ASFVdb The African Swine Fever Virus Database
Strain
South_Africa_2_2008 (Region: South Africa;  Strain: RSA_2_2008;  Date: 2008)
Gene
p505_6R
Description
Annotated in NCBI,  505_6R
GenBank Accession
Full name
Protein MGF 505-6R       + More
Protein MGF 505-7R      
Protein MGF 505-10R      
Protein MGF 505-2R      
Protein MGF 505-5R      
Protein MGF 505-4R      
Protein MGF 505-9R      
Protein MGF 505-1R      
 

Sequence

CDS
ATGTTCTCCCTACAGGACCTCTGTCGGAAGAACATTTTCTTCCTTCCAAACGATTTTACCAAGCATACCCTACAATGGCTGGGGTTATATTGGAAAGAGCATGGATCCGTCCATCGAGCAGAAAAAGACAGCATATTGTTACAGAATGTATTGGTTCTTTCTATCAATGTTGCTTTACTGCTTGCAGGAGAGGAGGGGGACATACATGTACTACAGCTCTTGTTATTATGGGAGGGTATTCTGCATTATGCCATCATACGAGCCTTGCAGACTGCGAAATATATCCTATTATGTGTGTACCATACCCAAATTCAGGACTGGCATATTCTCCTACCCATGTTTCAAGATCCAGAAACATTCGAAAAATGTCATGTTTTATGCCTTGCATGTGTCTTTATATGCCTTCTCCAACATGCTGTACAATATATCATGCTTTCTATCCTTGTCAAATATATGGAAGACTTACTATATGTATGGATTACGTATCGTATCCAATCCCTGTTTGTTTTGGCATGCGAAAACCGGAGAATTGCGATTATTCATTGGATACGCCAAAATCTGCCAATTCCTGCACCTGTTGCCATTTTTACCATTGCTGTTGCTACAAGAGATTTACAACTGTTTTCCTTACGGTACAAGATTATTTTTGTTTACATGCAAAGACAGGGAATCTTTCAATTATCCAATGGAGTTCGCATGGTTGTGCTATATCGTCACATTACCATGGCAATACATATTGGCCTTTTACCCTTTGGTCTGGAAACTTTACAACATGGTGGGAATATACATACAGCCTTATCTTATGCAGTATCACACAATACAAGAAAAATTCTGGATTATCTTATTCGCCAGAAAAATATACCCCCTATTACAATTGCAAGACTTTTATATCTGGCCGTGCAAAATCAATCTTCCAGGAAAACTTTGTACTTGTTGCTATCTTACATATATTACAAGGTGCAAAATGTTACAAAGCTGGTACAGCATGTACTATATGCGAAATCCACTCTTGTGTTACAAATTTTATTGGAAAAAAAGGAAAATCTACTGGATGCTGTTTTATCAAGACTTGTACAACATTCTACATATTTCCAGGTGCGAGAATTTATCCAGGAGTTTTCCATCAGCCCAGAAAAATTCATTACAATACCTGTGCGGGAAAAGAAAAATGTGTTATTCGAGGCTATTTCTGCAGATATTTGGGAAAATCCCACAGAAAGAATTACTTATCTCAAACAGATACTGCACACCATACAATATGCAAGTGGAAGACGATTTTTGTTACAGATCATTCACAGCATTTACCAAAGTTACTCACTACAACACGAAGATATTCTTATACTGGCAACATTTTATGTCAAACACAATGCAACCACCCATTTTACAGATCTCTGCAAATATCTTTGGCTGCACAGAGGAACAGAAAGTACGAAACTGTTTTTACAGTGTTTACAAATTGCTGCTGCGAAGGAGTTTCCTGCTATTACAAGTATTGTGTGTGTATATATTATCTACTTGTTTACTGCAGGAACTATTACCAAGGAAGAAATCATGCAAGCCTATGTTGCTTTACAGTACCCATGTATTAACATTCTGAAAGTAGACTAA
Protein
MFSLQDLCRKNIFFLPNDFTKHTLQWLGLYWKEHGSVHRAEKDSILLQNVLVLSINVALLLAGEEGDIHVLQLLLLWEGILHYAIIRALQTAKYILLCVYHTQIQDWHILLPMFQDPETFEKCHVLCLACVFICLLQHAVQYIMLSILVKYMEDLLYVWITYRIQSLFVLACENRRIAIIHWIRQNLPIPAPVAIFTIAVATRDLQLFSLRYKIIFVYMQRQGIFQLSNGVRMVVLYRHITMAIHIGLLPFGLETLQHGGNIHTALSYAVSHNTRKILDYLIRQKNIPPITIARLLYLAVQNQSSRKTLYLLLSYIYYKVQNVTKLVQHVLYAKSTLVLQILLEKKENLLDAVLSRLVQHSTYFQVREFIQEFSISPEKFITIPVREKKNVLFEAISADIWENPTERITYLKQILHTIQYASGRRFLLQIIHSIYQSYSLQHEDILILATFYVKHNATTHFTDLCKYLWLHRGTESTKLFLQCLQIAAAKEFPAITSIVCVYIIYLFTAGTITKEEIMQAYVALQYPCINILKVDX

Summary

Function
Plays a role in virus cell tropism, and may be required for efficient virus replication in macrophages.
Similarity
Belongs to the asfivirus MGF 505 family.
Keywords
ANK repeat   Complete proteome   Repeat   Reference proteome  
Feature
chain  Protein MGF 505-6R
EMBL
AY261363    FR682468    CBW46694.1    MG939583    MG939587    MG939588    + More
LS478113    AXZ95807.1    AXZ95995.1    AXZ96090.1    SPS73451.1    AY261366    U02468    U18466    FN557520    CBH29130.1    AM712240    CAN10377.1    KM262844    KM262845    KM102979    KP055815    KX354450    AIY22220.1    AIY22379.1    AJZ77060.1    AKO62711.1    AOO54355.1    AM712239    CAN10128.1    AY261361    AY261360    KM111294    AJL34045.1    MH025916    MH025917    MH025918    MH025919    MH025920    AXB49259.1    AXB49433.1    AXB49605.1    AXB49776.1    AXB49949.1    KM111295    AJL34210.1    CBW46695.1    SPS73452.1    AOO54356.1    AKO62712.1    CAN10129.1    AIY22221.1    AJZ77061.1    CBH29131.1    AIY22380.1    CAN10378.1    MH910496    AZP54156.1    CBW46697.1    AXZ95809.1    AXZ95997.1    AXZ96092.1    SPS73454.1    U03762    CBH29133.1    AJZ77055.1    AOO54359.1    AJL34209.1    AXB49258.1    AXB49432.1    AXB49604.1    AXB49775.1    AXB49948.1    AIY22382.1    CAN10380.1    CAN10131.1    AIY22223.1    AKO62714.1    CAN10127.1    CBH29129.1    AIY22219.1    AJZ77066.1    AKO62710.1    AOO54354.1    AIY22378.1    CAN10376.1    AJL34212.1    AJL34047.1    AXB49261.1    AXB49435.1    AXB49607.1    AXB49778.1    AXB49951.1    AJL34044.1    U03761    AXB49255.1    AXB49429.1    AXB49601.1    AXB49773.1    AXB49945.1    AJL34206.1    CAN10124.1    AIY22216.1    AJZ77062.1    AKO62707.1    AOO54349.1    AXZ95806.1    AXZ95994.1    AXZ96089.1    CBW46689.1    AXZ95802.1    AXZ95990.1    AXZ96085.1    SPS73446.1    MN194591    QED21580.1    CBW46693.1    SPS73450.1    CBH29126.1    CAN10126.1    CBH29128.1    CAN10375.1    AIY22218.1    AIY22377.1    AJZ77065.1    AKO62709.1    AOO54353.1    AJL34043.1    AJL34041.1    QED21582.1    CBW46692.1    AXZ95993.1    AXZ96088.1    SPS73449.1    AXZ95805.1    AXB49257.1    AXB49431.1    AXB49603.1    AXB49947.1    AJL34208.1    AJL34211.1    AXB49260.1    AXB49434.1    AXB49606.1    AXB49777.1    AXB49950.1    AJL34046.1    CBW46696.1    AZP54166.1    MH910495    AZP53987.1    AXZ95808.1    AXZ95996.1    AXZ96091.1    SPS73453.1    CAN10130.1    CBH29132.1    CAN10379.1   
Pfam
PF03158   DUF249
Interpro
IPR036770   Ankyrin_rpt-contain_sf
IPR004858   MGF_505
SUPFAM
SSF48403   SSF48403
Gene 3D
PDB
3OME     E-value=1.35698,     Score=75

Ontologies

Subcellular Location

From MSLVP
Capsid

Topology

Length:
536
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
81.59422
Exp number, first 60 AAs:
8.68438
Total prob of N-in:
0.79244
Length:
535
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
81.64746
Exp number, first 60 AAs:
8.68571
Total prob of N-in:
0.79256
outside
1  -  536
outside
1  -  535
 
 

Population Genetic Test Statistics

Pi
0.146467
Theta
0.138854
Tajima's D
0.3308458
CLR
0
Interpretation
Possibly Balancing Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014 Protein
QED21585.1
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985 Protein
QGM12893.1
South_Africa_2_2008 Protein
Protein
QGM12818.1
QGM12818.1
Zambia_LIV_1983    
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