Strain
Zambia_LIV_1983
(Region: Zambia; Strain: LIV_5_40; Date: 1983)
Gene
pM1249L
Description
Annotated in NCBI,
M1249L
Location
GenBank Accession
Sequence
CDS
ATGTTATCCAACACATCTATACAAATGTCAACATCCTCGATGCTACAAGGGTCATCGAGCCGGTCAATATTGTCTTCCCCAAAAAGTCCGGGAGAACTGTACGCCGAGATGTCATCCATGGAGCTATCTTCCCCAGAGCACACAAAGTCCTCCCCAAAAATCATATACTTATATGCACCGGGCTTACTTATCAGCTTTTCGCTTTGTATATTACTGTTGTGCTCTGTCAGCGCAAATTCTCTCACAATATTCACAACCCAGGAAGGCTCTTTATTTTCATACAGCGTTATGCAACTTACACATACAAATTCTATACAGTATACCAGGGCGCTGGCAGGATCTGTTACCCGTACGTGTTTATATGTACTGTGTTATTCATTCACGACGTTACGCAGCACCTTTTCCAAATCCTCCTTTTCCTCATACGACAGGTGCTTTACAAGCCTTTCAACATGCATACGAGGCTTGTTATATGTACTATCATGCCGCAAACAGTTATATTTATATATGCAAATACGTACGGCAGAGTCGACCGCCATGTGCCTTGGATCATCCATTGTGGTACGTGGTGGCGGGGCACCCTGGCCTTCCCTGTTGTCTGCGTACGAGCGCCCCTCCATGGCTCCTATGGCCTCTATCACAGCAGGACTGTTATCCAAAATCTTGGCCGTCTTGTTTATTTTTCCGTATTCGAAAGTCCATGGCTCCTGTGGAGGCTTGGGTTGTGTTTCGGTGGAGGGCGTGGTCATATCTTTCTTTATTTGCATACAACGGATCGACATCTTTTCCTTATCGTACTGTTCTTTATATTTATTATATTACTCATGTACTATTTCGGGTTGTGCAAGATGTTCGTATATATTATACGTACAAAGTCCGCACTTGTCACATTTTTTATCCTGGAAGTCGTGTATTCCCCCCTTGGGGCAGCGTGTCTCGTACAAGGCATACAAGGTGTTATATTCTATGCTCGCTTTTACGGCTGTTTGGACCTTTTTTATGTTTATTTGCCCCACCTCATGTTGTACCACGTGGCATACAGAACAGCGTACATCGGCAAGCGCATATTGGTTGTCAATTTTTTTTATGTCGTCTTTGCGTGTTACTTCAATCTCGGCGGGTTTCTGCGAACTATCTACGGCTTTGTATACGTATATGGTCCACTTATGTGGAAGCCCTCTTTCATCGTATACGGTTGTATTGGGAAGTCTTTTATACTCAAACAGCCGAGTCCGTTGGTCGGCCCTTCCTGTGTTACGATCAAATATGTTATACAATCCTTGCTGTGCAAGCAGGGCCTTTTGTTCGCCATATGCATTTTCGTACGTTTTGTATTCTGCAAGTTCGGAGTTACAATTACGTGCATTTTGTATATACTTATGCAATATTTCATACGCTCTATGGTATATGTGTGTTGCGGTTTTTTCCTCATCCCGTCCTCCCCACCACACCCGCAGGCTTTCTTCTTGCAAATACATGTCCTTCAGACGCGCCAACTGCGTATATTCAGGCCGATATTTACAGGTATATATTTTATCATACAATTCTTTTTGCGATATTACCTCGGCCGGAGTACGTCCTATCACGGTTTTACACTCATATTCAGCCTCCTTGGGAGTCCGTGGCTTGTGCATACGGATGCTGCCGTCAATACGGGCCACTGTGGCAGCATATTCATACATGGGGTCCAGCAGAATCTCTGTCAAAAGTACCTTGGTGTCGTCCTGCACGCTATGCCCTTGTACTCCGTTCTGTTGGATATTTTTTTTGCAAGCCTCCCGAAAATTATTACCAATCCACTGTTCCGTATTCTCAGATACCTGTTTTATTATACCGCTATATTGCTGCATCATTTTCTCCAAAAGAAAGGTCACGTATGCATTCAAAGAGCTATCCGCCTTCATTCCATGCATGGTATTCGTATGCAATTCTTTATTTTTTTGCGAGCTATATATGCGATTCAAAATATACGCATACATGTACATCACAGCATACAGCTGCGTTATACGATCGTATTCCTCCTCCTTTTTATTATTTTCGATGCTATACACGAGCGGCAGGCAGACATTTACGGCTATATTGGCAAACTGTTTCACGTCTACAAGCTTTCCAAAGTGGATATACGTGCAGGCCTTCATGGTTTCCTGCCAAATACAAATACGGAGCTTACTATTATGTTCGCCGATGTCGCCCACATCTGCCGTACGATCCTCTTGCATACAATGGGCCAGCTCTTCGCCACAAATTTTGCAAAAGTACGAGTACATATGCCCCTGGTTGTTTTCTTTCTCCTTGTTTATTCCTGCAAATTTCATTACCTTGGTTCGCATGGTGTCGTACGACGCTTCTGCCGCTTGCAGCTGTATATGCATGTCCACATGGGGGCAAAGCAGCTTATACCCGCAGGCTTTGCATACATTCCAATTGGTGGTATTGTTTTTTTCCTTGTACAGTACACGAATACTTTCTATTACTTTTATTATCTCCGCGTATTGCAGACCCGAACGTATCTGTTTTACCAGCTTGTGCTGCGCACATGCATTTTTTTCTTGGAGTTCCCACTGTTTTTTATTGTTTACGTATTCTGTTGTATTATGTTCTGCCTCCTGTTTCCCACAGGCTTTATTATCTTCTTGTACGATACTGTTACGGTCATCCACTTTACCCTCCATTGTATGTATTTCACGTATACCATCCGACTGCACCCTACCTATTTTTTCTTCCATATTTTTACAATACTGTCTCGCCTGGGTATTGTCCTCCGTGTGCTTCATGTCCACCTGCTGCAGAATCATTTGCTCCTTTTCACGCTGTTCAGCATGTTGTACAAACTTTTGTTCTACAGGGTTCCAAAGCACCTCCAAATACCCTGCTCTATATACGTCATACAGCAAGGGCATGTATCCCGATGTACAAACCGGGGACACCGAGTACATCGTACACAACTCTTTTACAAAAAATATCACGCGCTTACTGTTCTCCTCCGGTTCAATCTCCTCGGTTTCAACGATATTACATATATGTCTGCCCTGTTCCTCACGGTCTACCTTTCGGTGTACCATCTCCTCTGCTACCCGATTATTGTGCCAGCTATGCCCGCCGCTCCGCAAAAACTTATATACTTCGATATACTGGTGCGTATACTGGATGCAGTTTTCCTTGGTGGTTACGACAACCCCTTCTCCGTTTTTTTTCCAGGTTTCTTGTTCCACGCATTTCATATATACTCGAATACAATTGGTCAAATTGGCTCCTGTGGCGACGTACCCCAAGGTTTCAGGCGAGAAGGAGCCTATCTCAGCCATACGCATATACCACTGCGGGGAAAAAGTTTTTACCCGCAACTTATGTCCATACATTTCAATGGGGGCTTCTGCGGGAACGGCCAGGTGCGTCCCATTATTTACAAAAATTTCTTTGCGTGTGCTACGGCGAACACGTATTTCCTTTTTTTTTTCACTCACGATGGGGAGCACATCGGGGTCTACCAGCAGTTGTCGTATGTACGCCTCCATGGGCATGGATACATCGGGCAGCTTTGTCTGCTCGGCGCGAACATGGTTCACAAAATCTTTTACAGTGCAAAGAAAGTCTATTATACGTATGTTTTTTATATCATTACACCCTTTACGGGTACAGTACATTTCATCCACTACTGCCTCGATTTCCTCATTATTGTGCGATATGTTATCTGTGCCACGGTGGACAATTTGCGCGATCGTATTTACTTCCTCCATTACATAG
Protein
MLSNTSIQMSTSSMLQGSSSRSILSSPKSPGELYAEMSSMELSSPEHTKSSPKIIYLYAPGLLISFSLCILLLCSVSANSLTIFTTQEGSLFSYSVMQLTHTNSIQYTRALAGSVTRTCLYVLCYSFTTLRSTFSKSSFSSYDRCFTSLSTCIRGLLYVLSCRKQLYLYMQIRTAESTAMCLGSSIVVRGGGAPWPSLLSAYERPSMAPMASITAGLLSKILAVLFIFPYSKVHGSCGGLGCVSVEGVVISFFICIQRIDIFSLSYCSLYLLYYSCTISGCARCSYILYVQSPHLSHFLSWKSCIPPLGQRVSYKAYKVLYSMLAFTAVWTFFMFICPTSCCTTWHTEQRTSASAYWLSIFFMSSLRVTSISAGFCELSTALYTYMVHLCGSPLSSYTVVLGSLLYSNSRVRWSALPVLRSNMLYNPCCASRAFCSPYAFSYVLYSASSELQLRAFCIYLCNISYALWYMCVAVFSSSRPPHHTRRLSSCKYMSFRRANCVYSGRYLQVYILSYNSFCDITSAGVRPITVLHSYSASLGVRGLCIRMLPSIRATVAAYSYMGSSRISVKSTLVSSCTLCPCTPFCWIFFLQASRKLLPIHCSVFSDTCFIIPLYCCIIFSKRKVTYAFKELSAFIPCMVFVCNSLFFCELYMRFKIYAYMYITAYSCVIRSYSSSFLLFSMLYTSGRQTFTAILANCFTSTSFPKWIYVQAFMVSCQIQIRSLLLCSPMSPTSAVRSSCIQWASSSPQILQKYEYICPWLFSFSLFIPANFITLVRMVSYDASAACSCICMSTWGQSSLYPQALHTFQLVVLFFSLYSTRILSITFIISAYCRPERICFTSLCCAHAFFSWSSHCFLLFTYSVVLCSASCFPQALLSSCTILLRSSTLPSIVCISRIPSDCTLPIFSSIFLQYCLAWVLSSVCFMSTCCRIICSFSRCSACCTNFCSTGFQSTSKYPALYTSYSKGMYPDVQTGDTEYIVHNSFTKNITRLLFSSGSISSVSTILHICLPCSSRSTFRCTISSATRLLCQLCPPLRKNLYTSIYWCVYWMQFSLVVTTTPSPFFFQVSCSTHFIYTRIQLVKLAPVATYPKVSGEKEPISAIRIYHCGEKVFTRNLCPYISMGASAGTARCVPLFTKISLRVLRRTRISFFFSLTMGSTSGSTSSCRMYASMGMDTSGSFVCSARTWFTKSFTVQRKSIIRMFFISLHPLRVQYISSTTASISSLLCDMLSVPRWTICAIVFTSSITX
Summary
Uniprot
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Capsid
Topology
Length:
1248
Number of predicted TMHs:
16
Exp number of AAs in TMHs:
396.453939999999
Exp number, first 60 AAs:
6.03786
Total prob of N-in:
0.17773
Length:
1247
Number of predicted TMHs:
16
Exp number of AAs in TMHs:
396.397039999999
Exp number, first 60 AAs:
6.03786
Total prob of N-in:
0.17773
outside
1 - 53
TMhelix
54 - 76
inside
77 - 207
TMhelix
208 - 230
outside
231 - 233
TMhelix
234 - 256
inside
257 - 268
TMhelix
269 - 291
outside
292 - 318
TMhelix
319 - 341
inside
342 - 352
TMhelix
353 - 375
outside
376 - 384
TMhelix
385 - 407
inside
408 - 427
TMhelix
428 - 445
outside
446 - 454
TMhelix
455 - 477
inside
478 - 569
TMhelix
570 - 592
outside
593 - 595
TMhelix
596 - 618
inside
619 - 630
TMhelix
631 - 653
outside
654 - 656
TMhelix
657 - 679
inside
680 - 755
TMhelix
756 - 778
outside
779 - 809
TMhelix
810 - 832
inside
833 - 852
TMhelix
853 - 875
outside
876 - 1248
outside
1 - 53
TMhelix
54 - 76
inside
77 - 207
TMhelix
208 - 230
outside
231 - 233
TMhelix
234 - 256
inside
257 - 268
TMhelix
269 - 291
outside
292 - 318
TMhelix
319 - 341
inside
342 - 352
TMhelix
353 - 375
outside
376 - 384
TMhelix
385 - 407
inside
408 - 427
TMhelix
428 - 445
outside
446 - 454
TMhelix
455 - 477
inside
478 - 569
TMhelix
570 - 592
outside
593 - 595
TMhelix
596 - 618
inside
619 - 630
TMhelix
631 - 653
outside
654 - 656
TMhelix
657 - 679
inside
680 - 755
TMhelix
756 - 778
outside
779 - 809
TMhelix
810 - 832
inside
833 - 852
TMhelix
853 - 875
outside
876 - 1247
Population Genetic Test Statistics
Pi
0.0281823
Theta
0.0409595
Tajima's D
-1.0425652
CLR
0
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 | |||
| China_ASFV-SY18_2018 | |||
| Poland_Pol16_20186_o7_2016-2017 | |||
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 | |||
| Poland_Pol17_03029_C201_2016-2017 | |||
| Poland_Pol17_04461_C210_2016-2017 | |||
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 | |||
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 | |||
| Portugal_OURT_88.3_1988 | |||
| Spain_E75_1975 | |||
| Russia_Georgia_2007 | |||
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 | |||
| Russia_Kashino_2013 | |||
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 | |||
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 | |||
| China_LN_2018 | |||
| China_wbBS01_2018 | |||
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 | |||
| Lithuania_LT14_2014 | |||
| South_Africa_1985 |
Protein |
QGM12722.1 |
|
| South_Africa_2_2008 |
Protein |
QGM12722.1 |
|
| Zambia_LIV_1983 |
Protein Protein |
QGM12722.1 QGM12722.1 |
