ASFVdb The African Swine Fever Virus Database
Strain
Ukraine_Kyiv_2014 (Region: Ukraine;  Strain: ASFV/Kyiv/2016/131;  Date: 2014)
Gene
Helicase
Description
With frameshift mutation but translatable,  Member of helicase superfamily II group including hsdR subunits of type Ib restriction enzymes
GenBank Accession
Full name
Probable helicase A859L      
 

Sequence

CDS
ATGGGCTATCAGGAGCTGCGGCGAAGTGGGAGGGCCATTCTGCAGATGGCCTGCCGATGCGGCAAAACTCGCGTCGCCTATCTTATCCTCTCCAATTATCTTCAAGGAAAAGTTTTGTACCTGGTGCCGGGCCTGTCCCTACTACGGCAGACTCTGGAAAAACTCTATCAGTATGGAATTTCTTTGAAGAACGTTTTGCTTGTGGGGTCTGACCAGACCCGCATTGTGCTAAATCACGACAATATAGAAATGACCACCAATCCTGTCTTTATTGCAAAACGGATACGGGAGGCCCCTTCTCTTCTTGTGATTGCCACCTACCAATCCTCCACGCTACTGGTGGATGATTTCGATCTTATTATTAGCGATGAATGTCACCGGATTTGCGGCGAATGGGAGACACGGCCCTTTACCCACGTGTTGCTCAACTTTAAAAAAGGGCACCGACTTTTTTTAACGGCAACGCCCAGGTACGACACCCCGCTTTCCATGAAAAATCGTGAACTTTTTGGCGGCGTTGCCTTTCGCTACTATCTGCGAGAAGGCATAGAGGCCGGCTATGTAAATGATTTTGAATTGCAGATGGTAGCCGCGCCTAAATTGGCCCACCAACCGAGTACCAAAGAGGAGACCACGAAACAGATCATAGTAAAGCAAATTATAATGGCCTTAGCCTATTTAAAAACCAATATACCGGCTCCTAAAATGCTGGTATTTACCCGTGATATTAAACAGGCCAAGGAGCTATACGCGGCGTTGGTAGACCAAGGGGTCTATGCCCTGATAGCTCACTCAACCCTGCCGCGACAGGTTATCCTCAAAACATTTACAGAATTTTGTTCCTCAAAGGAACCCGTTATTTTATTAAACTGTCGACTCTTTCAAGAGGGCGTAGAGGTTCCAGAACTAAACGCGGTATTTTTTGCAGCGCCGCGACATAGTCCTAGAGACATTATTCAAAGCATATGCAGACCGCTGAACAAGCAGGTTCAAAAGCCTCACGCAACCATTTTTCTACCTTTAGAAGTAAACACAGAAAACGTATGTCTAGACAGGTTTTCTAGCATTATCCCCTTTGCAGACGCCTTGGCATCTGAAGATCCACGCTTTTACGAGCATCTTTTAAACCCTTCGGAGGTTGCCTATCCGATAAACTGGATCGGGGCCCACGGATCGGTGTCAGAATTGTTGCAATTGGCACGACATGCCATACGCTATGGCACGCAGGGCAAAATAGACCGTCTTACCCGCAGCGAAAGACTTCCTTGGAAGGCCGCTTTTGCAGAACTCAAACGTACGGTTGAAATATGTTGCAGATATCCTAAAATCAACGACGGCTTTCACTTTGGAGGCGCCACGCTGCGGTTCGACACATGGTATAAATGGGTCATTAAATCTTATTTGCAGTACAAAAACAAGGAACCGTCTTCTTTAGAGCCTTACCAGGTGTCGGACCTGGAGTCCTTGCAAGATTGGACAACCCGTGGTGTTGGCGGGCCTTATCCCTGGGAAGAAAGCATGGCATTCTTGGAAACTTGGCTTGCCCAAAATAAAGGAGAGCTTGTTGCCATTGATATTCATCAGGGTGGATGGATAGGATTAGATGCGACGCCCATGGAAAGACTATCAGGCGTCCTAACCACTGTTTCGCAACGCGATGGCCGAAGCTATGGAAAAAATAAAAAGCTTCGACCTAAAAAGGGATTTATGATTCCACCCCAGCAGGCGCAAGATCTTGATCGCATTTTTGGAAAGCACAATCTTAAGTGGAGAAAGGACAGGGTTAATGGCTTTTTAAAGGAAGATGAACATGGAAATTATACCGGTGAGCCTACCTGTATTCAAGAAGCCTATCGGACCTTTAAAGAATACGTAAAAACAAACCCTGAATATATCGAAAAATACTGGCCTGGTTATGCCAAAGGCAAGCATAAACACCAAGAATTACCGCACATATGGGAAAAGGGCCTGGCTCCTCCCCGCTATAAGGCATTTAAAGATGGTAATAAACAGCTTATCCAAAGAAGTCCGAAAAAAAGGACATTAAAAATTAAA
Protein
MGYQELRRSGRAILQMACRCGKTRVAYLILSNYLQGKVLYLVPGLSLLRQTLEKLYQYGISLKNVLLVGSDQTRIVLNHDNIEMTTNPVFIAKRIREAPSLLVIATYQSSTLLVDDFDLIISDECHRICGEWETRPFTHVLLNFKKGHRLFLTATPRYDTPLSMKNRELFGGVAFRYYLREGIEAGYVNDFELQMVAAPKLAHQPSTKEETTKQIIVKQIIMALAYLKTNIPAPKMLVFTRDIKQAKELYAALVDQGVYALIAHSTLPRQVILKTFTEFCSSKEPVILLNCRLFQEGVEVPELNAVFFAAPRHSPRDIIQSICRPLNKQVQKPHATIFLPLEVNTENVCLDRFSSIIPFADALASEDPRFYEHLLNPSEVAYPINWIGAHGSVSELLQLARHAIRYGTQGKIDRLTRSERLPWKAAFAELKRTVEICCRYPKINDGFHFGGATLRFDTWYKWVIKSYLQYKNKEPSSLEPYQVSDLESLQDWTTRGVGGPYPWEESMAFLETWLAQNKGELVAIDIHQGGWIGLDATPMERLSGVLTTVSQRDGRSYGKNKKLRPKKGFMIPPQQAQDLDRIFGKHNLKWRKDRVNGFLKEDEHGNYTGEPTCIQEAYRTFKEYVKTNPEYIEKYWPGYAKGKHKHQELPHIWEKGLAPPRYKAFKDGNKQLIQRSPKKRTLKIK

Summary

Similarity
Belongs to the asfivirus helicase A859L family.
Keywords
ATP-binding   Complete proteome   Helicase   Hydrolase   Nucleotide-binding   Reference proteome  
Feature
chain  Probable helicase A859L
EMBL
AM712239    CAN10139.1    FN557520    CBH29141.1    AM712240    CAN10388.1    + More
KM262844    KM262845    KM102979    KP055815    KX354450    AIY22231.1    AIY22390.1    AJZ77050.1    AKO62722.1    AOO54370.1    U18466    FR682468    CBW46706.1    MG939583    MG939587    MG939588    AXZ95816.1    AXZ96004.1    AXZ96099.1    LS478113    SPS73463.1    AY261366    AY261363    KM111294    AJL34054.1    AY261360    KM111295    AJL34219.1    MH025916    MH025917    MH025918    MH025919    MH025920    AXB49269.1    AXB49443.1    AXB49615.1    AXB49786.1    AXB49959.1    AY261361    PRFA01000058    PWU89540.1    PRFC01000144    PWV04781.1    AYLP01000041    ESS66650.1    AAHK01001120    EAN86926.1    PRFC01000359    PWU90645.1    FR796463    UINB01000031    CAM70323.1    SUZ44206.1    AHKC01011967    EKF30546.1    FR796427    CAJ08152.1    FR799618    CBZ36408.1    LS997630    SYZ68202.1    FR799006    CAM42427.1    CP009400    AIO00599.1    CALQ01001382    CCM17777.1    AUPL01000464    ESL11778.1    LGTL01000032    KPA74015.1    FR799583    CBZ29061.1    HF955125    CCW65814.1    LJSK01000007    KPI90361.1    CYKH01002159    CUG93533.1    NBCO01000003    ORC92770.1    CZPT02000209    SCU65038.1    FN554973    CBH16385.1    CM000208    EAN78608.1    QSBY01000010    RHW69379.1    ATMH01009351    ATMH01006855    ATMH01006372    ATMH01002372    ATMH01000607    EPY19648.1    EPY25075.1    EPY25998.1    EPY33256.1    EPY36395.1    HE575323    CCC94274.1    HE573026    CCC52156.1    ATMG01010879    EPY27205.1   
Pfam
PF10544   T5orf172
PF00271   Helicase_C
PF04851   ResIII
Interpro
IPR014001   Helicase_ATP-bd
IPR006935   Helicase/UvrB_N
IPR001650   Helicase_C
IPR018306   Phage_T5_Orf172_DNA-bd
IPR027417   P-loop_NTPase
SUPFAM
SSF52540   SSF52540
PDB
5FFJ     E-value=1.81009e-16,     Score=213

Ontologies

KEGG

Subcellular Location

From MSLVP
Nucleus

Topology

Length:
685
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
7.98129999999998
Exp number, first 60 AAs:
7.96308
Total prob of N-in:
0.35908
outside
1  -  685
 
 

Population Genetic Test Statistics

Pi
0.0311473
Theta
0.0352725
Tajima's D
-0.6513651
CLR
0
Interpretation
No evidence of Selection

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
Spain_BA71_1971    
China_AnhuiXCGQ_2018    
China_ASFV-SY18_2018    
Poland_Pol16_20186_o7_2016-2017    
Poland_Pol16_20538_o9_2016-2017    
Poland_Pol16_20540_o10_2016-2017    
Poland_Pol16_29413_o23_2016-2017    
Poland_Pol17_03029_C201_2016-2017    
Poland_Pol17_04461_C210_2016-2017    
Poland_Pol17_05838_C220_2016-2017    
Poland_ASFV_POL_Podlaskie_2015    
Uganda_R8_2015    
Uganda_R7_2015    
Uganda_R25_2015    
Uganda_N10_2015    
Uganda_R35_2015    
Estonia_2014    
Italy_26544_OG10_2010    
Italy_47_Ss_2008_2008    
Portugal_OURT_88.3_1988    
Spain_E75_1975    
Russia_Georgia_2007    
Kenya_Tk1_2005    
Kenya_Bus_2006    
Russia_Odintsovo_2014    
Portugal_L60_1960    
Portugal_NHV_1968    
Russia_Kashino_2013    
Benin_1997    
South_Africa_KNP_Pretorisuskop_1996    
South_Africa_MGR_Mkuzi_1979    
Malawi_Lil_1983    
Kenya_1950    
Namibia_Warthog_1980    
South_Africa_Warmbaths_1987    
Malawi_Tengani_1962    
China_HLJ_2018    
China_LN_2018    
China_wbBS01_2018    
Ukraine_Kyiv_2014 Protein
CAN10139.1
Belgium_Etalle_wb_2018    
Lithuania_LT14_2014    
South_Africa_1985    
South_Africa_2_2008    
Zambia_LIV_1983    
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