Strain
Uganda_R7_2015
(Region: Uganda, Tororo district; Strain: R7; Date: 2015)
Gene
p01990-1L
Description
Annotated in NCBI,
p01990-1L
Location
GenBank Accession
Sequence
CDS
ATGAATATTTATCTTACGTGGTTTCTCTGCATACTAGTGGGCAACCTGATATTAGCAATCGTATATTGCATGATAGATGAGGTGTGTGATAATATCCATATAATAAGAAATGTTGCCGCCCCGCCGCCGCCTGAGATACCGCCGCCGCGGTACTAA
Protein
MNIYLTWFLCILVGNLILAIVYCMIDEVCDNIHIIRNVAAPPPPEIPPPRY
Summary
Uniprot
EMBL
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Host nucleus. Host cytoplasm.
Topology
Length:
51
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
21.03112
Exp number, first 60 AAs:
21.03112
Total prob of N-in:
0.33700
POSSIBLE N-term signal
sequence
outside
1 - 3
TMhelix
4 - 26
inside
27 - 51
Population Genetic Test Statistics
Pi
0.16338
Theta
0.3038959
Tajima's D
-1.7886811
CLR
0.117615
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 | |||
| China_AnhuiXCGQ_2018 |
Protein |
AYW34131.1 |
|
| China_ASFV-SY18_2018 | |||
| Poland_Pol16_20186_o7_2016-2017 |
Protein |
AXZ95932.1 |
|
| Poland_Pol16_20538_o9_2016-2017 |
Protein |
QED21537.1 |
|
| Poland_Pol16_20540_o10_2016-2017 |
Protein |
QED21537.1 |
|
| Poland_Pol16_29413_o23_2016-2017 |
Protein |
QED21537.1 |
|
| Poland_Pol17_03029_C201_2016-2017 |
Protein |
QED21537.1 |
|
| Poland_Pol17_04461_C210_2016-2017 |
Protein |
AXZ96215.1 |
|
| Poland_Pol17_05838_C220_2016-2017 |
Protein |
QED21537.1 |
|
| Poland_ASFV_POL_Podlaskie_2015 |
Protein |
QED21537.1 |
|
| Uganda_R8_2015 |
Protein Protein Protein |
AXB49217.1 AXB49217.1 AXB49389.1 |
|
| Uganda_R7_2015 |
Protein Protein |
AXB49390.1 AXB49563.1 |
|
| Uganda_R25_2015 |
Protein Protein |
AXB49564.1 AXB49735.1 |
|
| Uganda_N10_2015 |
Protein Protein |
AXB49736.1 AXB49906.1 |
|
| Uganda_R35_2015 |
Protein Protein |
AXB49907.1 AXB50079.1 |
|
| Estonia_2014 |
Protein Protein |
SPS73416.1 SPS73586.1 |
|
| Italy_26544_OG10_2010 | |||
| Italy_47_Ss_2008_2008 | |||
| Portugal_OURT_88.3_1988 | |||
| Spain_E75_1975 | |||
| Russia_Georgia_2007 |
Protein |
CBW46829.1 |
|
| Kenya_Tk1_2005 | |||
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 |
Protein |
QED21537.1 |
|
| Portugal_L60_1960 | |||
| Portugal_NHV_1968 | |||
| Russia_Kashino_2013 |
Protein |
QED21537.1 |
|
| Benin_1997 | |||
| South_Africa_KNP_Pretorisuskop_1996 | |||
| South_Africa_MGR_Mkuzi_1979 | |||
| Malawi_Lil_1983 | |||
| Kenya_1950 |
Protein |
AXB49217.1 |
|
| Namibia_Warthog_1980 |
Protein |
QED21537.1 |
|
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 | |||
| China_HLJ_2018 |
Protein |
QBH90649.1 |
|
| China_LN_2018 |
Protein |
QBH90834.1 |
|
| China_wbBS01_2018 |
Protein |
QDL88193.1 |
|
| Ukraine_Kyiv_2014 |
Protein |
QED21782.1 |
|
| Belgium_Etalle_wb_2018 |
Protein |
QED90606.1 |
|
| Lithuania_LT14_2014 |
Protein |
QEY87968.1 |
|
| South_Africa_1985 | |||
| South_Africa_2_2008 | |||
| Zambia_LIV_1983 |
