ASFVdb The African Swine Fever Virus Database
Strain
Zambia_LIV_1983 (Region: Zambia;  Strain: LIV_5_40;  Date: 1983)
Gene
p505_7R
Description
Annotated in NCBI,  505_7R
GenBank Accession
 

Sequence

CDS
ATGTTTTTACCAAGCATACCCTACAACGGCTGGGGTTATATTGGAAAGAGCATGGATCCGTCCATCGAATACAAAAGGACAGCATATTGTTACAGAATGTATTGGTTCTTTCTATCAATGTTGCTTTACATCTTGCAGGAGAGGAGGGGGACACAGATGTACTACAGCTCTTGTTATTATGGGAGGGAAATCTGCATTATGCCATCATACGAGCCTTGTACACTGTGTATTATATCCTATTATGTGTGTACCATACCCAAATTCAGGACTGGCATATTCTCCTACCCATGTTTCAAGATCCAGAAACATTCGAAAAATGTCATGTTTTATGCCTTGGATGTGTCTTTATTTGCCTTCTCCAACATGCTGTATATTATATCATGCTTTCTATCCTTGTCAAATATATGGAAGACTTACTATATGTATGGATTACGCATCGTATCCAATCCCTGTTTGTTTTGGCATGTGTATACCGGAGAATTGTGTTTATTCATTGGATACGCCAAAATCTGCCAATTCCTGTACCTGTTGCCATTTTTACCATTGCTGTTGCTACAAGAGATTTACAACTGTTTTCCTTACGGTACAAGATTATTTTTGTTTACATGCAAAGACAGGGAATCATTCAATTATCCAATGGAGTTCGCATGGTTGTGCTATATCGTCACATTACCATGGCAATACATATTGGACTTTTACCCTTTGTTCTGGAAACTTTACAACATGGTGGGAATATACATACAGCCTTATCTTATGCAGTATCACACAATACAAGAAAAATTCTGGATTATCTTATTCGCCAGAAAAATATACCCCCTATTACAATTGTACGACTTTTATATCTGGCCGTGTACAACCAATCTTCCAGGAAAACTTTGTACTTGTTGCTATCTTACATATATTACAAGGTGTACAATGTTACAAAGCTGGTACAGCATGTACTATATGTGTATTCCACTCTTGTGTTACAAATTTTATTGGAAAAAAAGGAAAATCTACTGGATGCTGTTTTATCAAGACTTGTTCAACATTCTACATATTTCCGGGTGTGTGTATTTATCCAGGAGTTTTCCATCAGCCCAGAAAAATTCATTACAATACCTGTGCGGGAAAAGAAAAATGTGTTATTCGAGGCTATTTCTGTACATATTTGGGAAAATCCCACAGAAAGAATTACTTATCTCAAACAGATACTGCATACCATACAATATGTACGTGGAAGACGGTTTTTGTTACACATCATTCACAGCATTTACCAAAGTTATTCACTACAACATGTACATATTCTTATATTGGCAACATTCTATGTCAAACACAATGCAACCACCCATTTTATACATCTCTGCAAATATCTTTGGCTGTACAGAGGAACAGAAAGTATGTATCTGTTTTTACAGTACTTGGAAATTGCTGTTGTGTACGAGTTTCCTGTTATTATATGCATTGTGTGTGTATATATTATCTACTTGTTTACTGCAGGAGCTATTACCAAGGAAGAAATCATGCAAGCCTATGTTGCTTTACAGTACCCATGTATTAACATTCTGA
Protein
MFLPSIPYNGWGYIGKSMDPSIEYKRTAYCYRMYWFFLSMLLYILQERRGTQMYYSSCYYGREICIMPSYEPCTLCIISYYVCTIPKFRTGIFSYPCFKIQKHSKNVMFYALDVSLFAFSNMLYIISCFLSLSNIWKTYYMYGLRIVSNPCLFWHVYTGELCLFIGYAKICQFLYLLPFLPLLLLQEIYNCFPYGTRLFLFTCKDRESFNYPMEFAWLCYIVTLPWQYILDFYPLFWKLYNMVGIYIQPYLMQYHTIQEKFWIILFARKIYPLLQLYDFYIWPCTTNLPGKLCTCCYLTYITRCTMLQSWYSMYYMCIPLLCYKFYWKKRKIYWMLFYQDLFNILHISGCVYLSRSFPSAQKNSLQYLCGKRKMCYSRLFLYIFGKIPQKELLISNRYCIPYNMYVEDGFCYTSFTAFTKVIHYNMYIFLYWQHSMSNTMQPPILYISANIFGCTEEQKVCICFYSTWKLLLCTSFLLLYALCVYILSTCLLQELLPRKKSCKPMLLYSTHVLTFX

Summary

Uniprot
ProteinModelPortal
PDB
5NP1     E-value=3.10839,     Score=71

Ontologies

Subcellular Location

From MSLVP
Multi-Pass Membrane

Topology

Length:
516
Number of predicted TMHs:
7
Exp number of AAs in TMHs:
189.73996
Exp number, first 60 AAs:
17.88559
Total prob of N-in:
0.12689
POSSIBLE N-term signal
sequence
Length:
515
Number of predicted TMHs:
7
Exp number of AAs in TMHs:
189.76538
Exp number, first 60 AAs:
17.88559
Total prob of N-in:
0.12689
POSSIBLE N-term signal
sequence
outside
1  -  27
TMhelix
28  -  45
inside
46  -  113
TMhelix
114  -  136
outside
137  -  162
TMhelix
163  -  185
inside
186  -  214
TMhelix
215  -  237
outside
238  -  309
TMhelix
310  -  327
inside
328  -  409
TMhelix
410  -  432
outside
433  -  469
TMhelix
470  -  492
inside
493  -  516
outside
1  -  27
TMhelix
28  -  45
inside
46  -  113
TMhelix
114  -  136
outside
137  -  162
TMhelix
163  -  185
inside
186  -  214
TMhelix
215  -  237
outside
238  -  309
TMhelix
310  -  327
inside
328  -  409
TMhelix
410  -  432
outside
433  -  469
TMhelix
470  -  492
inside
493  -  515
 
 

Population Genetic Test Statistics

Pi
0.1518354
Theta
0.1399998
Tajima's D
0.3224504
CLR
0
Interpretation
Possibly Balancing Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014    
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983 Protein
Protein
QGM12696.1
QGM12696.1
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