Strain

Uganda_R7_2015 (Region: Uganda, Tororo district; Strain: R7; Date: 2015)

Gene

pH233R

Description

Annotated in NCBI, putative transmembrane protein

Location

MH025917.1(+):153784-154488

GenBank Accession

AXB49521.1

Full name

Uncharacterized protein H233R

CDS

ATGATGATCCTTATAGCCAGCCCGTTCTCGCTGACGCATCTTGAATATCTCAATACCTGGCACGCCCACATCAAAAACATTGTCCAACAACACGGGCTTGATATAAAGGTGGCCATTGTGATCTCAAACACGCATTTAAATAATTTTTTGCCAGTTTCCACACCGCTTAACATCGAATGTATAACCTTTCCCGGCTGCGGCATAAAGGAGATAGACCTTCTATGGGCACGCATTAAACTATTTCAACATTACTGCGCAATCGGCGCCCGTCTTTTATGGCTGGTGAGTGCTGACATCAGGCCCTCTGTTTCAACGTGGCCAGCGATCGCCGACAGTCTAAAAAAGGGAGCAGATGCGGTCGTTGTTCCCTATCCCTCCCGGTGGAACAACCTTATACCTACCGTCATCAAAGAAATAGTTGTCCGCCAAAAAAAATGCCTTGTGGCGGTGGATGCACATCACCTTGATACAGATACCCAAATTGTAGGGGCCGGGATGGGCTGCATCGTCCTAACCCTAAAGGCCCTTATGGTGCGTCTAAGTATCGGCAAACAGCCCATTAAAATACTGTGGCCCGACCTTCACGGCACCGCCGAGGGCATTCCCCTGGAAGGGGTAGAGGTTGGCTGGTTTTTAAACGCTTATGCACATAAATTAAACATACGTTGCCTAGGGCGGGATTATATTGCGCAGCACTTAAATTAA

Protein

MMILIASPFSLTHLEYLNTWHAHIKNIVQQHGLDIKVAIVISNTHLNNFLPVSTPLNIECITFPGCGIKEIDLLWARIKLFQHYCAIGARLLWLVSADIRPSVSTWPAIADSLKKGADAVVVPYPSRWNNLIPTVIKEIVVRQKKCLVAVDAHHLDTDTQIVGAGMGCIVLTLKALMVRLSIGKQPIKILWPDLHGTAEGIPLEGVEVGWFLNAYAHKLNIRCLGRDYIAQHLN

Similarity

Belongs to the asfivirus H233R family.

Keywords

Complete proteome Reference proteome

Feature

chain Uncharacterized protein H233R

Uniprot

A0A2Z5DEJ8 A0A0C5B2Q5 A0A0C5B297 P0CAA4 Q65234 P0CAA5 + More
P0CAA6 A9JLA0 D4I5E2 A9JM35 E0WM68 A0A0A1E0D1 Q65189

Pubmed

25645905 8021596 18198370 21470447 25406173 26618713 + More
11831707

EMBL

MH025916 MH025917 MH025918 MH025919 MH025920 AXB49347.1 + More
AXB49521.1 AXB49693.1 AXB49864.1 AXB50037.1 KM111295 AJL34296.1 KM111294 AJL34131.1 AY261360 X71982 AY261361 AY261363 AY261366 AM712239 CAN10218.1 FN557520 CBH29218.1 AM712240 CAN10467.1 FR682468 CBW46784.1 KM262844 KM262845 KM102979 KP055815 KX354450 MG939583 MG939588 LS478113 AIY22309.1 AIY22467.1 AJZ77125.1 AKO62799.1 AOO54484.1 AXZ95891.1 AXZ96174.1 SPS73541.1 U18466

Proteomes

UP000101566 UP000105860 UP000000861 UP000000860 UP000000859 UP000000858 + More
UP000130745 UP000101090 UP000108903 UP000141072 UP000110401 UP000117635 UP000142390 UP000241813 UP000266411 UP000000624

ProteinModelPortal

A0A2Z5DEJ8 A0A0C5B2Q5 A0A0C5B297 P0CAA4 Q65234 P0CAA5 + More
P0CAA6 A9JLA0 D4I5E2 A9JM35 E0WM68 A0A0A1E0D1 Q65189

PDB

5U1C E-value=0.362056, Score=75

Ontologies

KEGG

vg:22220348

Subcellular Location

From MSLVP

Host nucleus. Host cytoplasm.

Topology

Length:

234

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.49558

Exp number, first 60 AAs:

0.00482

Total prob of N-in:

0.01897

outside

1 - 234

Population Genetic Test Statistics

Pi

0.0363938

Theta

0.0409605

Tajima's D

-0.6974558

CLR

0

Interpretation

No evidence of Selection

Multiple alignment of Orthologues

Gene Tree

Orthologous in Strains

Strain	Status	Gene
Spain_BA71_1971
China_AnhuiXCGQ_2018
China_ASFV-SY18_2018	Protein	AKO62799.1
Poland_Pol16_20186_o7_2016-2017
Poland_Pol16_20538_o9_2016-2017
Poland_Pol16_20540_o10_2016-2017
Poland_Pol16_29413_o23_2016-2017
Poland_Pol17_03029_C201_2016-2017
Poland_Pol17_04461_C210_2016-2017
Poland_Pol17_05838_C220_2016-2017
Poland_ASFV_POL_Podlaskie_2015
Uganda_R8_2015	Protein Protein	AXB49347.1 AXB49347.1
Uganda_R7_2015	Protein	AXB49521.1
Uganda_R25_2015	Protein	AXB49693.1
Uganda_N10_2015	Protein	AXB49864.1
Uganda_R35_2015	Protein	AXB50037.1
Estonia_2014
Italy_26544_OG10_2010
Italy_47_Ss_2008_2008
Portugal_OURT_88.3_1988
Spain_E75_1975
Russia_Georgia_2007
Kenya_Tk1_2005	Protein	AJL34131.1
Kenya_Bus_2006	Protein	AJL34296.1
Russia_Odintsovo_2014
Portugal_L60_1960
Portugal_NHV_1968
Russia_Kashino_2013
Benin_1997
South_Africa_KNP_Pretorisuskop_1996
South_Africa_MGR_Mkuzi_1979
Malawi_Lil_1983
Kenya_1950	Protein	AXB49347.1
Namibia_Warthog_1980
South_Africa_Warmbaths_1987
Malawi_Tengani_1962
China_HLJ_2018
China_LN_2018
China_wbBS01_2018
Ukraine_Kyiv_2014	Protein	QED21726.1
Belgium_Etalle_wb_2018
Lithuania_LT14_2014
South_Africa_1985
South_Africa_2_2008
Zambia_LIV_1983

Sequence