Strain
Zambia_LIV_1983
(Region: Zambia; Strain: LIV_5_40; Date: 1983)
Gene
p360_13L
Description
Annotated in NCBI,
360_13L
Location
GenBank Accession
Sequence
CDS
ATGTTGGATATGTTTTTTGTTTTATATTCTTTTATTATACTGCTTATTTCTTCGGGGTCCTTTATGTTTATTGGCAAGGAAGCATCTGTACTGTATATATCCAAAGTCAAGCTATGGCTTACAAAATTATATCCTTTTTGTTCCGCTATGGCACGACCCTCTTCAAAGGCATTACCACCCAAATCTATACAGAAAAATATATTACCGACGTTATATTATTGTACTGTACTGTGCATACCTTGGTTGTTGTTGCCCCCCAGGGCGTATCAGTATTATATTGTTATTGGATTGTTATCCTTGGCACAAGCCAGACATATCATTTCATGGACGTCTATTTGGACTTTTTCCTTGTGGTACATCTCATGTACCTCATATATTTTGTTATATTACAGGAGACATTTTATTCGCCATTCGTTATGTTCCGTATATTTCTCATCTACAAAACAAATGGCGTTCTTACAATCGTATTGTACTGCTTTGGCGTACCAATACTTCACTACTACATCATTTATCTCGTCCGTTTCTTTTATTTCTATGTGCCCCCATACTCTTTTATACATTATGCCTCTTATTTGTATATCAAATTTGTTTTCTATATTACGATTATTCATACAAATTTCATGGCACAAAATATTACTGCCGCTGGTTTTATTGTGCATTATCCTGGTGCAAATACGGAAAATATCGTTGTTCTCTACAGTTTCTTTGGCGCCTATCTGCCTACACAACTCTCGGATGTGCTTCGTATTGTTACAAAGCAAACCATACTTGTTATTTGCGCCCCACTCTGTATACAGCTTTATCAGACTATACTTGTTTTCCTTATCAGCTATTATTATTGCCACACGAAGGTCTATATCTTCTCCTACAAATCCTGTTTTTATTTGTATTCGGCCACGATCCATACAAAGCTTGTGTGGAGCATCATGCCACCATACGCCACAGTATTTCAAAATGCAGTGTTCATCTATTGTCAAACACTGGCTGGCTACCGTCTTTTTGTCGAGGGTCTGCAGAGAGAGCGGCAACGACATGTTTCTTTTTCACCAAAAAAAAATCAAATGTTCTCGTCTTTAA
Protein
MLDMFFVLYSFIILLISSGSFMFIGKEASVLYISKVKLWLTKLYPFCSAMARPSSKALPPKSIQKNILPTLYYCTVLCIPWLLLPPRAYQYYIVIGLLSLAQARHIISWTSIWTFSLWYISCTSYILLYYRRHFIRHSLCSVYFSSTKQMAFLQSYCTALAYQYFTTTSFISSVSFISMCPHTLLYIMPLICISNLFSILRLFIQISWHKILLPLVLLCIILVQIRKISLFSTVSLAPICLHNSRMCFVLLQSKPYLLFAPHSVYSFIRLYLFSLSAIIIATRRSISSPTNPVFICIRPRSIQSLCGASCHHTPQYFKMQCSSIVKHWLATVFLSRVCRESGNDMFLFHQKKIKCSRLX
Summary
Uniprot
ProteinModelPortal
PDB
6QD4
E-value=0.663056,
Score=76
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
359
Number of predicted TMHs:
8
Exp number of AAs in TMHs:
150.48108
Exp number, first 60 AAs:
21.4893
Total prob of N-in:
0.36253
POSSIBLE N-term signal
sequence
Length:
358
Number of predicted TMHs:
8
Exp number of AAs in TMHs:
150.51568
Exp number, first 60 AAs:
21.48934
Total prob of N-in:
0.36250
POSSIBLE N-term signal
sequence
inside
1 - 4
TMhelix
5 - 24
outside
25 - 66
TMhelix
67 - 84
inside
85 - 90
TMhelix
91 - 108
outside
109 - 111
TMhelix
112 - 129
inside
130 - 149
TMhelix
150 - 172
outside
173 - 181
TMhelix
182 - 204
inside
205 - 210
TMhelix
211 - 228
outside
229 - 257
TMhelix
258 - 280
inside
281 - 359
inside
1 - 4
TMhelix
5 - 24
outside
25 - 66
TMhelix
67 - 84
inside
85 - 90
TMhelix
91 - 108
outside
109 - 111
TMhelix
112 - 129
inside
130 - 149
TMhelix
150 - 172
outside
173 - 181
TMhelix
182 - 204
inside
205 - 210
TMhelix
211 - 228
outside
229 - 257
TMhelix
258 - 280
inside
281 - 358
Population Genetic Test Statistics
Pi
0.0862154
Theta
0.1364882
Tajima's D
-1.210771
CLR
0.294653
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 | |||
| China_ASFV-SY18_2018 | |||
| Poland_Pol16_20186_o7_2016-2017 | |||
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 | |||
| Poland_Pol17_03029_C201_2016-2017 | |||
| Poland_Pol17_04461_C210_2016-2017 | |||
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 | |||
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 | |||
| Portugal_OURT_88.3_1988 | |||
| Spain_E75_1975 | |||
| Russia_Georgia_2007 | |||
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 | |||
| Russia_Kashino_2013 | |||
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 | |||
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 | |||
| China_LN_2018 | |||
| China_wbBS01_2018 | |||
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 | |||
| Lithuania_LT14_2014 | |||
| South_Africa_1985 |
Protein |
QGM12690.1 |
|
| South_Africa_2_2008 |
Protein |
QGM12812.1 |
|
| Zambia_LIV_1983 |
Protein Protein |
QGM12690.1 QGM12690.1 |
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zhuzl@cqu.edu.cn,
mg@cau.edu.cn
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