Strain
Zambia_LIV_1983
(Region: Zambia; Strain: LIV_5_40; Date: 1983)
Gene
p360_2L
Description
Annotated in NCBI,
360_2L
Location
GenBank Accession
Sequence
CDS
ATGTTTCTTTTGTATTGCTATTTCTATGCTCTCTTCGAAAGCATTACCTCCTATATCTATACAAAAGAACAAGTTATTATTATATATGTTTTTTACCGAGGTATCCATTGCCCGATTGTTGTCAGCCCCCAATACAAAACAATACTATATGGTTATATATTTGCTATCTTTCATACAGGCCAGATACATCATTTCATCAATATGCATATCAACCTTTTTTATATCATATATTTCATGTTGTTCAGACACGTTATTATATGCAAGCCAACATATTACCAGCCAATCTTTATATATATTGGATGGCTTCAATGTGGTTATATATTATCGCCAACCCATACCAGTATCTACCTATTATTTCGTTCATTGTTATTTCATTCAATATATAGTTGTTCGATATTTTTTCTATATATCAGGAAATTATATTTTTCAATCCCTCTATATTCTGGAAAAGGGGCTTATTACATATCAATTCATGGCATATATTATTATTACTACTACTTTTATTACGATGTATTTTACAAAATATTTGTACAATATCCGTTTCATCCAAAATTTTTGCACCTATCTCCCGGCAGAAATTCCAAGTATGCTCCGTATTGTCAGTGTTTATGCTACAGTTTATGTCTGCACCCCATTCGGTATACAACTCTATTACATCATACTTGTTTTCCTGCACAGCTTTCATTATTGCGAGATTTATATCTATACCATCTTTATATATTGCTGTTTTTATCATCAATTGTTTATTCTCATTACTACAAAGCATGTTTGGAGCTCCATGCCACCACAAACCACAATATTTCAAAATATACTACTGTTCTTTACATATGTGCTGTGTGGCCAGCACTTTTTTATCAAGAGCCTGCAGAGACGATGGAGTACACATATTTTTTTTTTGCAAAATGGTTTAAGTTTTAA
Protein
MFLLYCYFYALFESITSYIYTKEQVIIIYVFYRGIHCPIVVSPQYKTILYGYIFAIFHTGQIHHFINMHINLFYIIYFMLFRHVIICKPTYYQPIFIYIGWLQCGYILSPTHTSIYLLFRSLLFHSIYSCSIFFLYIRKLYFSIPLYSGKGAYYISIHGIYYYYYYFYYDVFYKIFVQYPFHPKFLHLSPGRNSKYAPYCQCLCYSLCLHPIRYTTLLHHTCFPAQLSLLRDLYLYHLYILLFLSSIVYSHYYKACLELHATTNHNISKYTTVLYICAVWPALFYQEPAETMEYTYFFFAKWFKFX
Summary
Uniprot
EMBL
Proteomes
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
306
Number of predicted TMHs:
8
Exp number of AAs in TMHs:
143.1195
Exp number, first 60 AAs:
25.90541
Total prob of N-in:
0.50002
POSSIBLE N-term signal
sequence
Length:
305
Number of predicted TMHs:
8
Exp number of AAs in TMHs:
143.35835
Exp number, first 60 AAs:
25.93255
Total prob of N-in:
0.50045
POSSIBLE N-term signal
sequence
inside
1 - 1
TMhelix
2 - 20
outside
21 - 34
TMhelix
35 - 57
inside
58 - 63
TMhelix
64 - 86
outside
87 - 90
TMhelix
91 - 108
inside
109 - 114
TMhelix
115 - 137
outside
138 - 151
TMhelix
152 - 169
inside
170 - 232
TMhelix
233 - 252
outside
253 - 266
TMhelix
267 - 284
inside
285 - 306
inside
1 - 1
TMhelix
2 - 20
outside
21 - 34
TMhelix
35 - 57
inside
58 - 63
TMhelix
64 - 86
outside
87 - 90
TMhelix
91 - 108
inside
109 - 114
TMhelix
115 - 137
outside
138 - 151
TMhelix
152 - 169
inside
170 - 232
TMhelix
233 - 252
outside
253 - 266
TMhelix
267 - 285
inside
286 - 305
Population Genetic Test Statistics
Pi
0.1168149
Theta
0.2158146
Tajima's D
-1.6191147
CLR
10.261935
Interpretation
Possibly Positive selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 | |||
| China_ASFV-SY18_2018 | |||
| Poland_Pol16_20186_o7_2016-2017 | |||
| Poland_Pol16_20538_o9_2016-2017 | |||
| Poland_Pol16_20540_o10_2016-2017 | |||
| Poland_Pol16_29413_o23_2016-2017 | |||
| Poland_Pol17_03029_C201_2016-2017 | |||
| Poland_Pol17_04461_C210_2016-2017 | |||
| Poland_Pol17_05838_C220_2016-2017 | |||
| Poland_ASFV_POL_Podlaskie_2015 | |||
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 | |||
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 | |||
| Portugal_OURT_88.3_1988 | |||
| Spain_E75_1975 | |||
| Russia_Georgia_2007 | |||
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 | |||
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 | |||
| Russia_Kashino_2013 | |||
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 | |||
| Namibia_Warthog_1980 | |||
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 | |||
| China_LN_2018 | |||
| China_wbBS01_2018 | |||
| Ukraine_Kyiv_2014 | |||
| Belgium_Etalle_wb_2018 | |||
| Lithuania_LT14_2014 | |||
| South_Africa_1985 | |||
| South_Africa_2_2008 | |||
| Zambia_LIV_1983 |
Protein Protein |
QGM12665.1 QGM12665.1 |
