656
outside
1  -  46
TMhelix
47  -  69
inside
70  -  111
TMhelix
112  -  134
outside
135  -  177
TMhelix
178  -  200
inside
201  -  220
TMhelix
221  -  243
outside
244  -  252
TMhelix
253  -  270
inside
271  -  282
TMhelix
283  -  302
outside
303  -  655
 
 

Population Genetic Test Statistics

Pi
0.035191
Theta
0.0420433
Tajima's D
-0.6618406
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014    
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985 Protein
QGM12847.1
South_Africa_2_2008 Protein
Protein
QGM12847.1
QGM12847.1
Zambia_LIV_1983 Protein
QGM12847.1
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号

In processing...
Login to ASFVdb
Email
Password
Please go to Regist if without an account.
If you have forgotten your password, you can once again Regist an account with a registed or new email.
Change my password
Enter new password
Reenter new password
Regist an account of ASFVdb
It is required that you provide your institutional e-mail address (with edu or org in the domain) as confirmation of your affiliation.
Enter email
Reenter email
First Name
Last Name
Institution
You can directly go to if with an account.
Registraion Success
Your password has been sent to your email.
Please check it and login later.
Welcome to use ASFVdb.