Strain
South_Africa_2_2008
(Region: South Africa; Strain: RSA_2_2008; Date: 2008)
Gene
p110_8L
Description
Annotated in NCBI,
110_8L
Location
GenBank Accession
Sequence
CDS
ATGTGGATATGTATGGGATGTTGGATTTGCACAGTCCATTTGTTGTTCTGTATGGTTTCTGGGTCCTTCATATTATCTACATATACCATTCCAGCGAGAAACTGTGCAATTTATATTCCAGTCATTTTGGTGTATATCTGGCCAATCTGCTTGTATCCTGTTTCGGCAGATACCGTGGACGCATTCCCAGCAAAAGTCACATTGGTTTGCGTACGTGCACCAATATACTACCTCATGTTCAGGAGGATATCGGGTTGGTACTACATCTTCTATTTTACGTATACGAGCGGCCTGCAGAATATCCACCCCCAGTACTACTACAATTACCACCTTCATACTGGCCACCCTACACTAGACCTCTAA
Protein
MWICMGCWICTVHLLFCMVSGSFILSTYTIPARNCAIYIPVILVYIWPICLYPVSADTVDAFPAKVTLVCVRAPIYYLMFRRISGWYYIFYFTYTSGLQNIHPQYYYNYHLHTGHPTLDLX
Summary
Uniprot
EMBL
Proteomes
ProteinModelPortal
PDB
6O60
E-value=6.22995,
Score=61
Ontologies
Subcellular Location
From MSLVP
Single-Pass Membrane
Topology
Length:
121
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
64.12857
Exp number, first 60 AAs:
42.64187
Total prob of N-in:
0.74368
POSSIBLE N-term signal
sequence
Length:
120
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
64.19252
Exp number, first 60 AAs:
42.6147
Total prob of N-in:
0.75630
POSSIBLE N-term signal
sequence
outside
1 - 4
TMhelix
5 - 27
inside
28 - 33
TMhelix
34 - 56
outside
57 - 75
TMhelix
76 - 98
inside
99 - 121
outside
1 - 4
TMhelix
5 - 27
inside
28 - 33
TMhelix
34 - 56
outside
57 - 75
TMhelix
76 - 98
inside
99 - 120
Population Genetic Test Statistics
Pi
0.1418689
Theta
0.2005793
Tajima's D
-1.0354605
CLR
1.253351
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 |
Protein |
QGM12798.1 |
|
| China_ASFV-SY18_2018 |
Protein |
CAN10361.1 |
|
| Poland_Pol16_20186_o7_2016-2017 |
Protein |
QGM12798.1 |
|
| Poland_Pol16_20538_o9_2016-2017 |
Protein |
QGM12798.1 |
|
| Poland_Pol16_20540_o10_2016-2017 |
Protein |
QGM12798.1 |
|
| Poland_Pol16_29413_o23_2016-2017 |
Protein |
QGM12798.1 |
|
| Poland_Pol17_03029_C201_2016-2017 |
Protein |
QGM12798.1 |
|
| Poland_Pol17_04461_C210_2016-2017 |
Protein |
QGM12798.1 |
|
| Poland_Pol17_05838_C220_2016-2017 |
Protein |
QGM12798.1 |
|
| Poland_ASFV_POL_Podlaskie_2015 |
Protein |
QGM12798.1 |
|
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 | |||
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 | |||
| Portugal_OURT_88.3_1988 |
Protein |
CAN10361.1 |
|
| Spain_E75_1975 | |||
| Russia_Georgia_2007 |
Protein |
QGM12798.1 |
|
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 |
Protein |
QGM12798.1 |
|
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 |
Protein |
AIY22363.1 |
|
| Russia_Kashino_2013 |
Protein |
QGM12798.1 |
|
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 |
Protein |
QGM12798.1 |
|
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 |
Protein |
QGM12798.1 |
|
| Kenya_1950 | |||
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 |
Protein |
QGM12798.1 |
|
| Malawi_Tengani_1962 |
Protein |
QGM12798.1 |
|
| China_HLJ_2018 |
Protein |
QGM12798.1 |
|
| China_LN_2018 |
Protein |
QGM12798.1 |
|
| China_wbBS01_2018 |
Protein |
QGM12798.1 |
|
| Ukraine_Kyiv_2014 |
Protein |
QGM12798.1 |
|
| Belgium_Etalle_wb_2018 |
Protein |
QGM12798.1 |
|
| Lithuania_LT14_2014 |
Protein |
QEY87798.1 |
|
| South_Africa_1985 | |||
| South_Africa_2_2008 |
Protein Protein |
QGM12798.1 QGM12798.1 |
|
| Zambia_LIV_1983 |
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zhuzl@cqu.edu.cn,
mg@cau.edu.cn
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