Strain
Zambia_LIV_1983
(Region: Zambia; Strain: LIV_5_40; Date: 1983)
Gene
p505_8R
Description
Annotated in NCBI,
505_8R
Location
GenBank Accession
Sequence
CDS
ATGGATCTATCCAAAGGATATACAATGTTGGTGTGCTTATACAGCATGTTCTTACTCTTTCCATCAATGTACCCTTATTCCTTGCAGGAGAAGAGGGAAACAATGTTATGGTACAGCTTTTGTTGCTATGGGAAGGAAATCTTCATTATGCCATCATACGAGCTTTGTACACTGTGCAATATGGCTTATTATGTGTGTACCATACCCAAATTCAGGACTGGCATGTTCTCCTCCCCTTGTTTCAAGATCCAGAAACATTCGAAAAATGTCATGTTTTATGCCTTGTATGTGTTCTTTCATGCCTTCTCCAACATGCTGTACAATATATCATGCTTTCTATTCTTGTTATATATATACAGGATCTATTATATGTACTATTTACGCAACAAATTCAAGGACTATTTATTTTACCATGTGTACATCGGATGTTTGGGATTCTTACGTGGATGGGTCAAAATCTGCCAATTCCTGTTCCTGTGCCTATTTTTACCATTGCTGTTGTCACAAAAGATTTACAAATGTTTTCCTTACGGTACAAGATTGTTTTTGTATACATGGAAAATCAAGGACTGTTTCATTTATCCCAGGTACTTCGTATGGTTATGCTATATCATCACTTTACCATGGTATTATATATACGACTTTTACCCTTTGTGCTGGAAATTTTACAACATGGTGGGAATGTATATACAGCCTTATCTTATGCTGTCACACAAAACAAAAGAAAGATTTTACACCATGTTGTTCGCCAAAAGAATATACCCCATACAACCATTGTACGAATGTTGCATCTGGCTGTACAAAAGCATGCTCCCAGGAAAACTCTGTACTTGTTACTATCTTACATATATTACAAGGTGTACAATGTTACAAAGTTGTTACAACATGTACTGTATTACAACTCTACTCTTGTGTTATGTATCTTGTTACAAAAAAAGAAAAACCTGCTGGATGCTACTTTGTCAAGATATGTCAAAGATTCTACATACTTTCGGGTGTATGTATTTATGCAAGACTTCTCCATCAGCCCAGAAAAATTCATTACAATACCTGTGCGGGAAAAGAGGAATGTGTTGTTCAAGGGTATTTCTGTACATATTTGGGAAAATCCCGCGGAAAGAATCAGGAATCTTATGCAGATACTGTGTACCATACAATATGTCAGTGGAAGACAATTCCTGTTATATATCATTCACACCATTTACCAGAGTTATTCTTTGTCACCTGTACAAATTCTTATATTGGCAACATTCTATGTCAAACACAATGCAACCACCCATTTTATACATCTCTGCAAATATCTTTGGCTGTACAGAGGAACAGAAAGTATGTATCTGTTTTTACAGTGCTTGGAAATTGCTGTTGTGTACGAGTTTCCTGTTATTATATGCATTGTGTGTGTATATATTATCTACTTGTTTACTGCAGGAGCTATTACCAAGGAAGAAATCATGCAAGCCTATGCTTTGGAGTATGCCATGTATTAAATTTCTGAATAAGTAA
Protein
MDLSKGYTMLVCLYSMFLLFPSMYPYSLQEKRETMLWYSFCCYGKEIFIMPSYELCTLCNMAYYVCTIPKFRTGMFSSPCFKIQKHSKNVMFYALYVFFHAFSNMLYNISCFLFLLYIYRIYYMYYLRNKFKDYLFYHVYIGCLGFLRGWVKICQFLFLCLFLPLLLSQKIYKCFPYGTRLFLYTWKIKDCFIYPRYFVWLCYIITLPWYYIYDFYPLCWKFYNMVGMYIQPYLMLSHKTKERFYTMLFAKRIYPIQPLYECCIWLYKSMLPGKLCTCYYLTYITRCTMLQSCYNMYCITTLLLCYVSCYKKRKTCWMLLCQDMSKILHTFGCMYLCKTSPSAQKNSLQYLCGKRGMCCSRVFLYIFGKIPRKESGILCRYCVPYNMSVEDNSCYISFTPFTRVILCHLYKFLYWQHSMSNTMQPPILYISANIFGCTEEQKVCICFYSAWKLLLCTSFLLLYALCVYILSTCLLQELLPRKKSCKPMLWSMPCIKFLNKX
Summary
Uniprot
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Single-Pass Membrane
Topology
Length:
501
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
159.69886
Exp number, first 60 AAs:
29.7921
Total prob of N-in:
0.56059
POSSIBLE N-term signal
sequence
Length:
500
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
159.73118
Exp number, first 60 AAs:
29.79208
Total prob of N-in:
0.56059
POSSIBLE N-term signal
sequence
outside
1 - 5
TMhelix
6 - 28
inside
29 - 96
TMhelix
97 - 119
outside
120 - 133
TMhelix
134 - 151
inside
152 - 196
TMhelix
197 - 219
outside
220 - 287
TMhelix
288 - 310
inside
311 - 452
TMhelix
453 - 475
outside
476 - 501
outside
1 - 5
TMhelix
6 - 28
inside
29 - 96
TMhelix
97 - 119
outside
120 - 133
TMhelix
134 - 151
inside
152 - 196
TMhelix
197 - 219
outside
220 - 287
TMhelix
288 - 310
inside
311 - 452
TMhelix
453 - 475
outside
476 - 500
Population Genetic Test Statistics
Pi
0.0656113
Theta
0.0785056
Tajima's D
-0.717591
CLR
0.013398
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 | |||
| China_ASFV-SY18_2018 | |||
| Poland_Pol16_20186_o7_2016-2017 | |||
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 | |||
| Poland_Pol17_03029_C201_2016-2017 | |||
| Poland_Pol17_04461_C210_2016-2017 | |||
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 | |||
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 | |||
| Portugal_OURT_88.3_1988 | |||
| Spain_E75_1975 | |||
| Russia_Georgia_2007 | |||
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 | |||
| Russia_Kashino_2013 | |||
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 | |||
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 | |||
| China_LN_2018 | |||
| China_wbBS01_2018 | |||
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 | |||
| Lithuania_LT14_2014 | |||
| South_Africa_1985 | |||
| South_Africa_2_2008 | |||
| Zambia_LIV_1983 |
Protein Protein |
QGM12697.1 QGM12697.1 |
