Strain
Zambia_LIV_1983
(Region: Zambia; Strain: LIV_5_40; Date: 1983)
Gene
pEP1242L
Description
Annotated in NCBI,
EP1242L
Location
GenBank Accession
Sequence
CDS
ATGTTACGCTGGTTGCAAAATCATGTTATGCCGGTTGCAATACTCTTTGTATTATTATCATTGGCCGCCCGCATTTCGTGTTGCAATACGATGGAAGAGCGACGGCTATCTACCATGCCGATATCGGCCTGGACATCACAGTTCATGCACTTGTACATGGGATGTCTCGCGTTATACATGGCACACAGTTTCTACAGATGTACGAGATGCAGCCATCTGTGTCGTCGTGCGATTTTTCTATGTTGGTTTGCATGGCGCCCTGCGCCGTATGCACCCAATGCTCCATTTCTCCCAGACGAAGACCTCCGTGCGATCGTTTGCCGTCCAACGGCTGGCCTGTGTGGGCATCCGTGGGCCCATACCTTGCAACGGCGTATCGGTCATCCAGCACAAATTTTTGCAGGCGCTGGTGTTACGTCGGTCCTATGCAGATGGCCGCATCAAAGTACTCGCCGGTCTGGCCGTTGCACATTTTTTGGCATCCATTGCAGCGTACACCTTCTTGCGCCAGTCTTTCTGCAAGAAGCTGCACGTTATTACGTACGAATGCGGTGCCGTCTGTTACCACCCCCTGTACAGCATTTGCTACACCAACCGTGGTTTCTATCATTTGTCCGTTGGTCATTCGGGAGGGATGTGTGTGGGGGTTTACAATGTGGTCGGGCTGCAGTCCGTCCTCTGTGTACGGCATGTCTGTACTGGGCAGGGCCAGCGCCGCAATGCCCTTGTTCCCGCTGCGAGAACTCATCTTGTCGCCTATATTGTGTTTTCTTTCATACCGCAAGCGCATGTGGCCAAAGATCTCGTCATTACGCCCATGGGGACGCATCACAGCATCCACGACGGCCGGCTCATCGAAGCCGTACATGTCAGACCGGTCGATGTATTTGTTGTGTTCGTCTTTTTCGCCCCGTATTTTGGCCACTTTTCCTATGTTGTTGTCGCCCTTTTTGTCTACTGTTCCCACGGGCACAAACCCATCTACAAGCTTTTCGTATTTGGCACCAGGCTTATGTTTTTTGGTGTTTATACGGTCGGGCTTTCCAAACGACTCTATATCGCTTTCTATTTCTACTTTTTCTTCTCGGTACAAGGTGCCGGCAAAGCCGCCCCTGTCAATATACGATTGCGACACGATCACAGAGTCCTCCTGTTTGTACCCGCCGTACATCATATACGCCACAATGGTATTACGCCCGTTGGGTATGTCATACTTATGTGCTATGGTCTTTACAAGCGGCATTTCATTGTACAACTGGAAGAAACGGTTCATGTCGACACGATATGGCCAGCTATACCAATACCAGCCCCCCGTTTGTCGGCCTTGGTTTGTTTCATACGTATCACGCGCAGGTTGGGTACAGTTTGCGTACGGGGACACTACGGCGGCAAGGCCCAAAATACCTTGGGGCACGTCCACGTGTGTGCAACGACGCGTTACATCATGTTTGTACTTGCGTACCTCGATGTTGGAGAAGGCAACAAGACAGTTTTCCGCTTCTTCGGGGGTATTGTACTCACAGATGCCCTGCGCTACGAGATCTTCAAGTGTATGCGTTCCGGCTACAATGTCTTTTGCCATTTGTGTCGTATATCGCGTATTTTGTATGCAAGGGATTTTATGTTTTTCCCAGTCTTTATCGCCTTTTTTTCTGGCTTCTGCGGCCTTGTACCAGGCTTGTTTGTATTTTTCAATATTATTATCTACAATGTGTACGGGGCGGGTCAGCCTGCCGACGTCCAACCAGAATTCTACTTCGTCTACCATGCTATCCCAGTACATGGTGGTATGGGGATGCACAATCTTGCCCTCACGGCGAAGCATTCTATACCGCTGTGCAAGCTCAAAGGCGTTGGTGCAGCAGCCAATCCATTCTCCATTGTTATATACGCGCGCTACGCCCTTTCGTACAATGTCCTTGTTGGAAACATCGGCTATCTGTTGCATGGCCGGATCTGTTACAAGGCGTTGTTTTATCGAAAGTACTTCTCCAGCGGTACAGACATTGGCGGTATTGGCTATCTGTTTGGACATACCTACTTTTTCACCAGTATCGGCTGTCTGGGCTACGCAGATGTATCCAGGATATGTTGCGTGCACGCGACGCATCATGTCAGCCCTTTCTGTTTGTTTGGATGCGTTGGTGGTGTTATGTGTATTTACCGTACGCAACGCTGCAATCGTGTTTATTATATTTTTTCTTTCCAAACTTTGTGTACATACTCTGTTTACAATGGGGCGCTGTCGCACCATGTTGGTTTTATTTCCTGCAATGTTACACTGTTCCATACTGCGATTGTGTTCGGAGGCGGTATTTTTTGCTATACCGGCAGAAAATGCCTCGATATTGTTTCGCTGGGTATGCTCCTCAAAGGCTGTTTGTTTATGTACTTCTTTGCACCCATTGTTGTTGGGTGCTATCACGGATGTACTACAAATACCCTTATACGCCTTACCAAGCGATACCCCTGTGCCGTGCACTCGCTTGGTGCGATATCTATCACGGTCCGTGGGTGGAAACACATTCATATTGCCAAGAAGTATTTTATGCATATGCAGGCCTACAAAGCGTACTTTTCGTACACGTGTATCTGCGGTTTGGCCCATGTGTGGCAGCAATATTTTGTCTACAATACTACGTTGTCTTTCATTCAAGTATTGTACCGCATTTTCATCGCTTTTGTACGCAGATGGGTTTGTGTCAAATTTGGAAACCTTCTCAGATACAAACTGGATATTTTTTTCTCGGTTCAGCTCGTGTTGGACCGGTTGCAATATGGGGTCTACAACATGCATGGATTTTTCCAGAATTTCTATCATGTACGTATTCACAGGGGAGTTGGATTCCAGATCGAATACCACTTGCTCAATGTTGCTGTCATCGCCTGTCATTCCAAACATGCGAAAGATGTGTTACCAAGGTATGCGAAGTTTTGTGCACTTGGTGCTATTGTTTTCAATGGTATTGGCGCCGGTGGTCATGTACCGTATATTATTTTGTGTGCTATTTTCGAAGGCACCTCCTGGTTGTGTGTTATACTCGCCGCGAATGTTTTCATTATTCCCTTGTTGCATGGTATGGTATTGGATGTGCAGCGTGTTATACCGGATGTTTTCTATGCGGTCTACGACCCATTCCCCACCTCGGGCTATATACTACCCGCCGGGTTCATTACGGTCTTCTCCTATTTCTTTTTTTGCGGTTTTTGTTACGTGTTGTGTGTGGCAGCGGTTGCTGCCCCGCATGTTGGGAAATGTGGACACCTGCAATGGAGGAATACTTGCTCGTTTTACCTCCTGCCGACCATTGCTGTACTGCGCCGTTACAATATCCTCGGCGGCTACATTATCAGGGCCCGAATACGAAAGGCCACACAGGCGTGCCTTATTACGTACTATATTTATCTTGTTTCCCTGCGAATACTTTCGATGTTGCGGGCGTTCAATGTTCACATCTGTATACTTATATTGGATCTGCACCGATTCCCGAAGCTTATCTATTTCAGTATGGTCGCGTTGGTCTTTATACGTATTATCCACGTTATACATTTGTTTTACAATTTGCGGAATTCCATTGTCCATATGTTCGTCAAAGCTTTTGTTGTTATACCCTATCAATCCGGTACAGTTTACTGCGGCGGAGATATACCTCAGCATATCAGCCTCTGTATGCTCCTCATTATCCACGGTTTCAATGGGGCCGTACGTTATTTGCGGCCGCAAGGGTTCCATGTTTATGA
Protein
MLRWLQNHVMPVAILFVLLSLAARISCCNTMEERRLSTMPISAWTSQFMHLYMGCLALYMAHSFYRCTRCSHLCRRAIFLCWFAWRPAPYAPNAPFLPDEDLRAIVCRPTAGLCGHPWAHTLQRRIGHPAQIFAGAGVTSVLCRWPHQSTRRSGRCTFFGIHCSVHLLAPVFLQEAARYYVRMRCRLLPPPVQHLLHQPWFLSFVRWSFGRDVCGGLQCGRAAVRPLCTACLYWAGPAPQCPCSRCENSSCRLYCVFFHTASACGQRSRHYAHGDASQHPRRPAHRSRTCQTGRCICCVRLFRPVFWPLFLCCCRPFCLLFPRAQTHLQAFRIWHQAYVFWCLYGRAFQTTLYRFLFLLFLLGTRCRQSRPCQYTIATRSQSPPVCTRRTSYTPQWYYARWVCHTYVLWSLQAAFHCTTGRNGSCRHDMASYTNTSPPFVGLGLFHTYHAQVGYSLRTGTLRRQGPKYLGARPRVCNDALHHVCTCVPRCWRRQQDSFPLLRGYCTHRCPALRDLQVYAFRLQCLLPFVSYIAYFVCKGFYVFPSLYRLFFWLLRPCTRLVCIFQYYYLQCVRGGSACRRPTRILLRLPCYPSTWWYGDAQSCPHGEAFYTAVQAQRRWCSSQSILHCYIRALRPFVQCPCWKHRLSVAWPDLLQGVVLSKVLLQRYRHWRYWLSVWTYLLFHQYRLSGLRRCIQDMLRARDASCQPFLFVWMRWWCYVYLPYATLQSCLLYFFFPNFVYILCLQWGAVAPCWFYFLQCYTVPYCDCVRRRYFLLYRQKMPRYCFAGYAPQRLFVYVLLCTHCCWVLSRMYYKYPYTPYQAIPLCRALAWCDIYHGPWVETHSYCQEVFYAYAGLQSVLFVHVYLRFGPCVAAIFCLQYYVVFHSSIVPHFHRFCTQMGLCQIWKPSQIQTGYFFLGSARVGPVAIWGLQHAWIFPEFLSCTYSQGSWIPDRIPLAQCCCHRLSFQTCERCVTKVCEVLCTWCYCFQWYWRRWSCTVYYFVCYFRRHLLVVCYTRRECFHYSLVAWYGIGCAACYTGCFLCGLRPIPHLGLYTTRRVHYGLLLFLFLRFLLRVVCGSGCCPACWEMWTPAMEEYLLVLPPADHCCTAPLQYPRRLHYQGPNTKGHTGVPYYVLYLSCFPANTFDVAGVQCSHLYTYIGSAPIPEAYLFQYGRVGLYTYYPRYTFVLQFAEFHCPYVRQSFCCYTLSIRYSLLRRRYTSAYQPLYAPHYPRFQWGRTLFAAARVPCLX
Summary
Uniprot
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Capsid
Topology
Length:
1247
Number of predicted TMHs:
8
Exp number of AAs in TMHs:
223.71511
Exp number, first 60 AAs:
34.08152
Total prob of N-in:
0.41113
POSSIBLE N-term signal
sequence
Length:
1246
Number of predicted TMHs:
8
Exp number of AAs in TMHs:
223.73404
Exp number, first 60 AAs:
34.08152
Total prob of N-in:
0.41113
POSSIBLE N-term signal
sequence
outside
1 - 9
TMhelix
10 - 27
inside
28 - 47
TMhelix
48 - 65
outside
66 - 528
TMhelix
529 - 551
inside
552 - 714
TMhelix
715 - 734
outside
735 - 737
TMhelix
738 - 757
inside
758 - 792
TMhelix
793 - 812
outside
813 - 860
TMhelix
861 - 883
inside
884 - 1023
TMhelix
1024 - 1046
outside
1047 - 1247
outside
1 - 9
TMhelix
10 - 27
inside
28 - 47
TMhelix
48 - 65
outside
66 - 528
TMhelix
529 - 551
inside
552 - 714
TMhelix
715 - 734
outside
735 - 737
TMhelix
738 - 757
inside
758 - 792
TMhelix
793 - 812
outside
813 - 860
TMhelix
861 - 883
inside
884 - 1023
TMhelix
1024 - 1046
outside
1047 - 1246
Population Genetic Test Statistics
Pi
0.0362933
Theta
0.0466483
Tajima's D
-0.9656958
CLR
0.054542
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 | |||
| China_ASFV-SY18_2018 | |||
| Poland_Pol16_20186_o7_2016-2017 | |||
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 | |||
| Poland_Pol17_03029_C201_2016-2017 | |||
| Poland_Pol17_04461_C210_2016-2017 | |||
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 | |||
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 | |||
| Portugal_OURT_88.3_1988 | |||
| Spain_E75_1975 | |||
| Russia_Georgia_2007 | |||
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 | |||
| Russia_Kashino_2013 | |||
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 | |||
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 | |||
| China_LN_2018 | |||
| China_wbBS01_2018 | |||
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 | |||
| Lithuania_LT14_2014 | |||
| South_Africa_1985 | |||
| South_Africa_2_2008 | |||
| Zambia_LIV_1983 |
Protein Protein |
QGM12715.1 QGM12715.1 |
