Strain

Portugal_L60_1960 (Region: Portugal;  Strain: L60;  Date: 1960)

Gene

pH108R

Description

Annotated in NCBI,  putative transmembrane protein

Location

KM262844.1(+):148963-149289

GenBank Accession

AIY22308.1

Full name

Protein H108R      

CDS

ATGGTGAATCTTTTTCCTGTTTTTACCTTAATTGTGATTATTACAATTTTAATTACGACTCGAGAACTATCCACCACGATGCTTATTGTTTCTCTTGTAACAGATTATATTATTATTAATACACAGTATACGGAACAGCAGCATGAAAACAATACATTTTCCATGCCGCAAAAAAATTCTTTTAACGAATCTTATAATAAAGACAAAAAATCTAATACACATATTCCCTACCAGTGGCTGGCGCCTGAACTAAAGGAAGCTGAGAGCAAGTACTGGTGGGGCAATTATGATCCTCATAGCGAGCCCGTTCTCGCTGGCGCATCTTGA

Protein

MVNLFPVFTLIVIITILITTRELSTTMLIVSLVTDYIIINTQYTEQQHENNTFSMPQKNSFNESYNKDKKSNTHIPYQWLAPELKEAESKYWWGNYDPHSEPVLAGAS

Similarity

Belongs to the asfivirus H108R family.

Keywords

Complete proteome   Glycoprotein   Late protein   Membrane   Reference proteome   Transmembrane   Transmembrane helix   Virion  

Feature

chain  Protein H108R

Uniprot

A9JL98   D4I5E1   A9JM33   A0A0A1E0R8   Q65188   P0CA15   + More
P0CA14   E0WM67   A0A2X0TCC8   Q65233   A0A0C5B088   P0CA13   A0A0C5AZK2  

Pubmed

18198370    25406173    26618713    11831707    21470447    8409937    + More
8021596    9603333    25645905   

EMBL

AM712239    CAN10217.1    FN557520    CBH29217.1    AM712240    CAN10466.1    + More
KM262844    KM262845    KM102979    KP055815    KX354450    AIY22308.1    AIY22466.1    AJZ77170.1    AKO62798.1    AOO54483.1    U18466    AY261366    AY261363    FR682468    CBW46783.1    MG939583    MG939588    LS478113    AXZ95890.1    AXZ96173.1    SPS73540.1    X71982    AY261361    KM111295    MH025916    MH025917    MH025918    MH025919    MH025920    AJL34295.1    AXB49346.1    AXB49520.1    AXB49692.1    AXB49863.1    AXB50036.1    AY261360    KM111294    AJL34130.1   

Proteomes

UP000130745    UP000101090    UP000108903    UP000110401    UP000117635    UP000142390    + More
UP000241813    UP000266411    UP000000624    UP000000858    UP000000859    UP000141072    UP000000860    UP000101566    UP000000861    UP000105860   

ProteinModelPortal

A9JL98   D4I5E1   A9JM33   A0A0A1E0R8   Q65188   P0CA15   + More
P0CA14   E0WM67   A0A2X0TCC8   Q65233   A0A0C5B088   P0CA13   A0A0C5AZK2  

KEGG

vg:22220347    

GO

GO:0016021  C:integral component of membrane
GO:0055036  C:virion membrane

From MSLVP

Single-Pass Membrane

From Uniprot

Virion membrane   Detected mainly on membrane-like structures within viral factories.   With evidence from 1 publications.

Length:

108

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

20.05303

Exp number, first 60 AAs:

20.05303

Total prob of N-in:

0.49455

POSSIBLE N-term signal

sequence

outside

1  -  9

TMhelix

10  -  32

inside

33  -  108

 

 

Pi

0.0367858

Theta

0.044285

Tajima's D

-0.6622854

CLR

0.175191

Interpretation

No evidence of Selection