Strain

China_HLJ_2018 (Region: China, Heilongjiang; Strain: Pig/HLJ/2018; Date: 2018)

Gene

I329L

Description

Annotated in NCBI, I329L

Location

MK333180.1(-):172566-173555

GenBank Accession

QBH90628.1

Full name

Transmembrane protein I329L

CDS

ATGCTAAGGGTTTTCATATTTTTTGTTTTTTTAGGAAGTGGCTTAACAGGTAGGATTAAACCACAGGTCACCTGCAAATACTTTATATCAGAAAATAATACATGGTATAAGTACAATGTGACTATTCTCAATAGTAGTATAGTTCTTCCTGCATATAATACTATACCAAGCAATGCTGCTGGCATTTCATGCACTTGTCATGACATAGATTATTTACAAAAAAATAACATAAGTATTCACTACAATACAAGTATTTTAAAGACGTTTCAGGACATCCGTATTATCCGCTGCGGGATGAAAAATATTTCTGAAATTGCAGGTGGCTTTGGTAAAGAACTCAAGTTTTTGGACCTAAGGTATAACGATTTACAAGTCATAGATTATAACATACTCAGAAAACTTATTCGCTCCAACACCCCAACCTACCTATATTACAATAATCTAATGTGTGGAAAAAGAAATTGTCCCTTATACTACTTCCTACTAAAACAGGAACAGACGTACCTAAAGCGTCTTCCGCAGTTTTTCTTAAGAAGAATTAATTTTAGTAACAATAACACATTTTTGTATCATTTTTTAAGCTGCGGGAATAAGCCAGGACATGAGTTTCTGGAATACCAAACAAAATATTGTAGAACAAAGTTTCCCGAGATAAATATTACGGTAAATCAATTGATAGCTAAGAAAAATACGGAACGTTATAAAAGCTGCTACCCCTTAGTGTTCATATCTATTTTATGCTCCTGTATATCATTTCTGTTTTTATTCATATGCTTGTTGCGTTCTATTTGTAAAAAATATTCCTGTACGAAACAGGATAAGTCGAGCCATAACTATATTCCACTCATTCCATCCTACACTTTTAGTTTAAAAAAACATCGTCATCCTGAGACAGCAGTTGTAGAAGATCATACAACCTCAGCAAACAGTCCTATTGTTTATATACCAACAACAGAAGAAAAAAAGGTTTCATGTTCAAGAAGAAAGTAA

Protein

MLRVFIFFVFLGSGLTGRIKPQVTCKYFISENNTWYKYNVTILNSSIVLPAYNTIPSNAAGISCTCHDIDYLQKNNISIHYNTSILKTFQDIRIIRCGMKNISEIAGGFGKELKFLDLRYNDLQVIDYNILRKLIRSNTPTYLYYNNLMCGKRNCPLYYFLLKQEQTYLKRLPQFFLRRINFSNNNTFLYHFLSCGNKPGHEFLEYQTKYCRTKFPEINITVNQLIAKKNTERYKSCYPLVFISILCSCISFLFLFICLLRSICKKYSCTKQDKSSHNYIPLIPSYTFSLKKHRHPETAVVEDHTTSANSPIVYIPTTEEKKVSCSRRK

Similarity

Belongs to the asfivirus I329L family.

Keywords

Complete proteome Glycoprotein Late protein Membrane Reference proteome Signal Transmembrane Transmembrane helix Host membrane

Feature

chain Transmembrane protein I329L

Uniprot

E0WM90 A0A2X0SE61 D4I5G4 A9JM73 A0A0A1E0Y1 P27945 + More
A9JLD8 P0CAE6 P0CAE5 Q65253 P0CAE4 A0A0C5AZ21 A0A0C5B2S4 P0CAE3

Pubmed

21470447 18198370 25406173 26618713 1309282 11831707 + More
8409937 25645905

EMBL

FR682468 CBW46806.1 MG939583 MG939588 LS478113 AXZ95768.1 + More
AXZ96060.1 SPS73563.1 FN557520 CBH29240.1 AM712240 CAN10489.1 KM262844 KM262845 KM102979 KP055815 KX354450 AIY22331.1 AIY22489.1 AJZ77095.1 AKO62821.1 AOO54511.1 M77121 U18466 AM712239 CAN10239.1 AY261366 AY261363 X71982 CAA50849.1 AY261361 KM111294 AJL34152.1 KM111295 MH025916 MH025917 MH025918 MH025919 MH025920 AJL34316.1 AXB49368.1 AXB49542.1 AXB49714.1 AXB49885.1 AXB50058.1 AY261360

Proteomes

UP000141072 UP000101090 UP000108903 UP000110401 UP000117635 UP000142390 + More
UP000241813 UP000266411 UP000000624 UP000130745 UP000000858 UP000000859 UP000000860 UP000105860 UP000101566 UP000000861

Interpro

IPR032675 LRR_dom_sf

Gene 3D

3.80.10.10

ProteinModelPortal

E0WM90 A0A2X0SE61 D4I5G4 A9JM73 A0A0A1E0Y1 P27945 + More
A9JLD8 P0CAE6 P0CAE5 Q65253 P0CAE4 A0A0C5AZ21 A0A0C5B2S4 P0CAE3

PDB

4Z0C E-value=1.7331, Score=72

Ontologies

KEGG

vg:22220369

GO

GO:0016021  C:integral component of membrane
GO:0033644  C:host cell membrane
GO:0004386  F:helicase activity

Subcellular Location

From MSLVP

Single-Pass Membrane

From Uniprot

Membrane
Host membrane

Topology

Length:

329

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.88876

Exp number, first 60 AAs:

0.15932

Total prob of N-in:

0.01469

outside

1 - 237

TMhelix

238 - 260

inside

261 - 329

Population Genetic Test Statistics

Pi

0.0393638

Theta

0.0499491

Tajima's D

-0.7065522

CLR

0

Interpretation

No evidence of Selection

Multiple alignment of Orthologues

Gene Tree

Orthologous in Strains

Strain	Status	Gene
Spain_BA71_1971	Protein	AKO62821.1
China_AnhuiXCGQ_2018	Protein	AYW34111.1
China_ASFV-SY18_2018	Protein	AKO62821.1
Poland_Pol16_20186_o7_2016-2017	Protein	AXZ95768.1
Poland_Pol16_20538_o9_2016-2017	Protein	CAN10239.1
Poland_Pol16_20540_o10_2016-2017	Protein	CAN10239.1
Poland_Pol16_29413_o23_2016-2017	Protein	CAN10239.1
Poland_Pol17_03029_C201_2016-2017	Protein	CAN10239.1
Poland_Pol17_04461_C210_2016-2017	Protein	AXZ96060.1
Poland_Pol17_05838_C220_2016-2017	Protein	CAN10239.1
Poland_ASFV_POL_Podlaskie_2015	Protein	CAN10239.1
Uganda_R8_2015	Protein	AXB49368.1
Uganda_R7_2015	Protein	AXB49542.1
Uganda_R25_2015	Protein	AXB49714.1
Uganda_N10_2015	Protein	AXB49885.1
Uganda_R35_2015	Protein	AXB50058.1
Estonia_2014	Protein	SPS73563.1
Italy_26544_OG10_2010	Protein	AJZ77095.1
Italy_47_Ss_2008_2008	Protein	AOO54511.1
Portugal_OURT_88.3_1988	Protein	CAN10489.1
Spain_E75_1975	Protein	CBH29240.1
Russia_Georgia_2007	Protein	CBW46806.1
Kenya_Tk1_2005	Protein	AJL34152.1
Kenya_Bus_2006	Protein	AJL34316.1
Russia_Odintsovo_2014	Protein	CAN10239.1
Portugal_L60_1960	Protein	AIY22331.1
Portugal_NHV_1968	Protein	AIY22489.1
Russia_Kashino_2013	Protein	CAN10239.1
Benin_1997	Protein Protein	CAN10239.1 CAN10239.1
South_Africa_KNP_Pretorisuskop_1996	Protein	CAN10239.1
South_Africa_MGR_Mkuzi_1979	Protein	CAN10239.1
Malawi_Lil_1983	Protein	CAN10239.1
Kenya_1950	Protein	CAN10239.1
Namibia_Warthog_1980	Protein	CAN10239.1
South_Africa_Warmbaths_1987	Protein	CAN10239.1
Malawi_Tengani_1962	Protein	CAN10239.1
China_HLJ_2018	Protein	QBH90628.1
China_LN_2018	Protein	QBH90813.1
China_wbBS01_2018	Protein	QDL88171.1
Ukraine_Kyiv_2014	Protein	QED21756.1
Belgium_Etalle_wb_2018	Protein	QED90583.1
Lithuania_LT14_2014	Protein	QEY87946.1
South_Africa_1985
South_Africa_2_2008
Zambia_LIV_1983

Sequence