Strain
Uganda_N10_2015
(Region: Uganda, Tororo district; Strain: N10; Date: 2015)
Gene
pURF48
Description
Annotated in NCBI,
hypothetical protein
Location
GenBank Accession
Sequence
CDS
ATGAGTTTGATAGTCATTGCCTGCTGTTTAGTCTTAATTATTATACTTATTATTATCTTATACCCAGAAAAAAAGAATAATACCCCTTCGTCGGAAAACCAAGTGGATACGCTTATTCACAGTATTCATAAAAAGCAATTGCAATACAGAATATCGTAA
Protein
MSLIVIACCLVLIIILIIILYPEKKNNTPSSENQVDTLIHSIHKKQLQYRIS
Summary
Uniprot
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Single-Pass Membrane
Topology
Length:
52
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
19.32961
Exp number, first 60 AAs:
19.32961
Total prob of N-in:
0.75971
POSSIBLE N-term signal
sequence
inside
1 - 1
TMhelix
2 - 21
outside
22 - 52
Population Genetic Test Statistics
Pi
0.0288055
Theta
0.0347751
Tajima's D
-0.3975575
CLR
0
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 |
Protein |
AOO54466.1 |
|
| China_AnhuiXCGQ_2018 |
Protein |
AOO54466.1 |
|
| China_ASFV-SY18_2018 |
Protein |
AOO54466.1 |
|
| Poland_Pol16_20186_o7_2016-2017 |
Protein |
AOO54466.1 |
|
| Poland_Pol16_20538_o9_2016-2017 |
Protein |
AOO54466.1 |
|
| Poland_Pol16_20540_o10_2016-2017 |
Protein |
AOO54466.1 |
|
| Poland_Pol16_29413_o23_2016-2017 |
Protein |
AOO54466.1 |
|
| Poland_Pol17_03029_C201_2016-2017 |
Protein |
AOO54466.1 |
|
| Poland_Pol17_04461_C210_2016-2017 |
Protein |
AOO54466.1 |
|
| Poland_Pol17_05838_C220_2016-2017 |
Protein |
AOO54466.1 |
|
| Poland_ASFV_POL_Podlaskie_2015 |
Protein |
AOO54466.1 |
|
| Uganda_R8_2015 |
Protein |
AXB49335.1 |
|
| Uganda_R7_2015 |
Protein |
AXB49509.1 |
|
| Uganda_R25_2015 |
Protein |
AXB49681.1 |
|
| Uganda_N10_2015 |
Protein |
AXB49852.1 |
|
| Uganda_R35_2015 |
Protein |
AXB50025.1 |
|
| Estonia_2014 |
Protein |
AOO54466.1 |
|
| Italy_26544_OG10_2010 |
Protein |
AOO54466.1 |
|
| Italy_47_Ss_2008_2008 |
Protein |
AOO54466.1 |
|
| Portugal_OURT_88.3_1988 |
Protein |
AOO54466.1 |
|
| Spain_E75_1975 |
Protein |
AOO54466.1 |
|
| Russia_Georgia_2007 |
Protein |
AOO54466.1 |
|
| Kenya_Tk1_2005 |
Genetic Remain |
AOO54466.1 |
|
| Kenya_Bus_2006 |
Genetic Remain |
AOO54466.1 |
|
| Russia_Odintsovo_2014 |
Protein |
AOO54466.1 |
|
| Portugal_L60_1960 |
Protein |
AOO54466.1 |
|
| Portugal_NHV_1968 |
Protein |
AOO54466.1 |
|
| Russia_Kashino_2013 |
Protein |
AOO54466.1 |
|
| Benin_1997 |
Protein |
AOO54466.1 |
|
| South_Africa_KNP_Pretorisuskop_1996 |
Protein |
AOO54466.1 |
|
| South_Africa_MGR_Mkuzi_1979 |
Protein |
AOO54466.1 |
|
| Malawi_Lil_1983 |
Genetic Remain |
AOO54466.1 |
|
| Kenya_1950 |
Genetic Remain |
AOO54466.1 |
|
| Namibia_Warthog_1980 |
Protein |
AOO54466.1 |
|
| South_Africa_Warmbaths_1987 |
Protein |
AOO54466.1 |
|
| Malawi_Tengani_1962 |
Protein |
AOO54466.1 |
|
| China_HLJ_2018 |
Protein |
AOO54466.1 |
|
| China_LN_2018 |
Protein |
AOO54466.1 |
|
| China_wbBS01_2018 |
Protein |
AOO54466.1 |
|
| Ukraine_Kyiv_2014 |
Protein |
QED21710.1 |
|
| Belgium_Etalle_wb_2018 |
Protein |
AOO54466.1 |
|
| Lithuania_LT14_2014 |
Protein |
AOO54466.1 |
|
| South_Africa_1985 |
Protein |
AOO54466.1 |
|
| South_Africa_2_2008 |
Protein |
AOO54466.1 |
|
| Zambia_LIV_1983 |
Protein |
AOO54466.1 |
