Strain
Russia_Georgia_2007
(Region: Russia; Strain: Georgia 2007/1; Date: 2007)
Gene
L11L
Description
Annotated in NCBI,
pBA71-J93L
Location
GenBank Accession
Sequence
CDS
ATGGATTTTTTTTTGCTAAAAAAAATATTTTTTTTTGTAGACAACAGGATGTTGGAGCCAATGTTAGTAATGGCCCCTATTCCTCTTGTACTCATATTTTTATATTCTTACTTTAAAATAAAGTTACATAAACTTATAACAATTGCACTCTTTTTAGGATGTTTATTTTTCATATTACGAGATTTTTGTTTCCCACCCATGTTATGGACTCAATTACACAATATTACTTCATCTATTAATATTTTAGGTAATAAGTCTTTTCAAGTTCAGTGTAATAAATAA
Protein
MDFFLLKKIFFFVDNRMLEPMLVMAPIPLVLIFLYSYFKIKLHKLITIALFLGCLFFILRDFCFPPMLWTQLHNITSSINILGNKSFQVQCNK
Summary
Uniprot
EMBL
Proteomes
Pfam
PF05293
ASFV_L11L
Interpro
IPR007957
ASFV_L11L
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Single-Pass Membrane
Topology
Length:
93
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
38.83164
Exp number, first 60 AAs:
35.30613
Total prob of N-in:
0.01813
POSSIBLE N-term signal
sequence
Length:
93
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
38.83164
Exp number, first 60 AAs:
35.30613
Total prob of N-in:
0.01813
POSSIBLE N-term signal
sequence
outside
1 - 19
TMhelix
20 - 38
inside
39 - 44
TMhelix
45 - 64
outside
65 - 93
outside
1 - 19
TMhelix
20 - 38
inside
39 - 44
TMhelix
45 - 64
outside
65 - 93
Population Genetic Test Statistics
Pi
0.0428581
Theta
0.0709278
Tajima's D
-0.868114
CLR
0.117039
Interpretation
No evidence of Selection
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| Spain_BA71_1971 |
Protein |
AKO62834.1 |
|
| China_AnhuiXCGQ_2018 |
Protein |
AYW34124.1 |
|
| China_ASFV-SY18_2018 |
Protein |
AKO62834.1 |
|
| Poland_Pol16_20186_o7_2016-2017 |
Protein |
AXZ95924.1 |
|
| Poland_Pol16_20538_o9_2016-2017 |
Protein |
CBW46821.1 |
|
| Poland_Pol16_20540_o10_2016-2017 |
Protein |
CBW46821.1 |
|
| Poland_Pol16_29413_o23_2016-2017 |
Protein |
CBW46821.1 |
|
| Poland_Pol17_03029_C201_2016-2017 |
Protein |
CBW46821.1 |
|
| Poland_Pol17_04461_C210_2016-2017 |
Protein |
AXZ96207.1 |
|
| Poland_Pol17_05838_C220_2016-2017 |
Protein |
CBW46821.1 |
|
| Poland_ASFV_POL_Podlaskie_2015 |
Protein |
CBW46821.1 |
|
| Uganda_R8_2015 | |||
| Uganda_R7_2015 | |||
| Uganda_R25_2015 | |||
| Uganda_N10_2015 | |||
| Uganda_R35_2015 | |||
| Estonia_2014 |
Protein Protein |
SPS73425.1 SPS73577.1 |
|
| Italy_26544_OG10_2010 |
Protein Protein |
CBW46821.1 AJZ77185.1 |
|
| Italy_47_Ss_2008_2008 |
Protein Protein |
CBW46821.1 AOO54529.1 |
|
| Portugal_OURT_88.3_1988 |
Protein |
CAN10502.1 |
|
| Spain_E75_1975 |
Protein Protein |
CBW46821.1 CBH29254.1 |
|
| Russia_Georgia_2007 |
Protein Protein |
CBW46821.1 CBW46821.1 |
|
| Kenya_Tk1_2005 |
Protein |
AJL34166.1 |
|
| Kenya_Bus_2006 | |||
| Russia_Odintsovo_2014 |
Protein |
CBW46821.1 |
|
| Portugal_L60_1960 |
Protein |
AIY22344.1 |
|
| Portugal_NHV_1968 |
Protein |
AIY22502.1 |
|
| Russia_Kashino_2013 |
Protein |
CBW46821.1 |
|
| Benin_1997 |
Protein |
CAN10252.1 |
|
| South_Africa_KNP_Pretorisuskop_1996 |
Protein |
CBW46821.1 |
|
| South_Africa_MGR_Mkuzi_1979 |
Protein |
CBW46821.1 |
|
| Malawi_Lil_1983 |
Protein |
CBW46821.1 |
|
| Kenya_1950 | |||
| Namibia_Warthog_1980 |
Genetic Remain |
CBW46821.1 |
|
| South_Africa_Warmbaths_1987 | |||
| Malawi_Tengani_1962 |
Protein |
CBW46821.1 |
|
| China_HLJ_2018 |
Protein |
QBH90642.1 |
|
| China_LN_2018 |
Protein |
QBH90827.1 |
|
| China_wbBS01_2018 |
Protein |
QDL88185.1 |
|
| Ukraine_Kyiv_2014 |
Protein |
QED21774.1 |
|
| Belgium_Etalle_wb_2018 |
Protein |
QED90597.1 |
|
| Lithuania_LT14_2014 |
Protein |
QEY87959.1 |
|
| South_Africa_1985 |
Protein |
CBW46821.1 |
|
| South_Africa_2_2008 |
Protein |
CBW46821.1 |
|
| Zambia_LIV_1983 |
Protein |
CBW46821.1 |
