ASFVdb The African Swine Fever Virus Database
Strain
Zambia_LIV_1983 (Region: Zambia;  Strain: LIV_5_40;  Date: 1983)
Gene
pCP2475L
Description
Annotated in NCBI,  CP2475L
Location
MN318203.1(+):113708-120370
GenBank Accession
QGM12735.1
 

Sequence

CDS
ATGAGAAATTATACAATCCGAATATCGCTATCATACTGTTTATCTGTGTACGTCTCACTGGGTCCTGTGTTACAAAACCCATACTCTGTATTGCTGGGGTTTATATTGTGGTCAGGACTGTCGAGCACATTTCTATACTGCGAGAGTTCTACGTTTACACGCAGTCGTATTACTCGCTGTATATTTGTATTATATATTACATTGCGTATGTGGCGAGTGTCAAAGCGATCTTTTCCGATTTGTACTATGGTGGGCTTTTGTATTCCAACTCCCACCTGTTTATCAATGGACCAGGGCCCTTCTTCCCGATTTTGTTCTGTGTTATACGTGTGTACACTATTTTCCGTATATGTGGTATGTTGTCGCATATCTGTTTGGGGCGTATTATTTTGTATTATATTTATCATCGAATTGGCTTGTCCGGCATTTCCTATATGTTCGATTATCTCGATATTGTTGTCCCCAATTTTGTACGGCAGCGATGTTCTCAGGGGTTGGATTGTTTTGTATTTCAGGTGTTTGTACTACATTATTCACTTCTCTTTGTGTATCTTCAAGCTGCCCCACCGCTCACGTCCACGTTGTATACCTGCGGCCAAACTGGGACCTGCCTCGTCATATTCAAATTGTGTACGATATACGCTTCCAAATACCACTTTATTGCAAATTTGGTCGGAAAGAAATTTACGGCGGCCCATATTTACCGCATTGTCCCCTCTATACATGCGTGTCATGTATCCGGCATTGCCCCATATTGTGTATTACAGACCGAAACATACGGGTTTATATGTACTTTTACCATATATTCTCGAGTATTTATACGGGGACGATTCGGAATGTTTATTACCTCTGCAACATCTGGCTGTGGAGCCGCGGTGTTCAGTGTTCGTACCTTTTCAGCCGAAATGCCGTACATATGTCAAGCAATTTCTTCAAAACTATACTCATACTTGTATATATTCGCAAGTGGTATACATCGCATCAGCGCATTTACATTGTTACGTATATTATTCATATCAAACAAGTTATATATGCGCTCGCGCTCTCTATTACAGCCAAGAGTGCGTGTTTGGCCTTTCGGCGATACTATTTTGTGTATATGTTTGTTTTGCTCCTCTTGGTATGTGCTTTCCACGAAGGAAATCACGTCTTGCAGTGTTTTACGAAGTGTATATACTGCATTCATTCCAATTCCCGCAGTTATATTGGGTTTATCGTCTCTGTTCTCGCTATTATGTTTATCTCCACCAAAAGTATTTTCATTGTACATCATCACTGTTTTACAACTACGGATATTTATGTTACATCGGAGAGCCTGTATACCGTGGGTATACAAGTGTTCGAATCGCGTGGGAGTATTTTGTTCGCGAGCAACTACCGTTTCATTATACTTTTTCATGTTATGCTGTACTCCGGGCATATCTGTGTGCTGTACCGGATCATTTCCCAGTATTTTTCTTGTGCCGTATACTACTTTATACTCGGGGGAGCCGCTTTCAAGGTTTGGGTATACAAGAGGATCATATACCTCATTATTCTCTATTCTTACGTCACGCAAATATTACAGTGCAAGTGCAAACGGCATGTGTGGCTCCTTATTGTACCGGGACATATACTTTTGTATGTACTGTTCTTCTGTTTCAAGATACATGGGATGGTCGGTATGTTCATGTACAACTTCCATGGCAGAGTCTGCCAGAGTGTGGGAGCCTCTATTGTTCCCGTCAATCACTGCAACCAATCGCTTTCGCACAATATCGCTCGTATTATTTTGTGCGTCTCCTACGGGCATATGCGTATCATTGGGACGAAATACGCCGCCAATTCCTCGCATCGCCGCCTGTCCGACGGATATCCCTGTCATACGAACATTATTATTATTATTATACTATATATCGGAATTTACAAGCTCCACCTGGCTGTTATGTATATTATACATTTTGTTATATACTGGAAGATTACCTCTATATTTTTCTTTATGGTATATACGAATTTCTGTTATCGTGGAAATATGTTGTTGTCTCAGGCCTTGGCGATTGGTATCCTTATTATGCCGCTGTACCATGTGTCCCAAGGACAAAAGGAGCACCGACTGCTCTGTGGGGTCGCCCCTATGTCCAAAGGCGATATTATTACGTGCTACGTCAGGGTGTGCATATCCCATCTCCATCACTGCTTGGCTATACTTCCCATTACCAAATGCATTGTTATGTTTTACATATATTTTTCCGCTGGGAGCATCATACAACCGGGCAATGTACGAAGCTACGAGCTGGTTGTACACCATCATCATGCTACGATTATTTCGAATGCCATACTCTGTTCCATATACACGATATCGTCGAAGATTGTTTGCGGCGTCATTGGCGTTGGCATATGTTCTGTGCGCTATGTTGTCCCAGTACCTATGTGTATTTTCCTCCTGGGCGTTGTTGGTACGAATATGTTTGGAGAGTCTATACTCTCCTACTGCCACTTGTTCGACATGGAGCCCAGAGTTGTCATCCAAGGCATCATACAATATATGTCTGCTTATTACTCTTCCGTTTTATTATTATTTTGGTTATTCCCCTCCAGGCCTATTTCACTGCCAGGTACTGGCCTTCCTCCAGCATCAGTGGGTGGTTTATGTACCCTGTCAATTATATGCTCCTCTACCCAGTACAATGTGCCAGGATTGGATCTATTTTCGTACTATTGTATATTGTTTTTATCAATATGCGGACGTACAAGATCAAGAAAATACTTCGTGTCGGCCATCAAAGAATCAATTATGGAAATATGTCCTGTACAATCTATGTGCACATGTGCAGTGCTACTTCCAGGAAATCGAACTTGTACCAATTTGTTACAACTGGAAGTCATTTCAAAGATATTGGTCAGTACGAGCTGCATATTTCGTCTGTGGTTACATTTCTATCTACAGGTGCAGTCGCGTCAGTGGTACGATCAGGATACACCTCAGAAAGCCGCATATTGTTTTCTTTATTGTCTATTCCTGGATTTCTATTCTCAGAGATGGCCCCGTGTTTTCTTCCGAGCCAGTCAATATGTTTGGCGCGGTTCACGTTGGCGGCTTGTGTCTCTCGTATCCATTCGATGTTACTTTTTTGTATTGTATCTACATCCAAACCTTTATTATTATTACGAAAGTTATTATGGAGTACGTATATACCACTCAATATGTTATGTCCTGTATTATCGGTTTCATGCAACAGAAATATTTTGTTATCATCTGTATCTGTTACTGTGTCAGAGCCCTGTATATGTTTTGTATCAATTTGTATTTTATCAGTGTGCGTCTTTTTATGTTCATTTGTGGCCTGCTGTATGTGTTCTTGGTACGAAATTTTGCCCAATTCTTGTTGTACACTGGGATCTTCAAACATCTCACTATGCTGTTTCCTATATTTTTGTACCAAGTCCCACTGGGAGTTGGGTTGCAGCATTCCTGTTTGGACATCCACAGAGTCTATATTGTATACTGCCGGACGCCACTTGGGGGTACGCTGGGATGTACGACTATTATACCTATCGGAGGGAAGTATGTGCGAGGATTGTGTATACCCGTCCTCATCAGGAAGAATGGAGTACTTGGTTTGTTTCATCATTCCAAAGTCATTCATACTTCGCGCTTCCTGTACAATGCGTTGCAATTTTTCCCATTCGGTGCGTGTATTGTCACCGAATCTGCGGTTTATTTCATTTACAAAATGGATATGCGCTTTTTTGGTTGCTTCTTGTTCGCCATACTCTATGTTATACTGTTGGTATATGTCGTTTATTTCTTTGTTATGCTGTCGAATTTCGGTTTCTGTGTACTCACCAATGTTATTATGCTCAGTACGACGCATATACATATTGCGAATATGTCCCGAGAAGATTCCTTCCAGCTCAGGAAGCATCGAGATCTGTACGTTTTCATCTCTGTACGAAAACAGTTTTTGTTATATCTCGGCGAGGCGGGGAAGGCGGAAGTATACCCCCGCTGCCTCGGGAATTACCTCGGGCTCTACCTCATCGGCACCTCCCAGTATCATACGCGTGGGTATATGTTTATATACAGGCTCGGGTCGTTCAAACATATCGTATATGCCTATTACAATACAAATCTTACCGGCCATACTTTTTACCATATACGTGTACAAGACGTCCTCGGTTTCCCAGCGGGTTGTTACGGCGTCGTTATCTCTCACAGTACAGAGGTACACCCGCTGTGCCGCCTCCTCGGGAGTTCGTGCAAGCGCTACCCTTTGCCCTCCAATTTCTGTTTGTTTTACATTTTTATGTCCCACGGAAAGCGCAGAATGTTGTATATATTCAAGCAAGGTTTTATACATCTGCAGGGGCGACATGGGCACCATTTGCCGCAGCTCTTCTCCCCCAAGCATGTCTCCAATCCGGGCAAAGGCATTGTTGTTATTTTTATGCGCCTGCAAGTTGGAAAGAGAACGCCCGATATGGTCGCGAATGTTTTTACCCTGGCTTGCTCTATCAGGACGGAGGGTACCAACGCTTCGGCCTTGTTGGATTTCAGCCGCAACTTTTTCGTACTACTGGCCCGCGGGAGCATTATCCGTATACACGTTGGAGTCATTGCCTGCAGAGGTGGGAAAACTTTCAAAGACTTGTGCAAGCGTGTCCCCTGTTGCCTCGGTGTACCATCGTCCTATATTGCGCACGCCATCCAGCATCTGCTGGACTGTTTGTATACAATCTATGTTGTTTACAAACGTTTTGGTATTATTTTTATGTTATACGTCTACCCCTTCCAGAGCTCGATACAATCGGCGTTTTACATCATACTCCAGCTCGATGGCGCTTACAGCTGCCTTCCAGTCTGCTTCCTGGGCACCTCCAGGGTTTGGGCCTACGTGTCCTCTGGCAAGATCTACAGCCGGAGAATTATTGCGTGCATTTTTTTCCGTATCCAACTGCATGTGGCGTCCCGCAATACCATCTCCGAGAATACTGGCATACTTTTCCTCGTACGATTGCAACTCCTGTTTGTTATGCGTTATATTGGAGTATATCTGGGCCACATACTACTATTACATACAAGTATTATTTGCCTGGTTGTGGTCAACCTGCGACCGCGCGGCCTTGCTGTGTCCAAGCTCTTCAACCGTGTGGGCAGCACCGCCTACCCTTGTGCACTCGCAGTCCTCCCCGCCTCCATACTTTTTTTGCACAATATCGGTATACAAATCAATATTCTGCAGCAAGCGAGAGCAGGAGTCATACAGATTTTTACAATTACGGTCGGTTTTACATATCTCCTCTACAACATTTTTATCAAGCGTACGCTGTGTTACAAAGGTTTCGCGTTCTTCTCGTGCGGCTGCGTTGGTGTACAAGCCGATATGTCTTACATCAAGCGCGATGGTGCCCATATCATTATTGCGCGAAAGAGCATCTCGAAGCCTCGTTATGTTCGGCGTCAAGGCAATTTCCTTATCAAGTTTGTTGCCTATTTTTTTCACATTTTCCAAAAAGTCGTTATACGCCTGTGTACTTTTGTTCAAAAATTCCATGTGGATATGCTTTCTATCCAGCCTTTGCGCTTCAATCCTCCTATCTACTGGCGTTTTCTCCTCGTCGCAATACGTTCACGGCTTTTTCAAACTCGGCAATGTTTTCTGCGGAGACAAGGCCACTATATCTTTTGTGGTCAAGCTCTTTGTCAAACTCCGCCCAGTTTTTGCTTTGTACATACTGTTCAACCTTGTGTCCTACTTTCTGGAGAGCTTTATTATTTTTATTCGCAACAGATGCAGCAATGCCTACATTACAAAGTGTGTACGAAAGCACTTTTCCAAAATTTTTGGTTCCTATGTCACTATTTGTGTCATTTACAAGCTTATTATTATCCACCTCATCCGTCTGCAGTTTATCAAGTTCCTTTTGGGTGGGAGTTACAATATTGTCAATACAATTCGTTACAATGTTGTTTTGTACGTTTTGTTCATTTACAAGTCGACGATATACTGCTTCAATCATGGTGTCTGCATTATTGTCTTCTTCATTGGGGGCTGCTTTGGTTACCTCCGTCACCATGCGCTCGTGTACTTGCTTATTGGCGTCGTTTATCAGCTTGTTGTTTTCAAGTGTATTTTCTATACTGCCGTGTACATCAAGATATTCCGCGCGCAGTCCATGTGTTACGGAGTTGTTGTACAGAACTATTTGTCGACATATACTGGCGGCCCCATCGGTGGTATCTATGTGCTTATCCTGTCCTATATCAATATATTCCTGGTTATTGGCGTCTGCAATCATTTTACAGACGGTCTCCTGTTTTTCCGCATTTTTTACAAAGGTGGAACCGGCTCGAGGATCGGGCAGTTGTTTTTTGTTATCTTTATGTATATCTTCGATGGGCTGCTTTGTGTCTACTTTGTATCCTATTTTGGCAATCGCCCTGTTATTTCCTTCTATATTCCGCAGCTTTGCTTTACTCGATACGGAGTCTATGTGTTATTCTTTATTGTGTTGTACAGGATTTTTGTCCCCCCCGCCATTATATTATCCTCCTCCTGCAAAAGGACGAGTTTGTCTTTGTATATGTTCCTGTATCTTCGCATATATATTTGCTTCTGTTGTACGCGGTGGTCTACTACAGGTTGTACATCCACGGTTACCCATTATAATAAAAAAAAATAA
Protein
MRNYTIRISLSYCLSVYVSLGPVLQNPYSVLLGFILWSGLSSTFLYCESSTFTRSRITRCIFVLYITLRMWRVSKRSFPICTMVGFCIPTPTCLSMDQGPSSRFCSVLYVCTLFSVYVVCCRISVWGVLFCIIFIIELACPAFPICSIISILLSPILYGSDVLRGWIVLYFRCLYYIIHFSLCIFKLPHRSRPRCIPAAKLGPASSYSNCVRYTLPNTTLLQIWSERNLRRPIFTALSPLYMRVMYPALPHIVYYRPKHTGLYVLLPYILEYLYGDDSECLLPLQHLAVEPRCSVFVPFQPKCRTYVKQFLQNYTHTCIYSQVVYIASAHLHCYVYYSYQTSYICARALYYSQECVFGLSAILFCVYVCFAPLGMCFPRRKSRLAVFYEVYILHSFQFPQLYWVYRLCSRYYVYLHQKYFHCTSSLFYNYGYLCYIGEPVYRGYTSVRIAWEYFVREQLPFHYTFSCYAVLRAYLCAVPDHFPVFFLCRILLYTRGSRFQGLGIQEDHIPHYSLFLRHANITVQVQTACVAPYCTGTYTFVCTVLLFQDTWDGRYVHVQLPWQSLPECGSLYCSRQSLQPIAFAQYRSYYFVRLLRAYAYHWDEIRRQFLASPPVRRISLSYEHYYYYYTIYRNLQAPPGCYVYYTFCYILEDYLYIFLYGIYEFLLSWKYVVVSGLGDWYPYYAAVPCVPRTKGAPTALWGRPYVQRRYYYVLRQGVHIPSPSLLGYTSHYQMHCYVLHIFFRWEHHTTGQCTKLRAGCTPSSCYDYFECHTLFHIHDIVEDCLRRHWRWHMFCALCCPSTYVYFPPGRCWYEYVWRVYTLLLPLVRHGAQSCHPRHHTIYVCLLLFRFIIILVIPLQAYFTARYWPSSSISGWFMYPVNYMLLYPVQCARIGSIFVLLYIVFINMRTYKIKKILRVGHQRINYGNMSCTIYVHMCSATSRKSNLYQFVTTGSHFKDIGQYELHISSVVTFLSTGAVASVVRSGYTSESRILFSLLSIPGFLFSEMAPCFLPSQSICLARFTLAACVSRIHSMLLFCIVSTSKPLLLLRKLLWSTYIPLNMLCPVLSVSCNRNILLSSVSVTVSEPCICFVSICILSVCVFLCSFVACCMCSWYEILPNSCCTLGSSNISLCCFLYFCTKSHWELGCSIPVWTSTESILYTAGRHLGVRWDVRLLYLSEGSMCEDCVYPSSSGRMEYLVCFIIPKSFILRASCTMRCNFSHSVRVLSPNLRFISFTKWICAFLVASCSPYSMLYCWYMSFISLLCCRISVSVYSPMLLCSVRRIYILRICPEKIPSSSGSIEICTFSSLYENSFCYISARRGRRKYTPAASGITSGSTSSAPPSIIRVGICLYTGSGRSNISYMPITIQILPAILFTIYVYKTSSVSQRVVTASLSLTVQRYTRCAASSGVRASATLCPPISVCFTFLCPTESAECCIYSSKVLYICRGDMGTICRSSSPPSMSPIRAKALLLFLCACKLERERPIWSRMFLPWLALSGRRVPTLRPCWISAATFSYYWPAGALSVYTLESLPAEVGKLSKTCASVSPVASVYHRPILRTPSSICWTVCIQSMLFTNVLVLFLCYTSTPSRARYNRRFTSYSSSMALTAAFQSASWAPPGFGPTCPLARSTAGELLRAFFSVSNCMWRPAIPSPRILAYFSSYDCNSCLLCVILEYIWATYYYYIQVLFAWLWSTCDRAALLCPSSSTVWAAPPTLVHSQSSPPPYFFCTISVYKSIFCSKREQESYRFLQLRSVLHISSTTFLSSVRCVTKVSRSSRAAALVYKPICLTSSAMVPISLLRERASRSLVMFGVKAISLSSLLPIFFTFSKKSLYACVLLFKNSMWICFLSSLCASILLSTGVFSSSQYVHGFFKLGNVFCGDKATISFVVKLFVKLRPVFALYILFNLVSYFLESFIIFIRNRCSNAYITKCVRKHFSKIFGSYVTICVIYKLIIIHLIRLQFIKFLLGGSYNIVNTIRYNVVLYVLFIYKSTIYCFNHGVCIIVFFIGGCFGYLRHHALVYLLIGVVYQLVVFKCIFYTAVYIKIFRAQSMCYGVVVQNYLSTYTGGPIGGIYVLILSYINIFLVIGVCNHFTDGLLFFRIFYKGGTGSRIGQLFFVIFMYIFDGLLCVYFVSYFGNRPVISFYIPQLCFTRYGVYVLFFIVLYRIFVPPAIILSSSCKRTSLSLYMFLYLRIYICFCCTRWSTTGCTSTVTHYNKKKX

Summary

Uniprot
A0A3G1EV45  
EMBL
KX354450    AOO54440.1   
Proteomes
UP000266411   
ProteinModelPortal
A0A3G1EV45  
PDB
6SGB     E-value=6.63516,     Score=74

Ontologies

Subcellular Location

From MSLVP
Capsid

Topology

Length:
2221
Number of predicted TMHs:
21
Exp number of AAs in TMHs:
726.538480000001
Exp number, first 60 AAs:
30.13999
Total prob of N-in:
0.85431
POSSIBLE N-term signal
sequence
Length:
2220
Number of predicted TMHs:
21
Exp number of AAs in TMHs:
726.779440000001
Exp number, first 60 AAs:
30.13999
Total prob of N-in:
0.85431
POSSIBLE N-term signal
sequence
inside
1  -  12
TMhelix
13  -  35
outside
36  -  103
TMhelix
104  -  126
inside
127  -  130
TMhelix
131  -  153
outside
154  -  162
TMhelix
163  -  185
inside
186  -  354
TMhelix
355  -  377
outside
378  -  640
TMhelix
641  -  663
inside
664  -  840
TMhelix
841  -  863
outside
864  -  882
TMhelix
883  -  905
inside
906  -  1046
TMhelix
1047  -  1069
outside
1070  -  1088
TMhelix
1089  -  1111
inside
1112  -  1238
TMhelix
1239  -  1261
outside
1262  -  1807
TMhelix
1808  -  1830
inside
1831  -  1842
TMhelix
1843  -  1865
outside
1866  -  1898
TMhelix
1899  -  1921
inside
1922  -  1941
TMhelix
1942  -  1964
outside
1965  -  1993
TMhelix
1994  -  2016
inside
2017  -  2020
TMhelix
2021  -  2043
outside
2044  -  2070
TMhelix
2071  -  2093
inside
2094  -  2112
TMhelix
2113  -  2135
outside
2136  -  2154
TMhelix
2155  -  2177
inside
2178  -  2183
TMhelix
2184  -  2206
outside
2207  -  2221
inside
1  -  12
TMhelix
13  -  35
outside
36  -  103
TMhelix
104  -  126
inside
127  -  130
TMhelix
131  -  153
outside
154  -  162
TMhelix
163  -  185
inside
186  -  354
TMhelix
355  -  377
outside
378  -  640
TMhelix
641  -  663
inside
664  -  840
TMhelix
841  -  863
outside
864  -  882
TMhelix
883  -  905
inside
906  -  1046
TMhelix
1047  -  1069
outside
1070  -  1088
TMhelix
1089  -  1111
inside
1112  -  1238
TMhelix
1239  -  1261
outside
1262  -  1807
TMhelix
1808  -  1830
inside
1831  -  1842
TMhelix
1843  -  1865
outside
1866  -  1898
TMhelix
1899  -  1921
inside
1922  -  1941
TMhelix
1942  -  1964
outside
1965  -  1993
TMhelix
1994  -  2016
inside
2017  -  2020
TMhelix
2021  -  2043
outside
2044  -  2070
TMhelix
2071  -  2093
inside
2094  -  2112
TMhelix
2113  -  2135
outside
2136  -  2154
TMhelix
2155  -  2177
inside
2178  -  2183
TMhelix
2184  -  2206
outside
2207  -  2220
 
 

Population Genetic Test Statistics

Pi
0.0463491
Theta
0.0523371
Tajima's D
-0.6908021
CLR
0.147326
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014    
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983 Protein
Protein
 QGM12735.1
QGM12735.1
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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