Strain

Ukraine_Kyiv_2014 (Region: Ukraine;  Strain: ASFV/Kyiv/2016/131;  Date: 2014)

Gene

C147L

Description

Annotated in NCBI,  ASFV_Kyiv_2016_131_00105

Location

MN194591.1(-):90002-90316

GenBank Accession

QED21641.1

Full name

DNA-directed RNA polymerase subunit 6 homolog       + More

CDS

ATGGCTGATAATGACAACGAGGATCTTATCATGGATGACCTCGTGGAGGAATATGTGGAAACGGAAGAGGAGAACCTCGTCGACAGTGAGGAGGAGTCCGAGGACAAGGACGAGATCGTGGAGTCTCCGTCCATCTGCGAGGGCTTTGTGCAGGCCTCGTCGCAAACATTGGTCATTATACCCGATAACGAGCGCATTACCTCCAACGTTTTAACCACCTTTGAGGCCACAAGGTTGGTCGCCGTTAGAGCGCAACAATTGGCAATTAATGGATCTACAATGCTTAAAAAAAATATAGCAGTCCTATTGATATAG

Protein

MADNDNEDLIMDDLVEEYVETEEENLVDSEEESEDKDEIVESPSICEGFVQASSQTLVIIPDNERITSNVLTTFEATRLVAVRAQQLAINGSTMLKKNIAVLLI

Catalytic Activity

a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)
a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)

Subunit

Component of the RNA polymerase that consists of at least 6 subunits.
Component of the RNA polymerase that consists of at least 6 subunits.

Similarity

Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family.

Keywords

Complete proteome   DNA-directed RNA polymerase   Host cytoplasm   Reference proteome   Transcription   Nucleotidyltransferase   Transferase  

Feature

chain  DNA-directed RNA polymerase subunit 6 homolog

Uniprot

A0A5B8XA58   E0WMK7   A0A2X0RTW5   D4I5Q7   A9JL21   A0A0A1E334   + More
P42484   P0C9D8   P0C9D7   A0A0A1E0Q7   A0A0C5BC81   P0C9D9   Q08399   A9JLU9   P0C9D6  

Pubmed

21470447    18198370    25406173    26618713    11831707    25645905    + More
8332503   

EMBL

MN194591    QED21641.1    FR682468    CBW46735.1    MG939583    MG939587    + More
MG939588    LS478113    AXZ95844.1    AXZ96032.1    AXZ96127.1    SPS73492.1    FN557520    CBH29170.1    AM712239    CAN10169.1    KM262844    KM102979    KP055815    KX354450    AIY22261.1    AJZ77155.1    AKO62751.1    AOO54403.1    U18466    AY261366    AY261363    KM262845    AIY22419.1    KM111294    KM111295    MH025916    MH025917    MH025918    MH025919    MH025920    AJL34083.1    AJL34248.1    AXB49298.1    AXB49472.1    AXB49644.1    AXB49815.1    AXB49988.1    AY261360    L15411    AM712240    CAN10417.1    AY261361   

Proteomes

UP000321214    UP000141072    UP000101090    UP000130745    UP000117635    UP000142390    + More
UP000241813    UP000266411    UP000000624    UP000000858    UP000000859    UP000110401    UP000101566    UP000105860    UP000000861    UP000108903    UP000000860   

Pfam

PF01192   RNA_pol_Rpb6

Interpro

IPR006110   Pol_omega/K/RPB6
IPR006111   RpoK/Rpb6
IPR020708   DNA-dir_RNA_polK_14-18kDa_CS
IPR012293   RNAP_RPB6_omega
IPR036161   RPB6/omega-like_sf

SUPFAM

SSF63562   SSF63562

Gene 3D

3.90.940.10     3.90.940.10    

ProteinModelPortal

A0A5B8XA58   E0WMK7   A0A2X0RTW5   D4I5Q7   A9JL21   A0A0A1E334   + More
P42484   P0C9D8   P0C9D7   A0A0A1E0Q7   A0A0C5BC81   P0C9D9   Q08399   A9JLU9   P0C9D6  

KEGG

vg:22220299    

GO

GO:0003677  F:DNA binding
GO:0003899  F:DNA-directed 5'-3' RNA polymerase activity
GO:0006351  P:transcription, DNA-templated
GO:0030430  C:host cell cytoplasm

From MSLVP

Single-Pass Membrane

From Uniprot

Host cytoplasm  
Host cytoplasm  

Length:

104

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00243

Exp number, first 60 AAs:

0

Total prob of N-in:

0.25648

Length:

104

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00243

Exp number, first 60 AAs:

0

Total prob of N-in:

0.25648

outside

1  -  104

outside

1  -  104

 

 

Pi

0.0257476

Theta

0.0318738

Tajima's D

-0.5448881

CLR

0

Interpretation

No evidence of Selection