Strain

Estonia_2014 (Region: Estonia; Strain: Estonia 2014; Date: 2014)

Gene

C84L CDS

Description

Annotated in NCBI, BA71V-C84L

Location

LS478113.1(-):74076-74330

GenBank Accession

SPS73486.1

Full name

Uncharacterized protein C84L

Sequence

CDS

ATGCTGCTATTTATATGGATCAGGAACAACTTTTCGATAAGCTATATTCCCTTAATTTACAGCTTACTGCAAAAAACGACCAAAAAAAAAGAAAACCGATTTTTTATCCGGAGTGGGAAAAAGATCCAACGGATACAAATGATGATGTTTATTACGGTTTACGATATAAACCAGAAGCAAAAAAAACGCTACGGTCTACGTGGATGCAATCTGAATTTGAAAGCCACCGTTCTTCCTCTGCATAAACGTATATGA

Protein

MLLFIWIRNNFSISYIPLIYSLLQKTTKKKENRFFIRSGKKIQRIQMMMFITVYDINQKQKKRYGLRGCNLNLKATVLPLHKRI

Summary

Similarity

Belongs to the asfivirus C84L family.

Keywords

Complete proteome Host membrane Membrane Reference proteome Transmembrane Transmembrane helix

Feature

chain Uncharacterized protein C84L

Uniprot

A0A2X0RUA3 A9JL12 D4I5Q1 A9JLT5 A0A0A1E116 Q65155 + More
P0CAL3 P0CAL2

Pubmed

18198370 25406173 26618713 11831707

EMBL

LS478113 SPS73486.1 AM712239 CAN10163.1 FN557520 CBH29164.1 + More
AM712240 CAN10411.1 KM262844 KM262845 KM102979 KP055815 KX354450 AIY22255.1 AIY22413.1 AJZ77181.1 AKO62745.1 AOO54396.1 U18466 AY261366 AY261363

Proteomes

UP000130745 UP000101090 UP000108903 UP000110401 UP000117635 UP000142390 + More
UP000241813 UP000266411 UP000000624 UP000000858 UP000000859

PRIDE

P0CAL2

ProteinModelPortal

A0A2X0RUA3 A9JL12 D4I5Q1 A9JLT5 A0A0A1E116 Q65155 + More
P0CAL3 P0CAL2

Ontologies

KEGG

vg:22220293

GO:0016021 C:integral component of membrane
GO:0033644 C:host cell membrane

Subcellular Location

From MSLVP

Single-Pass Membrane

From Uniprot

Host membrane

Topology

Length:

Number of predicted TMHs:

Exp number of AAs in TMHs:

15.14753

Exp number, first 60 AAs:

15.13235

Total prob of N-in:

0.05548

POSSIBLE N-term signal

sequence

outside

1 - 3

TMhelix

4 - 23

inside

24 - 84

Population Genetic Test Statistics

0.0279693

Theta

0.0372574

Tajima's D

-0.7289584

CLR

Interpretation

No evidence of Selection

Multiple alignment of Orthologues

Gene Tree

Orthologous in Strains

Strain	Status	Gene
Spain_BA71_1971	Protein	AKO62745.1
China_AnhuiXCGQ_2018	Protein	AYW34035.1
China_ASFV-SY18_2018	Protein Genetic Remain	CBW46729.1 AXZ95838.1
Poland_Pol16_20186_o7_2016-2017
Poland_Pol16_20538_o9_2016-2017	Protein	CAN10163.1
Poland_Pol16_20540_o10_2016-2017	Protein	CAN10163.1
Poland_Pol16_29413_o23_2016-2017	Protein	CAN10163.1
Poland_Pol17_03029_C201_2016-2017
Poland_Pol17_04461_C210_2016-2017
Poland_Pol17_05838_C220_2016-2017	Protein	CAN10163.1
Poland_ASFV_POL_Podlaskie_2015	Protein	CAN10163.1
Uganda_R8_2015
Uganda_R7_2015
Uganda_R25_2015
Uganda_N10_2015
Uganda_R35_2015
Estonia_2014	Protein	SPS73486.1
Italy_26544_OG10_2010	Protein	AJZ77181.1
Italy_47_Ss_2008_2008	Protein	AOO54396.1
Portugal_OURT_88.3_1988	Protein	CAN10411.1
Spain_E75_1975	Protein	CBH29164.1
Russia_Georgia_2007	Protein	CBW46729.1
Kenya_Tk1_2005	Protein	AJL34077.1
Kenya_Bus_2006	Protein	AJL34242.1
Russia_Odintsovo_2014	Protein	CAN10163.1
Portugal_L60_1960	Protein	AIY22255.1
Portugal_NHV_1968	Protein	AIY22413.1
Russia_Kashino_2013	Protein	CAN10163.1
Benin_1997	Protein Protein	CAN10163.1 CAN10163.1
South_Africa_KNP_Pretorisuskop_1996
South_Africa_MGR_Mkuzi_1979	Protein	CAN10163.1
Malawi_Lil_1983
Kenya_1950
Namibia_Warthog_1980
South_Africa_Warmbaths_1987
Malawi_Tengani_1962	Protein	CAN10163.1
China_HLJ_2018	Protein	QBH90551.1
China_LN_2018	Protein	QBH90736.1
China_wbBS01_2018
Ukraine_Kyiv_2014
Belgium_Etalle_wb_2018	Protein	QED90506.1
Lithuania_LT14_2014	Protein	QEY87869.1
South_Africa_1985
South_Africa_2_2008
Zambia_LIV_1983